Wall clock time and date at job start Wed Apr 1 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47205 * 2 1 4 4 O 1.21290 * 119.99882 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39955 * 119.99881 * 184.73990 * 5 3 2 7 7 C 1.38993 * 120.00110 * 213.37485 * 6 5 3 8 8 C 1.38214 * 120.22608 * 180.02562 * 7 6 5 9 9 C 1.38017 * 120.22029 * 359.74851 * 8 7 6 10 10 C 1.39582 * 119.99623 * 0.50759 * 9 8 7 11 11 C 1.47860 * 120.10818 * 179.76911 * 10 9 8 12 12 O 1.21551 * 119.99656 * 185.05046 * 11 10 9 13 13 N 1.34776 * 120.00168 * 5.05371 * 11 10 9 14 14 C 1.46502 * 120.00031 * 184.62284 * 13 11 10 15 15 H 1.09007 * 109.46786 * 37.45917 * 14 13 11 16 16 C 1.52997 * 109.47350 * 277.46186 * 14 13 11 17 17 C 1.52998 * 109.47148 * 157.45575 * 14 13 11 18 18 C 1.52998 * 109.47286 * 296.17818 * 17 14 13 19 19 H 1.08996 * 109.47199 * 54.09186 * 18 17 14 20 20 C 1.53005 * 109.47019 * 294.09206 * 18 17 14 21 21 N 1.46504 * 109.46948 * 174.09844 * 18 17 14 22 22 C 1.36940 * 119.99651 * 201.87880 * 21 18 17 23 23 H 1.07998 * 119.99619 * 4.81641 * 22 21 18 24 24 C 1.38805 * 119.99559 * 184.53836 * 22 21 18 25 25 N 1.31625 * 119.99853 * 174.49042 * 24 22 21 26 26 Si 1.86800 * 120.00221 * 354.49645 * 24 22 21 27 27 H 1.48504 * 109.46946 * 94.16900 * 26 24 22 28 28 H 1.48503 * 109.46731 * 214.16593 * 26 24 22 29 29 H 1.48489 * 109.47176 * 334.16772 * 26 24 22 30 30 C 1.38599 * 120.00403 * 33.39372 * 6 5 3 31 31 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47437 * 300.00131 * 1 2 3 33 33 H 1.08997 * 109.47234 * 60.00111 * 1 2 3 34 34 H 1.09003 * 109.47437 * 239.99869 * 2 1 3 35 35 H 1.08997 * 109.47234 * 119.99889 * 2 1 3 36 36 H 0.97001 * 120.00248 * 4.72706 * 5 3 2 37 37 H 1.08001 * 119.88377 * 359.97438 * 7 6 5 38 38 H 1.07998 * 119.88732 * 179.97438 * 8 7 6 39 39 H 1.08004 * 119.99968 * 180.25356 * 9 8 7 40 40 H 0.96997 * 120.00303 * 4.62682 * 13 11 10 41 41 H 1.09002 * 109.47375 * 179.97438 * 16 14 13 42 42 H 1.09007 * 109.46957 * 299.99627 * 16 14 13 43 43 H 1.09001 * 109.47200 * 59.99562 * 16 14 13 44 44 H 1.09003 * 109.46959 * 176.17310 * 17 14 13 45 45 H 1.08998 * 109.46653 * 56.17909 * 17 14 13 46 46 H 1.08993 * 109.47322 * 300.00509 * 20 18 17 47 47 H 1.09001 * 109.46587 * 60.00124 * 20 18 17 48 48 H 1.09000 * 109.46785 * 179.97438 * 20 18 17 49 49 H 0.97001 * 120.00054 * 21.87099 * 21 18 17 50 50 H 0.96994 * 120.00381 * 179.97438 * 25 24 22 51 51 H 1.08005 * 120.10853 * 0.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8247 2.9825 0.0996 7 6 4.9939 3.3562 -0.5525 8 6 5.4599 4.6539 -0.4563 9 6 4.7646 5.5886 0.2837 10 6 3.5923 5.2220 0.9468 11 6 2.8482 6.2202 1.7445 12 8 1.8799 5.8787 2.3950 13 7 3.2436 7.5086 1.7502 14 6 2.5699 8.4777 2.6182 15 1 2.3168 8.0021 3.5658 16 6 1.2915 8.9701 1.9371 17 6 3.5003 9.6647 2.8758 18 6 4.7358 9.1875 3.6418 19 1 5.2018 8.3630 3.1022 20 6 4.3201 8.7142 5.0361 21 7 5.6904 10.2919 3.7655 22 6 7.0149 10.0297 3.9942 23 1 7.3691 9.0095 4.0059 24 6 7.9029 11.0754 4.2051 25 7 9.1525 10.8218 4.5320 26 14 7.3248 12.8425 4.0254 27 1 6.9162 13.3671 5.3532 28 1 8.4309 13.6725 3.4842 29 1 6.1678 12.8927 3.0960 30 6 3.1219 3.9125 0.8494 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.9872 0.9326 -0.0701 37 1 5.5405 2.6299 -1.1357 38 1 6.3692 4.9382 -0.9650 39 1 5.1298 6.6027 0.3531 40 1 3.9741 7.7944 1.1796 41 1 0.7900 9.6908 2.5831 42 1 1.5447 9.4457 0.9895 43 1 0.6287 8.1244 1.7536 44 1 2.9753 10.4165 3.4651 45 1 3.8077 10.0984 1.9243 46 1 3.8540 9.5385 5.5757 47 1 3.6098 7.8925 4.9441 48 1 5.2003 8.3738 5.5816 49 1 5.3843 11.2088 3.6852 50 1 9.7732 11.5524 4.6790 51 1 2.2136 3.6239 1.3575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134514420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:31 Heat of formation + Delta-G solvation = -68.916610 kcal Electronic energy + Delta-G solvation = -30279.625194 eV Core-core repulsion = 26177.789966 eV Total energy + Delta-G solvation = -4101.835228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.79529 -40.99322 -39.33833 -38.38006 -36.30150 -35.92127 -34.11301 -33.80540 -32.81300 -31.76796 -30.82646 -30.31815 -27.68212 -25.87196 -25.69010 -25.14265 -23.35641 -22.61143 -21.71570 -21.29845 -21.16128 -19.79434 -19.21214 -18.28890 -17.52803 -17.26623 -16.99342 -16.74208 -16.61855 -16.21575 -15.85515 -15.70735 -15.32977 -15.22222 -14.97670 -14.73990 -14.69563 -14.37823 -14.33034 -13.98074 -13.69042 -13.50825 -13.34058 -13.19841 -13.02678 -12.87613 -12.82947 -12.76445 -12.74117 -12.57379 -12.27149 -12.05940 -12.05148 -11.82169 -11.64191 -11.56062 -11.50731 -11.03336 -10.95457 -10.93237 -10.21339 -9.92470 -9.29726 -9.23520 -7.98897 -5.31626 -0.21528 0.25008 1.40941 1.43844 1.49027 1.51659 1.86768 1.97183 2.18233 2.51959 2.84642 3.31181 3.42141 3.60447 3.71624 3.89965 3.96153 4.05852 4.10363 4.16529 4.18736 4.19463 4.24709 4.41768 4.42763 4.47969 4.54583 4.62449 4.70823 4.77203 4.86411 4.90526 4.92749 4.96472 5.02329 5.03006 5.07433 5.18862 5.24596 5.28273 5.30326 5.35678 5.36573 5.40434 5.45189 5.58689 5.82024 5.90549 6.25094 6.39081 6.49418 7.12103 7.12575 7.15436 7.88129 8.08731 9.22568 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.002238 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.680973 B =12506.109299 C =13540.589901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.498 3.502 4 O -0.569 6.569 5 N -0.661 5.661 6 C 0.127 3.873 7 C -0.107 4.107 8 C -0.102 4.102 9 C -0.102 4.102 10 C -0.136 4.136 11 C 0.555 3.445 12 O -0.580 6.580 13 N -0.706 5.706 14 C 0.148 3.852 15 H 0.074 0.926 16 C -0.155 4.155 17 C -0.122 4.122 18 C 0.173 3.827 19 H 0.044 0.956 20 C -0.159 4.159 21 N -0.749 5.749 22 C -0.223 4.223 23 H 0.053 0.947 24 C -0.067 4.067 25 N -0.984 5.984 26 Si 0.955 3.045 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.245 1.245 30 C -0.090 4.090 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.433 0.567 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.410 0.590 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.027 0.973 49 H 0.366 0.634 50 H 0.256 0.744 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 -21.112 -15.289 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.288 3.712 4 O -0.446 6.446 5 N -0.309 5.309 6 C 0.032 3.968 7 C -0.127 4.127 8 C -0.120 4.120 9 C -0.122 4.122 10 C -0.140 4.140 11 C 0.343 3.657 12 O -0.461 6.461 13 N -0.358 5.358 14 C 0.044 3.956 15 H 0.093 0.907 16 C -0.213 4.213 17 C -0.160 4.160 18 C 0.066 3.934 19 H 0.062 0.938 20 C -0.219 4.219 21 N -0.393 5.393 22 C -0.354 4.354 23 H 0.071 0.929 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.782 3.218 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.169 1.169 30 C -0.112 4.112 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.273 0.727 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.159 0.841 40 H 0.248 0.752 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.200 0.800 50 H 0.065 0.935 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.624 -20.873 -14.766 29.455 hybrid contribution 0.666 1.045 0.268 1.268 sum -13.958 -19.828 -14.497 28.252 Atomic orbital electron populations 1.21574 0.93883 1.02847 1.01664 1.21718 0.97829 0.90094 1.07419 1.21968 0.81502 0.93738 0.73975 1.90777 1.56357 1.48327 1.49187 1.43521 1.08152 1.06576 1.72644 1.17754 0.95829 0.85776 0.97402 1.21498 0.95281 0.97829 0.98090 1.21355 1.00507 0.92140 0.97993 1.21584 0.93158 1.01386 0.96044 1.19800 0.97997 0.94017 1.02168 1.18574 0.83281 0.82980 0.80817 1.90726 1.28915 1.80872 1.45593 1.45984 1.37737 1.07655 1.44380 1.20997 0.92455 0.88504 0.93683 0.90745 1.22102 0.96297 1.01148 1.01772 1.22078 0.95002 0.97213 1.01715 1.20348 0.89053 0.90029 0.94006 0.93822 1.22333 0.99737 1.00540 0.99284 1.42772 1.04140 1.04373 1.88034 1.18959 0.84570 0.93330 1.38586 0.92861 1.25506 0.95812 1.02232 1.02270 1.69905 1.05476 1.32223 1.55905 0.85391 0.77824 0.80283 0.78279 1.21206 1.22549 1.16869 1.21076 0.99978 0.92663 0.97455 0.89165 0.94200 0.93546 0.85163 0.85931 0.72694 0.81181 0.81606 0.84058 0.75231 0.89892 0.91199 0.93933 0.88858 0.89890 0.92645 0.92593 0.95403 0.80030 0.93528 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.20 71.98 0.66 -1.06 16 2 C -0.13 -1.06 6.42 29.85 0.19 -0.86 16 3 C 0.50 9.02 7.57 87.66 0.66 9.69 16 4 O -0.57 -16.98 13.65 -3.06 -0.04 -17.02 16 5 N -0.66 -9.13 5.34 -303.59 -1.62 -10.75 16 6 C 0.13 2.57 6.28 38.11 0.24 2.81 16 7 C -0.11 -1.53 9.95 22.45 0.22 -1.30 16 8 C -0.10 -1.61 10.02 22.21 0.22 -1.39 16 9 C -0.10 -2.19 9.52 22.54 0.21 -1.98 16 10 C -0.14 -3.84 5.87 -20.10 -0.12 -3.96 16 11 C 0.55 17.95 7.69 86.79 0.67 18.61 16 12 O -0.58 -23.14 15.81 -3.87 -0.06 -23.20 16 13 N -0.71 -19.07 4.37 -445.39 -1.94 -21.01 16 14 C 0.15 3.94 2.38 44.99 0.11 4.05 16 15 H 0.07 2.27 6.01 -2.38 -0.01 2.26 16 16 C -0.15 -3.60 9.43 71.98 0.68 -2.92 16 17 C -0.12 -3.28 4.38 30.59 0.13 -3.15 16 18 C 0.17 6.26 2.91 44.99 0.13 6.39 16 19 H 0.04 1.66 7.46 -2.39 -0.02 1.64 16 20 C -0.16 -5.77 9.23 71.98 0.66 -5.11 16 21 N -0.75 -33.35 4.96 -322.93 -1.60 -34.95 16 22 C -0.22 -12.41 10.38 84.03 0.87 -11.54 16 23 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 24 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 25 N -0.98 -62.58 13.97 21.65 0.30 -62.27 16 26 Si 0.95 44.57 27.77 68.60 1.91 46.48 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.24 -10.00 6.48 99.48 0.64 -9.35 16 30 C -0.09 -2.61 8.20 22.66 0.19 -2.43 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 34 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.43 1.87 8.82 -92.71 -0.82 1.06 16 37 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.14 2.63 6.46 -2.91 -0.02 2.61 16 40 H 0.41 9.45 6.60 -92.71 -0.61 8.84 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.04 1.16 7.85 -2.39 -0.02 1.14 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 1.85 6.52 -2.39 -0.02 1.83 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.37 15.45 5.63 -92.71 -0.52 14.92 16 50 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 51 H 0.11 4.00 6.00 -2.91 -0.02 3.98 16 Total: -1.00 -86.09 414.80 2.09 -84.00 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -1.05 Total: 36.31 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.21 Total: 2.43 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -4.86 Total: -128.99 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.10 Total: -40.22 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.91 Total: 46.48 kcal Total: -86.09 2.09 -84.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134514420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.081 kcal (2) G-P(sol) polarization free energy of solvation -86.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds