Wall clock time and date at job start Wed Apr 1 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46972 * 2 1 4 4 O 1.21284 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99805 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46780 * 269.99277 * 6 5 3 8 8 N 1.46906 * 109.47002 * 179.97438 * 7 6 5 9 9 C 1.46892 * 111.00044 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47182 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99926 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00253 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00351 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99665 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00502 * 179.97438 * 13 12 10 16 16 N 1.31417 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00318 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47107 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47223 * 120.00030 * 17 15 13 20 20 H 1.48499 * 109.47577 * 240.00253 * 17 15 13 21 21 C 1.46496 * 119.99885 * 359.97438 * 5 3 2 22 22 C 1.52995 * 109.47070 * 90.00634 * 21 5 3 23 23 C 1.50707 * 109.47301 * 179.97438 * 22 21 5 24 24 C 1.38238 * 119.99792 * 90.00016 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97953 * 23 22 21 29 29 H 1.08997 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47116 * 300.00415 * 1 2 3 31 31 H 1.08999 * 109.47122 * 60.00180 * 1 2 3 32 32 H 1.08996 * 109.47116 * 239.99584 * 2 1 3 33 33 H 1.08999 * 109.47122 * 119.99820 * 2 1 3 34 34 H 1.09003 * 109.47109 * 29.99830 * 6 5 3 35 35 H 1.09008 * 109.46723 * 149.99386 * 6 5 3 36 36 H 1.09003 * 109.47751 * 300.00159 * 7 6 5 37 37 H 1.09004 * 109.46964 * 60.00681 * 7 6 5 38 38 H 1.00912 * 110.99383 * 56.04878 * 8 7 6 39 39 H 1.09000 * 109.47361 * 300.00194 * 9 8 7 40 40 H 1.09000 * 109.47177 * 60.00242 * 9 8 7 41 41 H 0.97001 * 119.99762 * 359.97438 * 12 10 9 42 42 H 0.96996 * 119.99814 * 179.97438 * 16 15 13 43 43 H 1.08995 * 109.47623 * 330.00403 * 21 5 3 44 44 H 1.09004 * 109.47046 * 210.00410 * 21 5 3 45 45 H 1.09005 * 109.47610 * 60.00011 * 22 21 5 46 46 H 1.09000 * 109.47256 * 299.99352 * 22 21 5 47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 4.0153 3.5287 -1.4437 8 7 4.5044 4.9140 -1.4444 9 6 4.6789 5.4100 -2.8159 10 6 5.1810 6.8304 -2.7764 11 8 5.3740 7.3759 -1.7104 12 7 5.4147 7.4948 -3.9254 13 6 5.8710 8.7871 -3.8895 14 1 6.0428 9.2728 -2.9402 15 6 6.1124 9.4720 -5.0741 16 7 5.9028 8.8811 -6.2291 17 14 6.7334 11.2330 -5.0250 18 1 6.8864 11.6647 -3.6124 19 1 8.0475 11.3138 -5.7119 20 1 5.7606 12.1204 -5.7116 21 6 4.3094 0.5537 -0.0005 22 6 4.6404 0.1657 -1.4430 23 6 5.6202 -0.9793 -1.4430 24 6 5.1599 -2.2828 -1.4425 25 6 6.0586 -3.3331 -1.4431 26 6 7.4176 -3.0800 -1.4448 27 6 7.8779 -1.7766 -1.4400 28 6 6.9792 -0.7262 -1.4441 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.1278 3.6878 0.5128 35 1 4.8061 3.0945 0.5125 36 1 4.7332 2.8893 -1.9576 37 1 3.0549 3.4827 -1.9573 38 1 5.3617 4.9949 -0.9183 39 1 5.4015 4.7840 -3.3395 40 1 3.7231 5.3766 -3.3388 41 1 5.2600 7.0587 -4.7779 42 1 6.0710 9.3593 -7.0560 43 1 3.8693 -0.3007 0.5136 44 1 5.2221 0.8560 0.5130 45 1 5.0807 1.0201 -1.9572 46 1 3.7277 -0.1366 -1.9565 47 1 4.0981 -2.4806 -1.4416 48 1 5.6990 -4.3515 -1.4422 49 1 8.1197 -3.9007 -1.4457 50 1 8.9396 -1.5788 -1.4369 51 1 7.3388 0.2921 -1.4453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162651345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:01 Heat of formation + Delta-G solvation = -55.169040 kcal Electronic energy + Delta-G solvation = -29601.997870 eV Core-core repulsion = 25500.758781 eV Total energy + Delta-G solvation = -4101.239089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.41351 -39.51558 -38.27246 -36.73060 -35.35764 -33.87359 -33.26079 -32.97407 -31.25621 -31.21521 -29.85440 -28.49856 -26.32288 -24.89237 -24.18012 -23.34109 -22.94568 -22.03470 -21.27460 -19.39842 -19.07635 -17.87438 -17.60529 -17.12490 -16.39202 -16.25203 -15.89004 -15.56920 -15.45018 -15.40784 -14.59764 -14.34278 -14.23275 -14.02650 -13.92825 -13.73853 -13.58966 -13.44260 -13.39623 -13.20699 -12.90278 -12.53054 -12.51345 -12.18505 -11.99875 -11.94308 -11.77367 -11.50989 -11.49031 -11.47014 -11.41476 -11.22616 -11.06570 -10.83417 -10.32790 -10.20866 -9.94765 -9.50263 -9.29287 -9.28848 -8.82519 -8.43300 -8.04389 -7.94008 -6.39993 -3.80691 0.95662 1.03038 2.44221 2.69612 3.17793 3.28208 3.35780 3.40757 3.92828 4.13923 4.16578 4.33121 4.41549 4.53726 4.61402 4.64325 4.71978 4.75237 4.78228 4.81940 4.97019 5.05106 5.07386 5.14392 5.16936 5.17849 5.22463 5.28455 5.34477 5.46557 5.50172 5.57262 5.66207 5.68139 5.75916 5.78014 5.87351 5.97472 5.98560 6.03234 6.09216 6.15792 6.22431 6.27328 6.34459 6.63206 7.13594 7.20457 7.57264 7.66726 8.00701 8.08434 8.63162 9.19788 9.56241 10.07686 10.77911 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.002068 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.242635 B =13533.865927 C =15648.673911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.144 4.144 3 C 0.510 3.490 4 O -0.528 6.528 5 N -0.613 5.613 6 C 0.116 3.884 7 C 0.047 3.953 8 N -0.665 5.665 9 C 0.054 3.946 10 C 0.442 3.558 11 O -0.582 6.582 12 N -0.564 5.564 13 C -0.298 4.298 14 H 0.104 0.896 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.116 3.884 22 C -0.105 4.105 23 C -0.080 4.080 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.114 4.114 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -29.548 9.551 31.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.184 4.184 3 C 0.298 3.702 4 O -0.404 6.404 5 N -0.347 5.347 6 C -0.007 4.007 7 C -0.084 4.084 8 N -0.298 5.298 9 C -0.079 4.079 10 C 0.227 3.773 11 O -0.467 6.467 12 N -0.201 5.201 13 C -0.427 4.427 14 H 0.122 0.878 15 C -0.181 4.181 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.008 4.008 22 C -0.143 4.143 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.135 4.135 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.364 -28.304 10.169 30.168 hybrid contribution 1.249 -0.013 -1.119 1.677 sum -1.115 -28.318 9.050 29.750 Atomic orbital electron populations 1.21547 0.93002 1.01502 1.03545 1.21704 0.98642 0.94018 1.04029 1.20820 0.81735 0.91880 0.75747 1.90750 1.54657 1.46537 1.48449 1.47998 1.05805 1.06919 1.73949 1.21441 1.00680 0.81489 0.97066 1.22348 1.00421 0.88899 0.96702 1.59923 1.37642 1.18543 1.13720 1.21650 1.00933 0.95363 0.89979 1.19798 0.84665 0.87806 0.85040 1.90522 1.57044 1.69425 1.29667 1.41867 1.58056 1.13420 1.06763 1.19758 1.39967 0.88450 0.94563 0.87848 1.25271 0.97777 1.00355 0.94651 1.69624 1.49186 1.38090 0.97470 0.85794 0.78157 0.81774 0.78583 1.19203 1.20795 1.20737 1.21623 0.93583 0.89484 0.96085 1.21177 0.98487 0.96762 0.97862 1.19774 0.94085 0.94282 0.99963 1.21061 0.99686 0.92103 1.00636 1.21151 0.93409 0.99031 1.00126 1.21179 0.95746 0.96862 1.00467 1.21193 0.99800 0.92784 0.99727 1.21133 0.92663 0.99449 0.99963 0.92157 0.91938 0.91865 0.89060 0.89064 0.88597 0.90567 0.95514 0.90828 0.83288 0.93966 0.89589 0.77467 0.91944 0.89976 0.89879 0.89958 0.90540 0.86087 0.86119 0.86198 0.85998 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.14 -1.01 4.97 -27.88 -0.14 -1.15 16 3 C 0.51 5.60 7.67 -10.98 -0.08 5.52 16 4 O -0.53 -8.25 15.56 5.55 0.09 -8.16 16 5 N -0.61 -5.79 2.47 -173.69 -0.43 -6.22 16 6 C 0.12 1.33 5.71 -4.04 -0.02 1.31 16 7 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 8 N -0.67 -11.15 6.13 -115.06 -0.70 -11.86 16 9 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 10 C 0.44 10.70 7.82 -10.99 -0.09 10.61 16 11 O -0.58 -16.16 15.78 5.55 0.09 -16.07 16 12 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 13 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 14 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 17 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 C 0.12 0.74 5.24 -4.05 -0.02 0.72 16 22 C -0.10 -0.69 5.67 -27.88 -0.16 -0.85 16 23 C -0.08 -0.56 5.13 -104.62 -0.54 -1.09 16 24 C -0.12 -0.73 9.70 -39.58 -0.38 -1.12 16 25 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 27 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 28 C -0.11 -0.84 9.70 -39.58 -0.38 -1.23 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.09 0.48 7.18 -51.93 -0.37 0.11 16 33 H 0.09 0.46 7.40 -51.93 -0.38 0.08 16 34 H 0.10 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.08 0.74 7.89 -51.92 -0.41 0.33 16 36 H 0.03 0.31 6.26 -51.93 -0.33 -0.02 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.08 0.40 6.44 -51.93 -0.33 0.06 16 44 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 45 H 0.08 0.64 6.20 -51.93 -0.32 0.32 16 46 H 0.08 0.49 7.16 -51.93 -0.37 0.12 16 47 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 48 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 49 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 50 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 422.19 15.07 6.36 6.36 Total: -1.00 -34.70 422.19 -10.04 -44.75 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -8.13 Total: 11.86 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.96 Total: 1.88 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.47 Total: -56.92 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.17 Total: -24.23 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.70 -10.04 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162651345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.421 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds