Wall clock time and date at job start Wed Apr 1 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46972 * 2 1 4 4 O 1.21284 * 119.99857 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99805 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46780 * 269.99277 * 6 5 3 8 8 N 1.46906 * 109.47002 * 179.97438 * 7 6 5 9 9 C 1.46892 * 111.00044 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47182 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99926 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00253 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00351 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99665 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00502 * 179.97438 * 13 12 10 16 16 N 1.31417 * 119.99924 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00318 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47107 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47223 * 120.00030 * 17 15 13 20 20 H 1.48499 * 109.47577 * 240.00253 * 17 15 13 21 21 C 1.46496 * 119.99885 * 359.97438 * 5 3 2 22 22 C 1.52995 * 109.47070 * 90.00634 * 21 5 3 23 23 C 1.50707 * 109.47301 * 179.97438 * 22 21 5 24 24 C 1.38238 * 119.99792 * 90.00016 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.97953 * 23 22 21 29 29 H 1.08997 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47116 * 300.00415 * 1 2 3 31 31 H 1.08999 * 109.47122 * 60.00180 * 1 2 3 32 32 H 1.08996 * 109.47116 * 239.99584 * 2 1 3 33 33 H 1.08999 * 109.47122 * 119.99820 * 2 1 3 34 34 H 1.09003 * 109.47109 * 29.99830 * 6 5 3 35 35 H 1.09008 * 109.46723 * 149.99386 * 6 5 3 36 36 H 1.09003 * 109.47751 * 300.00159 * 7 6 5 37 37 H 1.09004 * 109.46964 * 60.00681 * 7 6 5 38 38 H 1.00912 * 110.99383 * 56.04878 * 8 7 6 39 39 H 1.09000 * 109.47361 * 300.00194 * 9 8 7 40 40 H 1.09000 * 109.47177 * 60.00242 * 9 8 7 41 41 H 0.97001 * 119.99762 * 359.97438 * 12 10 9 42 42 H 0.96996 * 119.99814 * 179.97438 * 16 15 13 43 43 H 1.08995 * 109.47623 * 330.00403 * 21 5 3 44 44 H 1.09004 * 109.47046 * 210.00410 * 21 5 3 45 45 H 1.09005 * 109.47610 * 60.00011 * 22 21 5 46 46 H 1.09000 * 109.47256 * 299.99352 * 22 21 5 47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 4.0153 3.5287 -1.4437 8 7 4.5044 4.9140 -1.4444 9 6 4.6789 5.4100 -2.8159 10 6 5.1810 6.8304 -2.7764 11 8 5.3740 7.3759 -1.7104 12 7 5.4147 7.4948 -3.9254 13 6 5.8710 8.7871 -3.8895 14 1 6.0428 9.2728 -2.9402 15 6 6.1124 9.4720 -5.0741 16 7 5.9028 8.8811 -6.2291 17 14 6.7334 11.2330 -5.0250 18 1 6.8864 11.6647 -3.6124 19 1 8.0475 11.3138 -5.7119 20 1 5.7606 12.1204 -5.7116 21 6 4.3094 0.5537 -0.0005 22 6 4.6404 0.1657 -1.4430 23 6 5.6202 -0.9793 -1.4430 24 6 5.1599 -2.2828 -1.4425 25 6 6.0586 -3.3331 -1.4431 26 6 7.4176 -3.0800 -1.4448 27 6 7.8779 -1.7766 -1.4400 28 6 6.9792 -0.7262 -1.4441 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.1278 3.6878 0.5128 35 1 4.8061 3.0945 0.5125 36 1 4.7332 2.8893 -1.9576 37 1 3.0549 3.4827 -1.9573 38 1 5.3617 4.9949 -0.9183 39 1 5.4015 4.7840 -3.3395 40 1 3.7231 5.3766 -3.3388 41 1 5.2600 7.0587 -4.7779 42 1 6.0710 9.3593 -7.0560 43 1 3.8693 -0.3007 0.5136 44 1 5.2221 0.8560 0.5130 45 1 5.0807 1.0201 -1.9572 46 1 3.7277 -0.1366 -1.9565 47 1 4.0981 -2.4806 -1.4416 48 1 5.6990 -4.3515 -1.4422 49 1 8.1197 -3.9007 -1.4457 50 1 8.9396 -1.5788 -1.4369 51 1 7.3388 0.2921 -1.4453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162651345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:00 Heat of formation + Delta-G solvation = -77.959440 kcal Electronic energy + Delta-G solvation = -29602.986136 eV Core-core repulsion = 25500.758781 eV Total energy + Delta-G solvation = -4102.227355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19771 -40.17970 -40.02413 -37.72575 -36.55665 -35.83781 -33.99884 -33.60614 -33.28660 -31.69822 -30.90710 -29.20361 -27.83296 -26.12098 -25.20465 -24.27310 -23.39634 -23.01040 -21.79572 -21.16005 -20.03945 -19.86357 -18.37272 -17.90713 -17.57759 -17.27306 -16.95702 -16.71282 -16.46240 -16.04739 -15.92042 -15.87370 -15.40866 -15.24631 -14.93946 -14.58810 -14.54801 -14.33307 -14.06588 -13.96940 -13.90927 -13.61387 -13.46590 -13.40790 -13.14798 -13.06899 -12.89123 -12.66432 -12.55704 -12.42400 -12.39079 -12.13012 -12.12121 -11.94954 -11.79307 -11.57272 -11.53091 -10.82590 -10.42023 -10.04145 -9.95415 -9.75140 -9.43367 -9.38443 -8.48698 -5.97739 0.48859 0.57019 1.35486 1.40849 1.55399 1.62726 1.91450 2.01397 2.28498 2.92004 2.97802 3.18198 3.52191 3.53245 3.84135 3.97644 4.03015 4.08240 4.17596 4.21250 4.22393 4.24131 4.27306 4.34432 4.37074 4.39180 4.43428 4.54582 4.58972 4.64179 4.67114 4.71218 4.83728 4.88021 4.99354 5.01953 5.07584 5.10440 5.24027 5.28842 5.35819 5.39345 5.49560 5.64816 5.70871 5.77419 5.82793 6.04445 6.19194 6.34335 6.41261 6.57185 7.10064 7.19836 7.52765 8.07814 8.69021 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.002068 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.242635 B =13533.865927 C =15648.673911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.501 3.499 4 O -0.586 6.586 5 N -0.606 5.606 6 C 0.121 3.879 7 C 0.058 3.942 8 N -0.683 5.683 9 C 0.068 3.932 10 C 0.438 3.562 11 O -0.622 6.622 12 N -0.572 5.572 13 C -0.334 4.334 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.995 3.005 18 H -0.273 1.273 19 H -0.269 1.269 20 H -0.271 1.271 21 C 0.115 3.885 22 C -0.097 4.097 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.132 4.132 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.349 0.651 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.134 0.866 50 H 0.129 0.871 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 -31.984 9.306 33.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.292 3.708 4 O -0.465 6.465 5 N -0.338 5.338 6 C -0.003 4.003 7 C -0.072 4.072 8 N -0.317 5.317 9 C -0.064 4.064 10 C 0.225 3.775 11 O -0.509 6.509 12 N -0.210 5.210 13 C -0.463 4.463 14 H 0.097 0.903 15 C -0.214 4.214 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.198 1.198 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.007 4.007 22 C -0.135 4.135 23 C -0.086 4.086 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.149 4.149 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.168 0.832 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.152 0.848 50 H 0.147 0.853 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.835 -30.800 9.905 32.405 hybrid contribution 1.104 0.667 -1.030 1.651 sum -0.731 -30.133 8.875 31.421 Atomic orbital electron populations 1.21555 0.93773 1.02660 1.01661 1.21776 0.97902 0.91362 1.06518 1.21658 0.81637 0.93097 0.74430 1.90729 1.56120 1.48541 1.51156 1.48046 1.06066 1.06751 1.72967 1.21253 1.00759 0.82477 0.95802 1.22286 0.99748 0.87314 0.97889 1.59874 1.37896 1.21070 1.12818 1.21484 1.01705 0.91729 0.91489 1.20806 0.83056 0.89738 0.83880 1.90489 1.58390 1.71000 1.30973 1.41933 1.58478 1.13055 1.07493 1.19715 1.42377 0.90010 0.94211 0.90276 1.26080 0.97225 1.04135 0.93951 1.69682 1.48953 1.39559 0.97947 0.84846 0.78200 0.76827 0.78302 1.19777 1.19366 1.19656 1.21836 0.93325 0.89059 0.96473 1.21072 0.98552 0.96233 0.97677 1.19802 0.93788 0.94698 1.00357 1.21337 1.00888 0.91695 0.99941 1.21458 0.93312 1.00096 0.99532 1.21451 0.96510 0.97081 1.00188 1.21393 1.00325 0.93158 1.00089 1.21274 0.93271 0.99632 1.00717 0.89331 0.93740 0.93956 0.86512 0.86175 0.91779 0.88520 0.93127 0.92650 0.83189 0.91157 0.88648 0.76974 0.91248 0.87489 0.89189 0.91319 0.89954 0.84005 0.84270 0.84827 0.85325 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.20 71.98 0.66 -1.29 16 2 C -0.14 -1.54 4.97 29.85 0.15 -1.40 16 3 C 0.50 10.60 7.67 87.66 0.67 11.27 16 4 O -0.59 -18.92 15.56 -3.04 -0.05 -18.97 16 5 N -0.61 -10.60 2.47 -821.81 -2.03 -12.63 16 6 C 0.12 2.73 5.71 86.38 0.49 3.22 16 7 C 0.06 1.47 6.01 86.30 0.52 1.99 16 8 N -0.68 -22.83 6.13 -517.93 -3.17 -26.00 16 9 C 0.07 2.48 6.17 85.56 0.53 3.01 16 10 C 0.44 21.58 7.82 87.66 0.69 22.27 16 11 O -0.62 -35.51 15.78 -3.07 -0.05 -35.56 16 12 N -0.57 -30.21 5.29 -306.99 -1.62 -31.84 16 13 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 14 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 15 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 16 N -0.92 -50.42 13.05 21.66 0.28 -50.13 16 17 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C 0.12 1.16 5.24 86.38 0.45 1.61 16 22 C -0.10 -1.04 5.67 29.85 0.17 -0.87 16 23 C -0.09 -0.99 5.13 -19.86 -0.10 -1.09 16 24 C -0.12 -1.15 9.70 22.27 0.22 -0.93 16 25 C -0.13 -1.23 10.05 22.27 0.22 -1.00 16 26 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 27 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 28 C -0.13 -1.75 9.70 22.27 0.22 -1.54 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 32 H 0.12 0.77 7.18 -2.39 -0.02 0.75 16 33 H 0.12 0.71 7.40 -2.39 -0.02 0.69 16 34 H 0.06 1.89 7.42 -2.39 -0.02 1.87 16 35 H 0.10 1.77 7.89 -2.38 -0.02 1.75 16 36 H 0.05 1.08 6.26 -2.39 -0.01 1.06 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.35 11.51 8.43 -89.68 -0.76 10.76 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 41 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 42 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.11 0.60 6.44 -2.39 -0.02 0.58 16 44 H 0.09 0.84 7.89 -2.38 -0.02 0.82 16 45 H 0.07 0.93 6.20 -2.38 -0.01 0.92 16 46 H 0.08 0.80 7.16 -2.39 -0.02 0.78 16 47 H 0.14 0.69 8.06 -2.91 -0.02 0.67 16 48 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 49 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 50 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 51 H 0.12 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -77.98 422.19 1.45 -76.53 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.54 Total: 39.28 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.61 Total: 13.69 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -6.54 Total: -120.60 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -0.10 Total: -54.53 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -77.98 1.45 -76.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162651345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.431 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds