Wall clock time and date at job start Wed Apr 1 2020 04:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 O 1.42897 * 109.47037 * 239.99719 * 2 1 3 5 5 C 1.35499 * 117.00108 * 210.00089 * 4 2 1 6 6 C 1.39169 * 119.52751 * 179.72659 * 5 4 2 7 7 C 1.37957 * 119.26251 * 179.74668 * 6 5 4 8 8 C 1.40285 * 118.35649 * 0.52210 * 7 6 5 9 9 C 1.47615 * 120.49656 * 179.77150 * 8 7 6 10 10 O 1.21576 * 119.99986 * 221.16297 * 9 8 7 11 11 N 1.34777 * 120.00238 * 41.16250 * 9 8 7 12 12 C 1.46932 * 120.62706 * 5.56618 * 11 9 8 13 13 C 1.53631 * 108.53651 * 126.37385 * 12 11 9 14 14 C 1.53039 * 109.24473 * 54.85550 * 13 12 11 15 15 C 1.52998 * 109.45920 * 178.48594 * 14 13 12 16 16 N 1.46494 * 109.47310 * 295.06705 * 15 14 13 17 17 C 1.36937 * 119.99775 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99993 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99880 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00340 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46632 * 60.00257 * 21 19 17 23 23 H 1.48496 * 109.47139 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47091 * 300.00852 * 21 19 17 25 25 C 1.53035 * 109.53767 * 298.51118 * 14 13 12 26 26 C 1.46923 * 120.63095 * 185.85398 * 11 9 8 27 27 C 1.39521 * 119.00392 * 359.74348 * 8 7 6 28 28 N 1.31670 * 120.62666 * 359.97438 * 27 8 7 29 29 H 1.08997 * 109.47314 * 59.99861 * 1 2 3 30 30 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47158 * 300.00040 * 1 2 3 32 32 H 1.09008 * 109.46848 * 120.00129 * 2 1 3 33 33 H 1.08993 * 109.46901 * 299.99810 * 3 2 1 34 34 H 1.08997 * 109.46952 * 60.00285 * 3 2 1 35 35 H 1.08998 * 109.46975 * 179.97438 * 3 2 1 36 36 H 1.08002 * 120.36716 * 0.02562 * 6 5 4 37 37 H 1.07996 * 120.81813 * 180.26707 * 7 6 5 38 38 H 1.09003 * 109.58651 * 246.20021 * 12 11 9 39 39 H 1.08991 * 109.58783 * 6.63335 * 12 11 9 40 40 H 1.08994 * 109.63239 * 294.85910 * 13 12 11 41 41 H 1.09004 * 109.42563 * 174.72381 * 13 12 11 42 42 H 1.09003 * 109.44718 * 58.51960 * 14 13 12 43 43 H 1.09000 * 109.46814 * 55.07114 * 15 14 13 44 44 H 1.09001 * 109.46974 * 175.06562 * 15 14 13 45 45 H 0.97001 * 120.00339 * 0.02562 * 16 15 14 46 46 H 0.96999 * 119.99448 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.49816 * 301.41073 * 25 14 13 48 48 H 1.08996 * 109.52781 * 181.33245 * 25 14 13 49 49 H 1.09005 * 109.58761 * 353.36920 * 26 11 9 50 50 H 1.09000 * 109.58812 * 113.65247 * 26 11 9 51 51 H 1.07996 * 119.68633 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.1971 -1.3122 -1.0653 6 6 3.7079 -1.9902 -2.1682 7 6 4.9233 -2.6340 -2.0604 8 6 5.5950 -2.5878 -0.8297 9 6 6.8960 -3.2644 -0.6604 10 8 7.1342 -3.8764 0.3627 11 7 7.8196 -3.2039 -1.6401 12 6 7.5964 -2.3696 -2.8288 13 6 8.8008 -1.4314 -3.0002 14 6 10.0849 -2.2626 -3.0482 15 6 11.2844 -1.3359 -3.2566 16 7 11.1852 -0.6970 -4.5712 17 6 12.1531 0.1810 -4.9804 18 1 12.9898 0.4020 -4.3343 19 6 12.0595 0.7860 -6.2262 20 7 11.0400 0.5162 -7.0139 21 14 13.3802 1.9832 -6.7849 22 1 14.6932 1.2903 -6.8204 23 1 13.0492 2.4875 -8.1418 24 1 13.4479 3.1236 -5.8362 25 6 10.2514 -3.0237 -1.7310 26 6 9.0660 -3.9757 -1.5425 27 6 5.0153 -1.8921 0.2317 28 7 3.8555 -1.2867 0.0831 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.1611 -2.0083 -3.0993 37 1 5.3451 -3.1640 -2.9015 38 1 7.4973 -3.0058 -3.7083 39 1 6.6887 -1.7809 -2.6969 40 1 8.8473 -0.7381 -2.1605 41 1 8.6949 -0.8715 -3.9295 42 1 10.0269 -2.9728 -3.8730 43 1 11.2916 -0.5709 -2.4803 44 1 12.2055 -1.9164 -3.2033 45 1 10.4336 -0.8952 -5.1514 46 1 10.9745 0.9393 -7.8843 47 1 10.2843 -2.3153 -0.9031 48 1 11.1780 -3.5971 -1.7561 49 1 9.1282 -4.4469 -0.5616 50 1 9.0831 -4.7418 -2.3177 51 1 5.5230 -1.8490 1.1838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205422285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:49 Heat of formation + Delta-G solvation = -29.836413 kcal Electronic energy + Delta-G solvation = -30415.610927 eV Core-core repulsion = 26315.470343 eV Total energy + Delta-G solvation = -4100.140584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28991 -40.12413 -38.45829 -37.58414 -35.02396 -33.69857 -33.41287 -32.55525 -31.28142 -30.43989 -30.22402 -27.64808 -26.83029 -24.73198 -24.53398 -23.46520 -23.19475 -21.82596 -21.48122 -20.45096 -19.38950 -18.85465 -17.64915 -17.12008 -16.95904 -16.29223 -15.96629 -15.35339 -15.03807 -14.83831 -14.77403 -14.65463 -14.28045 -14.09171 -13.91952 -13.68143 -13.59438 -13.42021 -13.21726 -12.86937 -12.81082 -12.68350 -12.64836 -12.41885 -12.25664 -12.23793 -11.81790 -11.31742 -11.22731 -11.11429 -11.01616 -10.83820 -10.49797 -10.43434 -10.33137 -10.30865 -10.09920 -9.98702 -9.72313 -9.65980 -8.88269 -8.87925 -8.63662 -6.92949 -5.78369 -3.06353 0.54389 0.84603 2.54931 2.61784 2.87510 3.43046 3.45833 3.47511 3.48395 3.88763 4.26766 4.45546 4.50224 4.57630 4.59016 4.64699 4.70835 4.84274 4.87730 4.99625 5.05945 5.12497 5.17394 5.27893 5.31797 5.35491 5.39296 5.43326 5.45325 5.52372 5.53622 5.60866 5.68511 5.73879 5.76325 5.83528 5.91794 5.93659 6.03043 6.06992 6.17263 6.25649 6.40629 6.44681 6.60544 6.78667 6.88767 6.90313 7.26159 7.45649 7.68630 8.00505 8.41208 9.52269 10.10227 10.44934 11.44574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.002312 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.705275 B =12109.048062 C =13972.471085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.170 4.170 4 O -0.298 6.298 5 C 0.343 3.657 6 C -0.196 4.196 7 C -0.009 4.009 8 C -0.221 4.221 9 C 0.570 3.430 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.097 3.903 13 C -0.124 4.124 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.126 4.126 26 C 0.113 3.887 27 C 0.198 3.802 28 N -0.543 5.543 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.828 -6.292 13.584 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.227 4.227 4 O -0.205 6.205 5 C 0.164 3.836 6 C -0.217 4.217 7 C -0.034 4.034 8 C -0.227 4.227 9 C 0.358 3.642 10 O -0.420 6.420 11 N -0.333 5.333 12 C -0.025 4.025 13 C -0.162 4.162 14 C -0.113 4.113 15 C 0.030 3.970 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.164 4.164 26 C -0.009 4.009 27 C 0.041 3.959 28 N -0.266 5.266 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.125 -6.017 14.579 25.569 hybrid contribution 0.941 0.381 -1.233 1.597 sum -19.184 -5.636 13.346 24.040 Atomic orbital electron populations 1.21915 0.92729 1.03032 1.03128 1.22421 0.94531 0.92919 0.87782 1.22224 1.02345 0.95383 1.02751 1.86278 1.31364 1.63847 1.38987 1.20047 0.85616 0.88254 0.89657 1.21021 0.97960 1.03206 0.99476 1.21678 0.92189 0.93368 0.96158 1.20722 0.98486 1.07109 0.96386 1.17956 0.83264 0.80084 0.82911 1.90777 1.79625 1.43867 1.27726 1.48062 1.18771 1.46071 1.20442 1.22277 0.99887 0.93438 0.86932 1.22001 0.93143 0.97440 1.03645 1.21311 0.95718 0.97507 0.96748 1.20668 0.93989 0.93227 0.89090 1.42359 1.28373 1.51968 1.14898 1.19190 1.01623 1.16911 0.99262 0.91321 1.24726 0.98324 1.00905 0.97068 1.69642 1.30892 1.47274 1.10563 0.86269 0.81247 0.81060 0.77629 1.21294 1.21692 1.21308 1.21909 0.97454 0.98652 0.98431 1.21668 0.82454 0.93548 1.03183 1.22505 0.88192 0.87578 0.97674 1.67342 1.10506 1.24443 1.24328 0.91526 0.91812 0.90382 0.89074 0.91844 0.90972 0.91814 0.83330 0.83216 0.90834 0.89564 0.91734 0.89292 0.90933 0.96445 0.96333 0.78292 0.93495 0.91504 0.90542 0.89063 0.91290 0.81500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 37.16 0.36 -0.55 16 2 C 0.08 0.66 3.10 -26.73 -0.08 0.57 16 3 C -0.17 -1.30 9.53 37.16 0.35 -0.95 16 4 O -0.30 -3.04 9.75 -18.19 -0.18 -3.22 16 5 C 0.34 3.69 7.46 -16.96 -0.13 3.56 16 6 C -0.20 -1.82 10.02 -39.34 -0.39 -2.22 16 7 C -0.01 -0.08 7.50 -38.92 -0.29 -0.37 16 8 C -0.22 -2.48 5.10 -104.82 -0.53 -3.02 16 9 C 0.57 7.43 7.32 -12.43 -0.09 7.34 16 10 O -0.54 -8.61 16.37 5.30 0.09 -8.52 16 11 N -0.60 -7.20 2.97 -173.69 -0.52 -7.71 16 12 C 0.10 1.09 4.98 -3.48 -0.02 1.07 16 13 C -0.12 -1.76 5.26 -26.38 -0.14 -1.90 16 14 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 15 C 0.16 3.07 5.65 -4.05 -0.02 3.05 16 16 N -0.73 -17.96 5.32 -59.91 -0.32 -18.28 16 17 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 C -0.13 -1.57 5.36 -26.61 -0.14 -1.72 16 26 C 0.11 1.32 6.44 -3.71 -0.02 1.30 16 27 C 0.20 2.20 10.82 -17.14 -0.19 2.01 16 28 N -0.54 -6.08 8.61 -12.97 -0.11 -6.19 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.81 6.97 -51.92 -0.36 0.45 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.12 6.75 -52.49 -0.35 0.77 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.89 4.77 -51.93 -0.25 0.64 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 9.73 6.84 -40.82 -0.28 9.45 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 408.45 15.07 6.16 6.16 Total: -1.00 -32.60 408.45 -9.25 -41.85 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.29 Total: 6.40 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.79 Total: -0.70 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.22 Total: -59.22 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.60 -9.25 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205422285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.014 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds