Wall clock time and date at job start Wed Apr 1 2020 04:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 O 1.42897 * 109.47037 * 239.99719 * 2 1 3 5 5 C 1.35499 * 117.00108 * 210.00089 * 4 2 1 6 6 C 1.39169 * 119.52751 * 179.72659 * 5 4 2 7 7 C 1.37957 * 119.26251 * 179.74668 * 6 5 4 8 8 C 1.40285 * 118.35649 * 0.52210 * 7 6 5 9 9 C 1.47615 * 120.49656 * 179.77150 * 8 7 6 10 10 O 1.21576 * 119.99986 * 221.16297 * 9 8 7 11 11 N 1.34777 * 120.00238 * 41.16250 * 9 8 7 12 12 C 1.46932 * 120.62706 * 5.56618 * 11 9 8 13 13 C 1.53631 * 108.53651 * 126.37385 * 12 11 9 14 14 C 1.53039 * 109.24473 * 54.85550 * 13 12 11 15 15 C 1.52998 * 109.45920 * 178.48594 * 14 13 12 16 16 N 1.46494 * 109.47310 * 295.06705 * 15 14 13 17 17 C 1.36937 * 119.99775 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99993 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99880 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00340 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46632 * 60.00257 * 21 19 17 23 23 H 1.48496 * 109.47139 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47091 * 300.00852 * 21 19 17 25 25 C 1.53035 * 109.53767 * 298.51118 * 14 13 12 26 26 C 1.46923 * 120.63095 * 185.85398 * 11 9 8 27 27 C 1.39521 * 119.00392 * 359.74348 * 8 7 6 28 28 N 1.31670 * 120.62666 * 359.97438 * 27 8 7 29 29 H 1.08997 * 109.47314 * 59.99861 * 1 2 3 30 30 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47158 * 300.00040 * 1 2 3 32 32 H 1.09008 * 109.46848 * 120.00129 * 2 1 3 33 33 H 1.08993 * 109.46901 * 299.99810 * 3 2 1 34 34 H 1.08997 * 109.46952 * 60.00285 * 3 2 1 35 35 H 1.08998 * 109.46975 * 179.97438 * 3 2 1 36 36 H 1.08002 * 120.36716 * 0.02562 * 6 5 4 37 37 H 1.07996 * 120.81813 * 180.26707 * 7 6 5 38 38 H 1.09003 * 109.58651 * 246.20021 * 12 11 9 39 39 H 1.08991 * 109.58783 * 6.63335 * 12 11 9 40 40 H 1.08994 * 109.63239 * 294.85910 * 13 12 11 41 41 H 1.09004 * 109.42563 * 174.72381 * 13 12 11 42 42 H 1.09003 * 109.44718 * 58.51960 * 14 13 12 43 43 H 1.09000 * 109.46814 * 55.07114 * 15 14 13 44 44 H 1.09001 * 109.46974 * 175.06562 * 15 14 13 45 45 H 0.97001 * 120.00339 * 0.02562 * 16 15 14 46 46 H 0.96999 * 119.99448 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.49816 * 301.41073 * 25 14 13 48 48 H 1.08996 * 109.52781 * 181.33245 * 25 14 13 49 49 H 1.09005 * 109.58761 * 353.36920 * 26 11 9 50 50 H 1.09000 * 109.58812 * 113.65247 * 26 11 9 51 51 H 1.07996 * 119.68633 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.1971 -1.3122 -1.0653 6 6 3.7079 -1.9902 -2.1682 7 6 4.9233 -2.6340 -2.0604 8 6 5.5950 -2.5878 -0.8297 9 6 6.8960 -3.2644 -0.6604 10 8 7.1342 -3.8764 0.3627 11 7 7.8196 -3.2039 -1.6401 12 6 7.5964 -2.3696 -2.8288 13 6 8.8008 -1.4314 -3.0002 14 6 10.0849 -2.2626 -3.0482 15 6 11.2844 -1.3359 -3.2566 16 7 11.1852 -0.6970 -4.5712 17 6 12.1531 0.1810 -4.9804 18 1 12.9898 0.4020 -4.3343 19 6 12.0595 0.7860 -6.2262 20 7 11.0400 0.5162 -7.0139 21 14 13.3802 1.9832 -6.7849 22 1 14.6932 1.2903 -6.8204 23 1 13.0492 2.4875 -8.1418 24 1 13.4479 3.1236 -5.8362 25 6 10.2514 -3.0237 -1.7310 26 6 9.0660 -3.9757 -1.5425 27 6 5.0153 -1.8921 0.2317 28 7 3.8555 -1.2867 0.0831 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.1611 -2.0083 -3.0993 37 1 5.3451 -3.1640 -2.9015 38 1 7.4973 -3.0058 -3.7083 39 1 6.6887 -1.7809 -2.6969 40 1 8.8473 -0.7381 -2.1605 41 1 8.6949 -0.8715 -3.9295 42 1 10.0269 -2.9728 -3.8730 43 1 11.2916 -0.5709 -2.4803 44 1 12.2055 -1.9164 -3.2033 45 1 10.4336 -0.8952 -5.1514 46 1 10.9745 0.9393 -7.8843 47 1 10.2843 -2.3153 -0.9031 48 1 11.1780 -3.5971 -1.7561 49 1 9.1282 -4.4469 -0.5616 50 1 9.0831 -4.7418 -2.3177 51 1 5.5230 -1.8490 1.1838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205422285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:48 Heat of formation + Delta-G solvation = -50.335248 kcal Electronic energy + Delta-G solvation = -30416.499823 eV Core-core repulsion = 26315.470343 eV Total energy + Delta-G solvation = -4101.029480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.13097 -41.04914 -39.32277 -38.69169 -36.58631 -34.74296 -34.29870 -33.75791 -32.39833 -31.90544 -31.24126 -28.30741 -28.15714 -26.00430 -25.34672 -24.86556 -24.24632 -23.14807 -22.18706 -21.64122 -20.43924 -19.60035 -19.17307 -18.45680 -17.88045 -17.25736 -16.75429 -16.71013 -16.27096 -15.83455 -15.67635 -15.53296 -15.45518 -15.35400 -15.27101 -14.89997 -14.61370 -14.42846 -14.15965 -13.99603 -13.84305 -13.65238 -13.53628 -13.30961 -13.19240 -13.07631 -12.91130 -12.87193 -12.72045 -12.24258 -12.20324 -11.95969 -11.94514 -11.78031 -11.67691 -11.58258 -11.31376 -11.23695 -10.95411 -10.85034 -10.62293 -9.79266 -9.55274 -8.96829 -7.94180 -5.21656 -0.29038 0.08544 1.47790 1.49962 1.56149 1.58046 1.86543 1.97899 2.56763 2.63263 3.10802 3.36984 3.39129 3.70899 3.77202 3.80737 3.84899 3.89809 3.95855 3.99608 4.02179 4.10633 4.25706 4.30798 4.36440 4.41952 4.56845 4.59521 4.67010 4.70156 4.71588 4.79870 4.81060 4.84024 4.87120 4.89777 4.94018 4.96758 5.04006 5.10048 5.17221 5.18856 5.24809 5.27156 5.32780 5.48076 5.54819 5.56444 6.13840 6.28426 6.29240 6.64838 7.01058 7.35795 8.12185 8.36669 9.28853 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.002312 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.705275 B =12109.048062 C =13972.471085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.166 4.166 4 O -0.305 6.305 5 C 0.331 3.669 6 C -0.193 4.193 7 C -0.002 4.002 8 C -0.232 4.232 9 C 0.572 3.428 10 O -0.575 6.575 11 N -0.599 5.599 12 C 0.106 3.894 13 C -0.119 4.119 14 C -0.083 4.083 15 C 0.156 3.844 16 N -0.741 5.741 17 C -0.247 4.247 18 H 0.070 0.930 19 C -0.073 4.073 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.281 1.281 25 C -0.116 4.116 26 C 0.115 3.885 27 C 0.189 3.811 28 N -0.553 5.553 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.011 0.989 44 H 0.019 0.981 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.057 0.943 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.533 -6.694 13.421 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.017 3.983 3 C -0.223 4.223 4 O -0.212 6.212 5 C 0.152 3.848 6 C -0.213 4.213 7 C -0.027 4.027 8 C -0.238 4.238 9 C 0.361 3.639 10 O -0.456 6.456 11 N -0.330 5.330 12 C -0.016 4.016 13 C -0.158 4.158 14 C -0.102 4.102 15 C 0.030 3.970 16 N -0.384 5.384 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.207 1.207 25 C -0.155 4.155 26 C -0.006 4.006 27 C 0.032 3.968 28 N -0.277 5.277 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.037 0.963 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.107 0.893 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -20.819 -6.425 14.440 26.139 hybrid contribution 1.152 0.527 -1.116 1.688 sum -19.667 -5.897 13.325 24.477 Atomic orbital electron populations 1.21918 0.90854 1.03339 1.04169 1.22615 0.95961 0.92792 0.86906 1.22200 1.01012 0.95374 1.03725 1.86277 1.31128 1.63920 1.39896 1.20368 0.85867 0.88557 0.90017 1.21304 0.97886 1.02245 0.99879 1.21902 0.91926 0.92916 0.95962 1.20654 0.98053 1.07699 0.97358 1.18164 0.83811 0.79557 0.82382 1.90758 1.80394 1.45430 1.28993 1.48103 1.18728 1.45793 1.20374 1.22269 0.98702 0.93258 0.87401 1.21887 0.94304 0.97659 1.01916 1.21195 0.94022 0.96775 0.98211 1.20820 0.96173 0.93524 0.86526 1.42526 1.27538 1.51865 1.16490 1.19567 1.02057 1.16951 0.99320 0.91162 1.25499 1.00555 1.03018 0.97438 1.69783 1.32606 1.48542 1.10704 0.85269 0.78940 0.79056 0.76841 1.20524 1.21996 1.20683 1.21820 0.98743 0.98510 0.96414 1.21696 0.81699 0.93514 1.03740 1.22586 0.88357 0.87896 0.97990 1.67332 1.10596 1.24772 1.24961 0.91268 0.91872 0.88532 0.90002 0.91654 0.89213 0.93784 0.81078 0.80965 0.88616 0.88387 0.92939 0.91545 0.90646 0.97153 0.96293 0.79038 0.93960 0.92378 0.89211 0.89422 0.89297 0.81382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.56 71.98 0.69 -0.85 16 2 C 0.07 1.15 3.10 30.60 0.09 1.25 16 3 C -0.17 -2.44 9.53 71.98 0.69 -1.76 16 4 O -0.31 -5.97 9.75 -88.00 -0.86 -6.83 16 5 C 0.33 6.84 7.46 84.83 0.63 7.47 16 6 C -0.19 -3.23 10.02 22.43 0.22 -3.01 16 7 C 0.00 -0.03 7.50 22.70 0.17 0.14 16 8 C -0.23 -4.97 5.10 -19.99 -0.10 -5.08 16 9 C 0.57 14.32 7.32 86.72 0.63 14.96 16 10 O -0.57 -18.07 16.37 -3.96 -0.06 -18.13 16 11 N -0.60 -13.30 2.97 -821.71 -2.44 -15.74 16 12 C 0.11 2.15 4.98 86.51 0.43 2.59 16 13 C -0.12 -3.31 5.26 30.82 0.16 -3.15 16 14 C -0.08 -2.40 2.19 -10.77 -0.02 -2.42 16 15 C 0.16 6.03 5.65 86.38 0.49 6.52 16 16 N -0.74 -36.53 5.32 -343.47 -1.83 -38.36 16 17 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 18 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.97 -57.71 13.06 21.65 0.28 -57.42 16 21 Si 0.97 45.73 29.55 68.60 2.03 47.75 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C -0.12 -2.73 5.36 30.67 0.16 -2.57 16 26 C 0.12 2.45 6.44 86.36 0.56 3.01 16 27 C 0.19 4.19 10.82 85.03 0.92 5.11 16 28 N -0.55 -12.31 8.61 -307.82 -2.65 -14.96 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 1.44 6.97 -2.38 -0.02 1.42 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.17 2.02 6.75 -2.91 -0.02 2.00 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.81 4.77 -2.39 -0.01 1.80 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 2.17 7.15 -2.39 -0.02 2.15 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.38 19.32 6.84 -92.71 -0.63 18.69 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.09 2.00 7.00 -2.38 -0.02 1.99 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -69.99 408.45 1.80 -68.19 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.29 Total: 29.78 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 7.03 Total: 5.72 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -6.63 Total: -126.48 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.92 Total: -24.96 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.99 1.80 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205422285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.859 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds