Wall clock time and date at job start Wed Apr 1 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00207 * 2 1 4 4 C 1.53003 * 109.47027 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47185 * 65.00392 * 4 3 2 6 6 C 1.34774 * 120.00294 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99853 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00483 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.50023 * 59.99987 * 8 6 5 10 10 C 1.53117 * 109.50501 * 299.92449 * 8 6 5 11 11 C 1.53118 * 109.15874 * 297.71021 * 10 8 6 12 12 C 1.53036 * 109.28036 * 302.34523 * 11 10 8 13 13 H 1.09000 * 109.46242 * 299.17703 * 12 11 10 14 14 C 1.52994 * 109.46960 * 179.19263 * 12 11 10 15 15 N 1.46849 * 109.52376 * 59.17726 * 12 11 10 16 16 C 1.38816 * 111.00410 * 174.16368 * 15 12 11 17 17 C 1.39803 * 119.58814 * 219.00076 * 16 15 12 18 18 C 1.38591 * 119.49197 * 179.78902 * 17 16 15 19 19 C 1.38390 * 118.68351 * 0.47729 * 18 17 16 20 20 C 1.40566 * 119.14624 * 359.74891 * 19 18 17 21 21 C 1.41311 * 119.78163 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99801 * 154.79208 * 21 20 19 23 23 C 1.40021 * 120.00221 * 334.79511 * 21 20 19 24 24 N 1.30750 * 120.00168 * 340.28558 * 23 21 20 25 25 Si 1.86806 * 120.00142 * 160.28815 * 23 21 20 26 26 H 1.48499 * 109.47292 * 94.78331 * 25 23 21 27 27 H 1.48493 * 109.47120 * 214.78545 * 25 23 21 28 28 H 1.48500 * 109.47025 * 334.78298 * 25 23 21 29 29 N 1.31959 * 119.58637 * 39.27492 * 16 15 12 30 30 C 1.46930 * 111.22082 * 298.26269 * 15 12 11 31 31 H 1.08993 * 109.47102 * 300.00179 * 1 2 3 32 32 H 1.09000 * 109.46847 * 60.00239 * 1 2 3 33 33 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46919 * 59.99695 * 3 2 1 35 35 H 1.08996 * 109.47235 * 299.99760 * 3 2 1 36 36 H 1.09008 * 109.46800 * 184.99868 * 4 3 2 37 37 H 1.09001 * 109.47484 * 304.99674 * 4 3 2 38 38 H 0.97006 * 119.99789 * 359.97438 * 5 4 3 39 39 H 1.09005 * 109.52761 * 57.61139 * 10 8 6 40 40 H 1.08997 * 109.52615 * 177.80570 * 10 8 6 41 41 H 1.09001 * 109.50641 * 62.28745 * 11 10 8 42 42 H 1.09003 * 109.50606 * 182.36733 * 11 10 8 43 43 H 1.09005 * 109.47007 * 59.70376 * 14 12 11 44 44 H 1.08994 * 109.48047 * 179.70395 * 14 12 11 45 45 H 1.08999 * 109.47385 * 299.71431 * 14 12 11 46 46 H 1.08004 * 120.25130 * 359.97438 * 17 16 15 47 47 H 1.08001 * 120.65937 * 180.22933 * 18 17 16 48 48 H 1.07997 * 120.42997 * 179.77187 * 19 18 17 49 49 H 0.96993 * 120.00161 * 180.02562 * 24 23 21 50 50 H 1.09006 * 109.45290 * 301.73244 * 30 15 12 51 51 H 1.09004 * 109.51868 * 181.73777 * 30 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2895 0.3559 -1.4738 7 8 6.1057 0.6829 -0.6384 8 6 5.7434 -0.2830 -2.7609 9 1 5.4279 0.3322 -3.6036 10 6 5.1236 -1.6776 -2.8858 11 6 5.6186 -2.5527 -1.7310 12 6 7.1476 -2.6102 -1.7600 13 1 7.4767 -3.0492 -2.7019 14 6 7.6478 -3.4674 -0.5957 15 7 7.6922 -1.2520 -1.6368 16 6 9.0759 -1.2787 -1.5282 17 6 9.7170 -0.3937 -0.6563 18 6 11.0982 -0.4251 -0.5462 19 6 11.8055 -1.3318 -1.3161 20 6 11.1037 -2.1924 -2.1780 21 6 11.8126 -3.1230 -2.9706 22 1 11.3260 -4.0263 -3.3078 23 6 13.1457 -2.8741 -3.3189 24 7 13.6206 -1.6573 -3.2600 25 14 14.2460 -4.2805 -3.8677 26 1 14.2404 -4.3639 -5.3503 27 1 15.6315 -4.0402 -3.3906 28 1 13.7406 -5.5555 -3.2983 29 7 9.7699 -2.1354 -2.2533 30 6 7.2688 -0.4053 -2.7605 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6886 1.8463 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.9785 2.1765 0.0902 37 1 3.8509 0.5684 0.8427 38 1 3.3239 0.3027 -1.9192 39 1 4.0372 -1.5986 -2.8432 40 1 5.4203 -2.1245 -3.8346 41 1 5.2884 -2.1264 -0.7837 42 1 5.2140 -3.5592 -1.8378 43 1 7.2403 -4.4745 -0.6846 44 1 8.7366 -3.5128 -0.6192 45 1 7.3229 -3.0260 0.3464 46 1 9.1402 0.3070 -0.0709 47 1 11.6126 0.2475 0.1242 48 1 12.8828 -1.3779 -1.2554 49 1 14.5440 -1.4849 -3.5016 50 1 7.5973 -0.8549 -3.6977 51 1 7.7126 0.5850 -2.6578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256066546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:32 Heat of formation + Delta-G solvation = -44.835338 kcal Electronic energy + Delta-G solvation = -31625.445279 eV Core-core repulsion = 27524.654292 eV Total energy + Delta-G solvation = -4100.790986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.33362 -38.89543 -38.17104 -37.00662 -34.60310 -34.05009 -32.88058 -31.95473 -30.66841 -29.89497 -28.58435 -27.06603 -26.55378 -25.55832 -23.84513 -23.16444 -21.95316 -21.46555 -20.98794 -19.98397 -18.97294 -17.50103 -17.01344 -16.55564 -16.51152 -15.98259 -15.47595 -15.37680 -15.01868 -14.72001 -14.66116 -14.29215 -14.15414 -13.80461 -13.61039 -13.46013 -13.18697 -12.77383 -12.65787 -12.51553 -12.11947 -12.05644 -11.90851 -11.71729 -11.60714 -11.51614 -11.40644 -11.31082 -11.24320 -11.14284 -10.61980 -10.49734 -10.45736 -10.17965 -10.13064 -10.10142 -9.84542 -9.34097 -9.15018 -8.92636 -8.27216 -8.02005 -7.61847 -7.04915 -6.79384 -4.42872 2.76290 2.97195 3.01584 3.08660 3.13705 3.22808 3.26067 3.40012 3.93812 4.45366 4.59577 4.61691 4.75995 4.85577 4.92131 4.94199 4.96270 5.02259 5.05237 5.26805 5.28376 5.44746 5.50073 5.66432 5.74236 5.76548 5.79403 5.89031 6.04748 6.09914 6.11879 6.18856 6.27080 6.33113 6.37995 6.40670 6.52328 6.62506 6.73446 6.81424 6.90216 6.94678 7.04088 7.14298 7.21105 7.66030 7.69913 7.83461 7.90136 7.97053 8.34997 8.49683 8.57582 8.74023 9.01062 9.92682 10.18830 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002441 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.544322 B =11466.711835 C =11929.961844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.737 5.737 6 C 0.520 3.480 7 O -0.501 6.501 8 C -0.104 4.104 9 H 0.095 0.905 10 C -0.110 4.110 11 C -0.113 4.113 12 C 0.091 3.909 13 H 0.055 0.945 14 C -0.138 4.138 15 N -0.461 5.461 16 C 0.310 3.690 17 C -0.258 4.258 18 C -0.077 4.077 19 C -0.209 4.209 20 C 0.286 3.714 21 C -0.444 4.444 22 H 0.083 0.917 23 C 0.079 3.921 24 N -0.792 5.792 25 Si 0.913 3.087 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.259 1.259 29 N -0.581 5.581 30 C 0.086 3.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.121 0.879 49 H 0.281 0.719 50 H 0.045 0.955 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.715 4.142 1.928 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.028 4.028 4 C 0.001 3.999 5 N -0.392 5.392 6 C 0.306 3.694 7 O -0.373 6.373 8 C -0.126 4.126 9 H 0.113 0.887 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.017 4.017 13 H 0.073 0.927 14 C -0.196 4.196 15 N -0.183 5.183 16 C 0.078 3.922 17 C -0.282 4.282 18 C -0.101 4.101 19 C -0.231 4.231 20 C 0.158 3.842 21 C -0.477 4.477 22 H 0.101 0.899 23 C -0.140 4.140 24 N -0.418 5.418 25 Si 0.737 3.263 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.183 1.183 29 N -0.300 5.300 30 C -0.042 4.042 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.231 0.769 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.139 0.861 49 H 0.092 0.908 50 H 0.063 0.937 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.392 4.011 2.394 21.896 hybrid contribution 0.701 -0.019 -0.712 0.999 sum -20.691 3.992 1.682 21.140 Atomic orbital electron populations 1.22754 0.80973 1.02930 0.99909 1.87967 1.19698 1.27488 1.95399 1.22831 0.93570 0.85310 1.01075 1.21263 0.91183 0.99167 0.88313 1.45954 1.07950 1.65007 1.20332 1.20440 0.81576 0.78466 0.88953 1.90766 1.52332 1.48525 1.45666 1.21473 0.97701 0.97512 0.95907 0.88725 1.21572 0.99369 0.93813 0.99989 1.21684 0.95774 0.99200 0.98438 1.21413 0.92494 0.88886 0.98915 0.92716 1.21748 1.02590 0.97619 0.97629 1.59871 1.06550 1.10866 1.41027 1.19346 0.87606 0.92766 0.92449 1.20956 0.93915 1.06320 1.07034 1.20997 0.93706 0.97558 0.97875 1.22072 1.00672 1.00649 0.99737 1.18235 0.86274 0.90248 0.89442 1.19253 0.94735 1.05145 1.28616 0.89932 1.25885 0.98440 0.96240 0.93457 1.69820 1.16358 1.20329 1.35322 0.86234 0.78865 0.81942 0.79274 1.19586 1.20043 1.18321 1.68163 1.09522 1.26984 1.25319 1.21759 0.91591 0.98540 0.92307 0.94078 0.94075 0.89520 0.91829 0.92683 0.90249 0.90766 0.76908 0.91739 0.90962 0.91501 0.91661 0.93308 0.91487 0.93016 0.87711 0.88415 0.86080 0.90812 0.93672 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.38 10.65 -35.23 -0.38 -3.75 16 3 C 0.05 0.35 6.07 37.16 0.23 0.57 16 4 C 0.12 1.23 6.06 -4.04 -0.02 1.20 16 5 N -0.74 -7.93 5.38 -60.29 -0.32 -8.26 16 6 C 0.52 7.54 5.87 -10.99 -0.06 7.48 16 7 O -0.50 -9.53 15.24 5.55 0.08 -9.45 16 8 C -0.10 -1.40 3.02 -91.70 -0.28 -1.68 16 9 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 10 C -0.11 -1.31 5.43 -26.61 -0.14 -1.46 16 11 C -0.11 -1.64 5.12 -26.65 -0.14 -1.78 16 12 C 0.09 1.69 2.03 -67.73 -0.14 1.56 16 13 H 0.05 1.12 7.80 -51.93 -0.40 0.71 16 14 C -0.14 -2.64 8.91 37.15 0.33 -2.31 16 15 N -0.46 -9.47 3.32 -165.58 -0.55 -10.02 16 16 C 0.31 7.52 4.27 -155.33 -0.66 6.85 16 17 C -0.26 -6.34 10.04 -38.87 -0.39 -6.73 16 18 C -0.08 -1.89 10.15 -39.40 -0.40 -2.29 16 19 C -0.21 -5.61 8.72 -38.65 -0.34 -5.95 16 20 C 0.29 7.99 6.40 -85.00 -0.54 7.44 16 21 C -0.44 -12.19 9.25 -37.75 -0.35 -12.54 16 22 H 0.08 2.24 7.92 -52.49 -0.42 1.83 16 23 C 0.08 2.01 5.08 -17.34 -0.09 1.92 16 24 N -0.79 -20.66 11.09 55.55 0.62 -20.04 16 25 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 28 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 29 N -0.58 -15.37 8.34 -10.33 -0.09 -15.46 16 30 C 0.09 1.56 4.39 -3.79 -0.02 1.55 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 3.37 7.87 -40.82 -0.32 3.05 16 39 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.06 7.35 -51.93 -0.38 0.67 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.51 6.43 -51.93 -0.33 1.17 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 47 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 48 H 0.12 3.29 6.26 -52.49 -0.33 2.96 16 49 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 50 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.08 1.52 8.05 -51.93 -0.42 1.10 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -32.38 406.23 -9.92 -42.30 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.47 Total: 9.53 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -1.90 Total: -4.87 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.34 Total: -53.78 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.29 Total: -13.20 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.38 -9.92 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256066546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.531 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds