Wall clock time and date at job start Wed Apr 1 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00207 * 2 1 4 4 C 1.53003 * 109.47027 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47185 * 65.00392 * 4 3 2 6 6 C 1.34774 * 120.00294 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99853 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00483 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.50023 * 59.99987 * 8 6 5 10 10 C 1.53117 * 109.50501 * 299.92449 * 8 6 5 11 11 C 1.53118 * 109.15874 * 297.71021 * 10 8 6 12 12 C 1.53036 * 109.28036 * 302.34523 * 11 10 8 13 13 H 1.09000 * 109.46242 * 299.17703 * 12 11 10 14 14 C 1.52994 * 109.46960 * 179.19263 * 12 11 10 15 15 N 1.46849 * 109.52376 * 59.17726 * 12 11 10 16 16 C 1.38816 * 111.00410 * 174.16368 * 15 12 11 17 17 C 1.39803 * 119.58814 * 219.00076 * 16 15 12 18 18 C 1.38591 * 119.49197 * 179.78902 * 17 16 15 19 19 C 1.38390 * 118.68351 * 0.47729 * 18 17 16 20 20 C 1.40566 * 119.14624 * 359.74891 * 19 18 17 21 21 C 1.41311 * 119.78163 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99801 * 154.79208 * 21 20 19 23 23 C 1.40021 * 120.00221 * 334.79511 * 21 20 19 24 24 N 1.30750 * 120.00168 * 340.28558 * 23 21 20 25 25 Si 1.86806 * 120.00142 * 160.28815 * 23 21 20 26 26 H 1.48499 * 109.47292 * 94.78331 * 25 23 21 27 27 H 1.48493 * 109.47120 * 214.78545 * 25 23 21 28 28 H 1.48500 * 109.47025 * 334.78298 * 25 23 21 29 29 N 1.31959 * 119.58637 * 39.27492 * 16 15 12 30 30 C 1.46930 * 111.22082 * 298.26269 * 15 12 11 31 31 H 1.08993 * 109.47102 * 300.00179 * 1 2 3 32 32 H 1.09000 * 109.46847 * 60.00239 * 1 2 3 33 33 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46919 * 59.99695 * 3 2 1 35 35 H 1.08996 * 109.47235 * 299.99760 * 3 2 1 36 36 H 1.09008 * 109.46800 * 184.99868 * 4 3 2 37 37 H 1.09001 * 109.47484 * 304.99674 * 4 3 2 38 38 H 0.97006 * 119.99789 * 359.97438 * 5 4 3 39 39 H 1.09005 * 109.52761 * 57.61139 * 10 8 6 40 40 H 1.08997 * 109.52615 * 177.80570 * 10 8 6 41 41 H 1.09001 * 109.50641 * 62.28745 * 11 10 8 42 42 H 1.09003 * 109.50606 * 182.36733 * 11 10 8 43 43 H 1.09005 * 109.47007 * 59.70376 * 14 12 11 44 44 H 1.08994 * 109.48047 * 179.70395 * 14 12 11 45 45 H 1.08999 * 109.47385 * 299.71431 * 14 12 11 46 46 H 1.08004 * 120.25130 * 359.97438 * 17 16 15 47 47 H 1.08001 * 120.65937 * 180.22933 * 18 17 16 48 48 H 1.07997 * 120.42997 * 179.77187 * 19 18 17 49 49 H 0.96993 * 120.00161 * 180.02562 * 24 23 21 50 50 H 1.09006 * 109.45290 * 301.73244 * 30 15 12 51 51 H 1.09004 * 109.51868 * 181.73777 * 30 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2895 0.3559 -1.4738 7 8 6.1057 0.6829 -0.6384 8 6 5.7434 -0.2830 -2.7609 9 1 5.4279 0.3322 -3.6036 10 6 5.1236 -1.6776 -2.8858 11 6 5.6186 -2.5527 -1.7310 12 6 7.1476 -2.6102 -1.7600 13 1 7.4767 -3.0492 -2.7019 14 6 7.6478 -3.4674 -0.5957 15 7 7.6922 -1.2520 -1.6368 16 6 9.0759 -1.2787 -1.5282 17 6 9.7170 -0.3937 -0.6563 18 6 11.0982 -0.4251 -0.5462 19 6 11.8055 -1.3318 -1.3161 20 6 11.1037 -2.1924 -2.1780 21 6 11.8126 -3.1230 -2.9706 22 1 11.3260 -4.0263 -3.3078 23 6 13.1457 -2.8741 -3.3189 24 7 13.6206 -1.6573 -3.2600 25 14 14.2460 -4.2805 -3.8677 26 1 14.2404 -4.3639 -5.3503 27 1 15.6315 -4.0402 -3.3906 28 1 13.7406 -5.5555 -3.2983 29 7 9.7699 -2.1354 -2.2533 30 6 7.2688 -0.4053 -2.7605 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6886 1.8463 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.9785 2.1765 0.0902 37 1 3.8509 0.5684 0.8427 38 1 3.3239 0.3027 -1.9192 39 1 4.0372 -1.5986 -2.8432 40 1 5.4203 -2.1245 -3.8346 41 1 5.2884 -2.1264 -0.7837 42 1 5.2140 -3.5592 -1.8378 43 1 7.2403 -4.4745 -0.6846 44 1 8.7366 -3.5128 -0.6192 45 1 7.3229 -3.0260 0.3464 46 1 9.1402 0.3070 -0.0709 47 1 11.6126 0.2475 0.1242 48 1 12.8828 -1.3779 -1.2554 49 1 14.5440 -1.4849 -3.5016 50 1 7.5973 -0.8549 -3.6977 51 1 7.7126 0.5850 -2.6578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256066546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:31 Heat of formation + Delta-G solvation = -66.802737 kcal Electronic energy + Delta-G solvation = -31626.397856 eV Core-core repulsion = 27524.654292 eV Total energy + Delta-G solvation = -4101.743564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68199 -40.38221 -39.01847 -38.44441 -35.87580 -35.56978 -34.39920 -33.44447 -32.65927 -30.80083 -30.31161 -28.41121 -27.54624 -27.08601 -25.21701 -24.20000 -23.41340 -22.94455 -22.68240 -21.45481 -20.20495 -19.39854 -17.74137 -17.64770 -17.46300 -17.29197 -17.27029 -16.35327 -16.30013 -16.21011 -15.99409 -15.83122 -15.52397 -15.11333 -14.92382 -14.71050 -14.55600 -14.32185 -13.89039 -13.69174 -13.58170 -13.44952 -13.14643 -13.06056 -12.99502 -12.91298 -12.82875 -12.61703 -12.49679 -12.45648 -12.31925 -12.08600 -11.99255 -11.78355 -11.47845 -11.28596 -11.06657 -10.67404 -10.47686 -10.23702 -9.93614 -9.89186 -9.58074 -8.94875 -8.73083 -6.51082 0.82690 1.00287 1.37521 1.47443 1.55002 1.90679 2.19036 2.33420 2.64339 2.85809 2.90912 3.64917 3.72303 3.82580 3.88696 4.00389 4.08638 4.23129 4.28029 4.30473 4.38047 4.46185 4.48128 4.55783 4.59364 4.63244 4.64911 4.70264 4.75066 4.76083 4.81589 4.86029 4.88018 4.94767 4.97111 5.01385 5.04395 5.09376 5.14542 5.19412 5.23464 5.30073 5.45335 5.61913 5.76266 5.89115 5.92600 6.19931 6.25188 6.38276 6.49781 6.71890 6.75463 7.01239 7.53269 7.89915 8.26733 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002441 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.544322 B =11466.711835 C =11929.961844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.057 3.943 4 C 0.122 3.878 5 N -0.718 5.718 6 C 0.520 3.480 7 O -0.556 6.556 8 C -0.096 4.096 9 H 0.134 0.866 10 C -0.103 4.103 11 C -0.104 4.104 12 C 0.088 3.912 13 H 0.034 0.966 14 C -0.132 4.132 15 N -0.463 5.463 16 C 0.315 3.685 17 C -0.274 4.274 18 C -0.071 4.071 19 C -0.237 4.237 20 C 0.259 3.741 21 C -0.477 4.477 22 H 0.074 0.926 23 C 0.041 3.959 24 N -0.818 5.818 25 Si 0.992 3.008 26 H -0.260 1.260 27 H -0.260 1.260 28 H -0.260 1.260 29 N -0.596 5.596 30 C 0.084 3.916 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.048 0.952 46 H 0.108 0.892 47 H 0.125 0.875 48 H 0.112 0.888 49 H 0.293 0.707 50 H 0.033 0.967 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.287 3.823 0.828 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.020 4.020 4 C -0.001 4.001 5 N -0.372 5.372 6 C 0.306 3.694 7 O -0.432 6.432 8 C -0.118 4.118 9 H 0.151 0.849 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.020 4.020 13 H 0.052 0.948 14 C -0.190 4.190 15 N -0.185 5.185 16 C 0.082 3.918 17 C -0.298 4.298 18 C -0.096 4.096 19 C -0.259 4.259 20 C 0.132 3.868 21 C -0.510 4.510 22 H 0.092 0.908 23 C -0.176 4.176 24 N -0.444 5.444 25 Si 0.811 3.189 26 H -0.185 1.185 27 H -0.184 1.184 28 H -0.184 1.184 29 N -0.315 5.315 30 C -0.043 4.043 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.249 0.751 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.126 0.874 47 H 0.143 0.857 48 H 0.130 0.870 49 H 0.104 0.896 50 H 0.051 0.949 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.031 3.710 1.280 24.349 hybrid contribution 1.399 0.143 -0.334 1.446 sum -22.632 3.853 0.946 22.977 Atomic orbital electron populations 1.22902 0.79421 1.03629 1.01004 1.87916 1.21434 1.28289 1.95660 1.22792 0.91160 0.85206 1.02837 1.21321 0.93486 0.98434 0.86904 1.45779 1.06934 1.63645 1.20873 1.20593 0.82299 0.77889 0.88593 1.90755 1.53986 1.51107 1.47376 1.21465 0.93899 0.99466 0.96960 0.84865 1.21612 1.01497 0.91836 0.99140 1.21630 0.92054 1.01352 0.99173 1.21536 0.95570 0.87443 0.97405 0.94788 1.21696 0.99853 0.99522 0.97925 1.59987 1.04112 1.12302 1.42144 1.19778 0.89436 0.91392 0.91165 1.21130 0.94126 1.06884 1.07631 1.21272 0.93880 0.97048 0.97387 1.21998 1.00278 1.02317 1.01328 1.18627 0.87157 0.90964 0.90071 1.19471 0.96423 1.05135 1.29991 0.90832 1.26809 0.98978 0.99013 0.92832 1.69849 1.17329 1.22235 1.34961 0.85065 0.76889 0.77793 0.79135 1.18472 1.18440 1.18378 1.68241 1.09213 1.27913 1.26169 1.21783 0.95293 0.96594 0.90636 0.93310 0.92637 0.89127 0.90333 0.90573 0.90264 0.93222 0.75083 0.87739 0.89979 0.92599 0.89154 0.90544 0.95670 0.93303 0.87350 0.85735 0.86994 0.89644 0.94901 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.10 10.65 -148.98 -1.59 -7.69 16 3 C 0.06 0.65 6.07 71.98 0.44 1.08 16 4 C 0.12 2.23 6.06 86.38 0.52 2.76 16 5 N -0.72 -13.73 5.38 -463.05 -2.49 -16.22 16 6 C 0.52 14.40 5.87 87.66 0.51 14.91 16 7 O -0.56 -21.43 15.24 -3.05 -0.05 -21.48 16 8 C -0.10 -2.40 3.02 -11.49 -0.03 -2.43 16 9 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 10 C -0.10 -2.12 5.43 30.67 0.17 -1.96 16 11 C -0.10 -2.81 5.12 30.65 0.16 -2.66 16 12 C 0.09 3.31 2.03 44.94 0.09 3.40 16 13 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 14 C -0.13 -5.18 8.91 71.98 0.64 -4.54 16 15 N -0.46 -19.59 3.32 -677.76 -2.25 -21.84 16 16 C 0.31 16.01 4.27 133.42 0.57 16.58 16 17 C -0.27 -14.05 10.04 22.73 0.23 -13.82 16 18 C -0.07 -3.65 10.15 22.39 0.23 -3.43 16 19 C -0.24 -13.37 8.72 22.87 0.20 -13.17 16 20 C 0.26 15.25 6.40 40.18 0.26 15.51 16 21 C -0.48 -27.35 9.25 23.46 0.22 -27.13 16 22 H 0.07 4.19 7.92 -2.91 -0.02 4.17 16 23 C 0.04 2.12 5.08 85.29 0.43 2.55 16 24 N -0.82 -43.53 11.09 21.84 0.24 -43.28 16 25 Si 0.99 38.99 29.60 68.60 2.03 41.02 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 28 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 29 N -0.60 -33.22 8.34 -186.58 -1.56 -34.77 16 30 C 0.08 3.11 4.39 86.31 0.38 3.49 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 5.38 7.87 -92.70 -0.73 4.65 16 39 H 0.10 1.41 7.51 -2.38 -0.02 1.39 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.66 7.35 -2.39 -0.02 1.65 16 42 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.02 1.17 6.43 -2.39 -0.02 1.15 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.11 5.42 8.06 -2.91 -0.02 5.39 16 47 H 0.12 5.53 8.06 -2.91 -0.02 5.51 16 48 H 0.11 6.39 6.26 -2.91 -0.02 6.37 16 49 H 0.29 13.87 8.29 -92.71 -0.77 13.10 16 50 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.05 2.25 8.05 -2.38 -0.02 2.24 16 Total: -1.00 -76.20 406.23 0.79 -75.41 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.19 Total: 36.22 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 6.26 Total: -7.36 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -6.06 Total: -116.12 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.63 Total: -29.17 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -76.20 0.79 -75.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256066546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.607 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds