Wall clock time and date at job start Wed Apr 1 2020 04:55:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53000 * 109.47394 * 2 1
4 4 O 1.42901 * 109.47523 * 179.97438 * 3 2 1
5 5 C 1.35643 * 117.00335 * 179.97438 * 4 3 2
6 6 C 1.39344 * 120.53900 * 0.22224 * 5 4 3
7 7 C 1.38305 * 118.43928 * 180.29001 * 6 5 4
8 8 C 1.38759 * 119.44434 * 359.73057 * 7 6 5
9 9 N 1.31377 * 121.06710 * 0.02562 * 8 7 6
10 10 C 1.32858 * 121.69784 * 359.97438 * 9 8 7
11 11 C 1.47829 * 119.78359 * 179.97438 * 10 9 8
12 12 O 1.21554 * 119.99913 * 220.25254 * 11 10 9
13 13 N 1.34773 * 119.99946 * 40.25210 * 11 10 9
14 14 C 1.46925 * 120.63477 * 356.18344 * 13 11 10
15 15 C 1.53192 * 108.78090 * 126.36428 * 14 13 11
16 16 C 1.53043 * 109.30784 * 54.63323 * 15 14 13
17 17 C 1.53038 * 109.54283 * 298.63644 * 16 15 14
18 18 H 1.09006 * 109.52399 * 301.39938 * 17 16 15
19 19 C 1.52992 * 109.49892 * 181.31724 * 17 16 15
20 20 N 1.46496 * 109.47399 * 175.16271 * 19 17 16
21 21 C 1.36938 * 120.00514 * 180.02562 * 20 19 17
22 22 H 1.08004 * 119.99695 * 359.97438 * 21 20 19
23 23 C 1.38810 * 120.00300 * 180.02562 * 21 20 19
24 24 N 1.31618 * 119.99948 * 359.97438 * 23 21 20
25 25 Si 1.86804 * 120.00090 * 179.97438 * 23 21 20
26 26 H 1.48494 * 109.47074 * 179.97438 * 25 23 21
27 27 H 1.48497 * 109.46771 * 299.99704 * 25 23 21
28 28 H 1.48501 * 109.46949 * 59.99441 * 25 23 21
29 29 C 1.46925 * 120.62811 * 176.15550 * 13 11 10
30 30 H 1.08996 * 109.47880 * 300.00495 * 1 2 3
31 31 H 1.09006 * 109.47136 * 60.00435 * 1 2 3
32 32 H 1.09003 * 109.47445 * 180.02562 * 1 2 3
33 33 H 1.09000 * 109.47205 * 239.99740 * 2 1 3
34 34 H 1.09006 * 109.47136 * 119.99565 * 2 1 3
35 35 H 1.09000 * 109.47156 * 59.99710 * 3 2 1
36 36 H 1.09006 * 109.46624 * 299.99878 * 3 2 1
37 37 H 1.08007 * 120.78094 * 0.02562 * 6 5 4
38 38 H 1.08005 * 120.27609 * 179.75452 * 7 6 5
39 39 H 1.08006 * 119.46949 * 180.02562 * 8 7 6
40 40 H 1.08997 * 109.58521 * 246.16110 * 14 13 11
41 41 H 1.09002 * 109.58337 * 6.43331 * 14 13 11
42 42 H 1.08994 * 109.49986 * 174.58981 * 15 14 13
43 43 H 1.08999 * 109.49817 * 294.65692 * 15 14 13
44 44 H 1.09004 * 109.45675 * 178.61511 * 16 15 14
45 45 H 1.08998 * 109.45515 * 58.66012 * 16 15 14
46 46 H 1.09007 * 109.47385 * 55.16451 * 19 17 16
47 47 H 1.09002 * 109.47542 * 295.16066 * 19 17 16
48 48 H 0.97005 * 120.00183 * 359.97438 * 20 19 17
49 49 H 0.97003 * 119.99871 * 0.02562 * 24 23 21
50 50 H 1.09005 * 109.58725 * 113.84968 * 29 13 11
51 51 H 1.09003 * 109.59092 * 353.41941 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4425 0.0006
5 6 4.0848 2.6511 0.0001
6 6 3.3370 3.8268 0.0038
7 6 4.0096 5.0353 -0.0030
8 6 5.3972 5.0436 -0.0075
9 7 6.0819 3.9223 -0.0059
10 6 5.4810 2.7374 0.0006
11 6 6.2931 1.5022 0.0016
12 8 5.9530 0.5507 -0.6740
13 7 7.4106 1.4311 0.7516
14 6 7.8803 2.5999 1.5079
15 6 8.0661 2.1964 2.9740
16 6 8.9956 0.9830 3.0510
17 6 8.3647 -0.1934 2.3025
18 1 7.3944 -0.4262 2.7414
19 6 9.2793 -1.4153 2.4079
20 7 8.6232 -2.5710 1.7914
21 6 9.2560 -3.7851 1.7668
22 1 10.2390 -3.8906 2.2016
23 6 8.6346 -4.8800 1.1821
24 7 7.4369 -4.7514 0.6518
25 14 9.4982 -6.5361 1.1480
26 1 8.6294 -7.5336 0.4733
27 1 10.7783 -6.4115 0.4057
28 1 9.7733 -6.9797 2.5382
29 6 8.1821 0.1831 0.8288
30 1 -0.3635 0.5139 0.8899
31 1 -0.3634 0.5138 -0.8901
32 1 -0.3634 -1.0277 0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8901
35 1 1.6766 1.9563 0.8900
36 1 1.6766 1.9563 -0.8901
37 1 2.2574 3.7952 0.0074
38 1 3.4595 5.9647 -0.0044
39 1 5.9229 5.9871 -0.0124
40 1 8.8314 2.9414 1.0995
41 1 7.1440 3.4006 1.4376
42 1 8.5052 3.0267 3.5271
43 1 7.0986 1.9422 3.4069
44 1 9.1492 0.7089 4.0948
45 1 9.9545 1.2307 2.5959
46 1 9.4805 -1.6291 3.4577
47 1 10.2178 -1.2124 1.8920
48 1 7.7402 -2.4764 1.4012
49 1 6.9886 -3.8913 0.6692
50 1 9.1580 0.3275 0.3650
51 1 7.6439 -0.6118 0.3126
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001265624413.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:31
Heat of formation + Delta-G solvation = -24.429489 kcal
Electronic energy + Delta-G solvation = -31363.064175 eV
Core-core repulsion = 27263.158053 eV
Total energy + Delta-G solvation = -4099.906122 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.27989 -39.61518 -38.59162 -37.41811 -35.02113 -34.25337 -33.21344 -32.39120
-31.63482 -30.82722 -29.42177 -27.04953 -26.08673 -25.17989 -24.08163 -23.30380
-22.98874 -21.79292 -21.40540 -20.46184 -19.37425 -18.37328 -17.63428 -17.15701
-17.05662 -16.68730 -16.00965 -15.49808 -15.18125 -14.84009 -14.68792 -14.51843
-14.31611 -14.25004 -13.91779 -13.69157 -13.52054 -13.42319 -13.09174 -12.98848
-12.68598 -12.41551 -12.38901 -12.36704 -12.26484 -11.93492 -11.46825 -11.27771
-11.00520 -10.93878 -10.75205 -10.61255 -10.59652 -10.39504 -10.24004 -10.15467
-10.08690 -9.87034 -9.42985 -9.04369 -8.78600 -8.74689 -8.36302 -6.88292
-5.97869 -2.97530 0.47447 0.88039 2.72730 2.74534 3.04196 3.47485
3.58307 3.62906 3.80372 4.03840 4.24277 4.33273 4.54505 4.56576
4.63288 4.74267 4.77424 4.86228 4.90150 5.00196 5.05542 5.08288
5.08865 5.16536 5.27720 5.34011 5.46975 5.52977 5.60169 5.70706
5.73031 5.74045 5.74620 5.82024 5.88438 5.93891 5.95767 6.03029
6.07454 6.11317 6.18194 6.19487 6.43851 6.52595 6.71901 6.79622
6.89943 6.93757 7.43763 7.59394 7.91276 8.33882 8.88165 9.35825
10.22087 10.37285 11.50566
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009427 B = 0.003195 C = 0.002522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2969.397320 B = 8762.303647 C =11098.732592
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.127 4.127
3 C 0.055 3.945
4 O -0.281 6.281
5 C 0.137 3.863
6 C -0.174 4.174
7 C -0.112 4.112
8 C 0.051 3.949
9 N -0.415 5.415
10 C 0.054 3.946
11 C 0.573 3.427
12 O -0.511 6.511
13 N -0.595 5.595
14 C 0.101 3.899
15 C -0.135 4.135
16 C -0.111 4.111
17 C -0.108 4.108
18 H 0.071 0.929
19 C 0.167 3.833
20 N -0.744 5.744
21 C -0.333 4.333
22 H 0.063 0.937
23 C -0.046 4.046
24 N -0.942 5.942
25 Si 1.081 2.919
26 H -0.285 1.285
27 H -0.296 1.296
28 H -0.296 1.296
29 C 0.122 3.878
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.067 0.933
33 H 0.080 0.920
34 H 0.078 0.922
35 H 0.063 0.937
36 H 0.064 0.936
37 H 0.145 0.855
38 H 0.142 0.858
39 H 0.165 0.835
40 H 0.068 0.932
41 H 0.104 0.896
42 H 0.071 0.929
43 H 0.061 0.939
44 H 0.065 0.935
45 H 0.064 0.936
46 H 0.022 0.978
47 H 0.021 0.979
48 H 0.368 0.632
49 H 0.257 0.743
50 H 0.068 0.932
51 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.105 25.311 1.698 27.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.164 4.164
3 C -0.020 4.020
4 O -0.191 6.191
5 C 0.086 3.914
6 C -0.201 4.201
7 C -0.132 4.132
8 C -0.109 4.109
9 N -0.127 5.127
10 C -0.085 4.085
11 C 0.358 3.642
12 O -0.385 6.385
13 N -0.327 5.327
14 C -0.021 4.021
15 C -0.174 4.174
16 C -0.149 4.149
17 C -0.128 4.128
18 H 0.090 0.910
19 C 0.039 3.961
20 N -0.390 5.390
21 C -0.464 4.464
22 H 0.081 0.919
23 C -0.244 4.244
24 N -0.588 5.588
25 Si 0.912 3.088
26 H -0.211 1.211
27 H -0.223 1.223
28 H -0.224 1.224
29 C 0.001 3.999
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.086 0.914
33 H 0.099 0.901
34 H 0.097 0.903
35 H 0.081 0.919
36 H 0.082 0.918
37 H 0.163 0.837
38 H 0.160 0.840
39 H 0.182 0.818
40 H 0.086 0.914
41 H 0.121 0.879
42 H 0.090 0.910
43 H 0.080 0.920
44 H 0.084 0.916
45 H 0.083 0.917
46 H 0.040 0.960
47 H 0.039 0.961
48 H 0.202 0.798
49 H 0.068 0.932
50 H 0.086 0.914
51 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -10.225 22.918 0.919 25.112
hybrid contribution -1.149 2.012 0.503 2.371
sum -11.374 24.930 1.422 27.439
Atomic orbital electron populations
1.21680 0.94150 1.02813 1.01822 1.21500 0.95835 0.94271 1.04816
1.23046 0.77948 0.99865 1.01184 1.86318 1.21511 1.24894 1.86376
1.19942 0.92136 0.85775 0.93540 1.21742 1.01068 0.91790 1.05467
1.22160 0.95749 0.98322 0.96921 1.22758 0.91460 0.96464 1.00219
1.67800 1.39166 0.97241 1.08498 1.20637 0.88725 0.93018 1.06072
1.17617 0.80294 0.85779 0.80477 1.90873 1.69459 1.36972 1.41169
1.47959 1.24806 1.13370 1.46597 1.22088 1.01240 0.88236 0.90578
1.21960 1.00418 0.98530 0.96463 1.21514 0.98508 0.94293 1.00631
1.21709 1.00486 0.95560 0.95012 0.91014 1.20563 0.93806 0.85619
0.96129 1.42425 1.19701 1.06296 1.70611 1.20006 1.01597 0.88398
1.36409 0.91874 1.25766 0.97826 1.02339 0.98439 1.70847 1.13887
1.26598 1.47421 0.83242 0.74456 0.75473 0.75670 1.21072 1.22325
1.22391 1.21724 0.95765 0.85491 0.96930 0.92540 0.92499 0.91427
0.90139 0.90340 0.91927 0.91807 0.83715 0.84024 0.81762 0.91368
0.87878 0.90992 0.91978 0.91649 0.91677 0.96029 0.96127 0.79831
0.93215 0.91378 0.88291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 9.91 37.15 0.37 -0.70 16
2 C -0.13 -1.28 6.30 -26.74 -0.17 -1.44 16
3 C 0.05 0.53 4.76 37.16 0.18 0.71 16
4 O -0.28 -4.06 8.90 -34.65 -0.31 -4.37 16
5 C 0.14 1.79 6.67 -38.56 -0.26 1.54 16
6 C -0.17 -1.54 9.13 -39.15 -0.36 -1.90 16
7 C -0.11 -0.78 10.10 -39.36 -0.40 -1.18 16
8 C 0.05 0.42 11.17 -17.55 -0.20 0.23 16
9 N -0.41 -5.03 7.28 -9.71 -0.07 -5.10 16
10 C 0.05 0.80 6.01 -82.89 -0.50 0.31 16
11 C 0.57 10.47 7.28 -12.34 -0.09 10.38 16
12 O -0.51 -11.39 15.55 -10.70 -0.17 -11.56 16
13 N -0.59 -9.84 2.97 -173.88 -0.52 -10.36 16
14 C 0.10 1.30 6.03 -3.71 -0.02 1.27 16
15 C -0.14 -1.59 6.08 -26.61 -0.16 -1.76 16
16 C -0.11 -1.51 5.17 -26.69 -0.14 -1.65 16
17 C -0.11 -1.91 2.38 -90.50 -0.21 -2.12 16
18 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16
19 C 0.17 3.57 5.65 -4.05 -0.02 3.55 16
20 N -0.74 -20.01 5.37 -59.91 -0.32 -20.34 16
21 C -0.33 -9.91 9.99 -15.06 -0.15 -10.06 16
22 H 0.06 1.84 7.83 -52.48 -0.41 1.42 16
23 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16
24 N -0.94 -30.77 13.70 55.49 0.76 -30.01 16
25 Si 1.08 27.11 29.92 -169.99 -5.09 22.02 16
26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
27 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16
28 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16
29 C 0.12 2.27 5.51 -3.71 -0.02 2.25 16
30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16
35 H 0.06 0.48 7.69 -51.93 -0.40 0.08 16
36 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16
37 H 0.15 0.88 6.46 -52.48 -0.34 0.54 16
38 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16
39 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16
40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.10 1.25 4.57 -51.93 -0.24 1.01 16
42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16
47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
48 H 0.37 10.32 5.72 -40.82 -0.23 10.09 16
49 H 0.26 8.40 6.77 -40.82 -0.28 8.12 16
50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
51 H 0.10 2.22 6.23 -51.93 -0.32 1.89 16
LS Contribution 405.74 15.07 6.11 6.11
Total: -1.00 -37.58 405.74 -10.02 -47.60
By element:
Atomic # 1 Polarization: 16.25 SS G_CDS: -8.18 Total: 8.07 kcal
Atomic # 6 Polarization: 0.17 SS G_CDS: -2.25 Total: -2.07 kcal
Atomic # 7 Polarization: -65.65 SS G_CDS: -0.15 Total: -65.80 kcal
Atomic # 8 Polarization: -15.45 SS G_CDS: -0.47 Total: -15.93 kcal
Atomic # 14 Polarization: 27.11 SS G_CDS: -5.09 Total: 22.02 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -37.58 -10.02 -47.60 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265624413.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.173 kcal
(2) G-P(sol) polarization free energy of solvation -37.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds