Wall clock time and date at job start Wed Apr 1 2020 04:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47394 * 2 1 4 4 O 1.42901 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.35643 * 117.00335 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.53900 * 0.22224 * 5 4 3 7 7 C 1.38305 * 118.43928 * 180.29001 * 6 5 4 8 8 C 1.38759 * 119.44434 * 359.73057 * 7 6 5 9 9 N 1.31377 * 121.06710 * 0.02562 * 8 7 6 10 10 C 1.32858 * 121.69784 * 359.97438 * 9 8 7 11 11 C 1.47829 * 119.78359 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99913 * 220.25254 * 11 10 9 13 13 N 1.34773 * 119.99946 * 40.25210 * 11 10 9 14 14 C 1.46925 * 120.63477 * 356.18344 * 13 11 10 15 15 C 1.53192 * 108.78090 * 126.36428 * 14 13 11 16 16 C 1.53043 * 109.30784 * 54.63323 * 15 14 13 17 17 C 1.53038 * 109.54283 * 298.63644 * 16 15 14 18 18 H 1.09006 * 109.52399 * 301.39938 * 17 16 15 19 19 C 1.52992 * 109.49892 * 181.31724 * 17 16 15 20 20 N 1.46496 * 109.47399 * 175.16271 * 19 17 16 21 21 C 1.36938 * 120.00514 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99695 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00300 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99948 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00090 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47074 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46771 * 299.99704 * 25 23 21 28 28 H 1.48501 * 109.46949 * 59.99441 * 25 23 21 29 29 C 1.46925 * 120.62811 * 176.15550 * 13 11 10 30 30 H 1.08996 * 109.47880 * 300.00495 * 1 2 3 31 31 H 1.09006 * 109.47136 * 60.00435 * 1 2 3 32 32 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47205 * 239.99740 * 2 1 3 34 34 H 1.09006 * 109.47136 * 119.99565 * 2 1 3 35 35 H 1.09000 * 109.47156 * 59.99710 * 3 2 1 36 36 H 1.09006 * 109.46624 * 299.99878 * 3 2 1 37 37 H 1.08007 * 120.78094 * 0.02562 * 6 5 4 38 38 H 1.08005 * 120.27609 * 179.75452 * 7 6 5 39 39 H 1.08006 * 119.46949 * 180.02562 * 8 7 6 40 40 H 1.08997 * 109.58521 * 246.16110 * 14 13 11 41 41 H 1.09002 * 109.58337 * 6.43331 * 14 13 11 42 42 H 1.08994 * 109.49986 * 174.58981 * 15 14 13 43 43 H 1.08999 * 109.49817 * 294.65692 * 15 14 13 44 44 H 1.09004 * 109.45675 * 178.61511 * 16 15 14 45 45 H 1.08998 * 109.45515 * 58.66012 * 16 15 14 46 46 H 1.09007 * 109.47385 * 55.16451 * 19 17 16 47 47 H 1.09002 * 109.47542 * 295.16066 * 19 17 16 48 48 H 0.97005 * 120.00183 * 359.97438 * 20 19 17 49 49 H 0.97003 * 119.99871 * 0.02562 * 24 23 21 50 50 H 1.09005 * 109.58725 * 113.84968 * 29 13 11 51 51 H 1.09003 * 109.59092 * 353.41941 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6511 0.0001 6 6 3.3370 3.8268 0.0038 7 6 4.0096 5.0353 -0.0030 8 6 5.3972 5.0436 -0.0075 9 7 6.0819 3.9223 -0.0059 10 6 5.4810 2.7374 0.0006 11 6 6.2931 1.5022 0.0016 12 8 5.9530 0.5507 -0.6740 13 7 7.4106 1.4311 0.7516 14 6 7.8803 2.5999 1.5079 15 6 8.0661 2.1964 2.9740 16 6 8.9956 0.9830 3.0510 17 6 8.3647 -0.1934 2.3025 18 1 7.3944 -0.4262 2.7414 19 6 9.2793 -1.4153 2.4079 20 7 8.6232 -2.5710 1.7914 21 6 9.2560 -3.7851 1.7668 22 1 10.2390 -3.8906 2.2016 23 6 8.6346 -4.8800 1.1821 24 7 7.4369 -4.7514 0.6518 25 14 9.4982 -6.5361 1.1480 26 1 8.6294 -7.5336 0.4733 27 1 10.7783 -6.4115 0.4057 28 1 9.7733 -6.9797 2.5382 29 6 8.1821 0.1831 0.8288 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8901 37 1 2.2574 3.7952 0.0074 38 1 3.4595 5.9647 -0.0044 39 1 5.9229 5.9871 -0.0124 40 1 8.8314 2.9414 1.0995 41 1 7.1440 3.4006 1.4376 42 1 8.5052 3.0267 3.5271 43 1 7.0986 1.9422 3.4069 44 1 9.1492 0.7089 4.0948 45 1 9.9545 1.2307 2.5959 46 1 9.4805 -1.6291 3.4577 47 1 10.2178 -1.2124 1.8920 48 1 7.7402 -2.4764 1.4012 49 1 6.9886 -3.8913 0.6692 50 1 9.1580 0.3275 0.3650 51 1 7.6439 -0.6118 0.3126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265624413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:31 Heat of formation + Delta-G solvation = -24.429489 kcal Electronic energy + Delta-G solvation = -31363.064175 eV Core-core repulsion = 27263.158053 eV Total energy + Delta-G solvation = -4099.906122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27989 -39.61518 -38.59162 -37.41811 -35.02113 -34.25337 -33.21344 -32.39120 -31.63482 -30.82722 -29.42177 -27.04953 -26.08673 -25.17989 -24.08163 -23.30380 -22.98874 -21.79292 -21.40540 -20.46184 -19.37425 -18.37328 -17.63428 -17.15701 -17.05662 -16.68730 -16.00965 -15.49808 -15.18125 -14.84009 -14.68792 -14.51843 -14.31611 -14.25004 -13.91779 -13.69157 -13.52054 -13.42319 -13.09174 -12.98848 -12.68598 -12.41551 -12.38901 -12.36704 -12.26484 -11.93492 -11.46825 -11.27771 -11.00520 -10.93878 -10.75205 -10.61255 -10.59652 -10.39504 -10.24004 -10.15467 -10.08690 -9.87034 -9.42985 -9.04369 -8.78600 -8.74689 -8.36302 -6.88292 -5.97869 -2.97530 0.47447 0.88039 2.72730 2.74534 3.04196 3.47485 3.58307 3.62906 3.80372 4.03840 4.24277 4.33273 4.54505 4.56576 4.63288 4.74267 4.77424 4.86228 4.90150 5.00196 5.05542 5.08288 5.08865 5.16536 5.27720 5.34011 5.46975 5.52977 5.60169 5.70706 5.73031 5.74045 5.74620 5.82024 5.88438 5.93891 5.95767 6.03029 6.07454 6.11317 6.18194 6.19487 6.43851 6.52595 6.71901 6.79622 6.89943 6.93757 7.43763 7.59394 7.91276 8.33882 8.88165 9.35825 10.22087 10.37285 11.50566 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.003195 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.397320 B = 8762.303647 C =11098.732592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.055 3.945 4 O -0.281 6.281 5 C 0.137 3.863 6 C -0.174 4.174 7 C -0.112 4.112 8 C 0.051 3.949 9 N -0.415 5.415 10 C 0.054 3.946 11 C 0.573 3.427 12 O -0.511 6.511 13 N -0.595 5.595 14 C 0.101 3.899 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.108 4.108 18 H 0.071 0.929 19 C 0.167 3.833 20 N -0.744 5.744 21 C -0.333 4.333 22 H 0.063 0.937 23 C -0.046 4.046 24 N -0.942 5.942 25 Si 1.081 2.919 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.296 1.296 29 C 0.122 3.878 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.022 0.978 47 H 0.021 0.979 48 H 0.368 0.632 49 H 0.257 0.743 50 H 0.068 0.932 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 25.311 1.698 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.020 4.020 4 O -0.191 6.191 5 C 0.086 3.914 6 C -0.201 4.201 7 C -0.132 4.132 8 C -0.109 4.109 9 N -0.127 5.127 10 C -0.085 4.085 11 C 0.358 3.642 12 O -0.385 6.385 13 N -0.327 5.327 14 C -0.021 4.021 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.128 4.128 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.390 5.390 21 C -0.464 4.464 22 H 0.081 0.919 23 C -0.244 4.244 24 N -0.588 5.588 25 Si 0.912 3.088 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.224 1.224 29 C 0.001 3.999 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.202 0.798 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.225 22.918 0.919 25.112 hybrid contribution -1.149 2.012 0.503 2.371 sum -11.374 24.930 1.422 27.439 Atomic orbital electron populations 1.21680 0.94150 1.02813 1.01822 1.21500 0.95835 0.94271 1.04816 1.23046 0.77948 0.99865 1.01184 1.86318 1.21511 1.24894 1.86376 1.19942 0.92136 0.85775 0.93540 1.21742 1.01068 0.91790 1.05467 1.22160 0.95749 0.98322 0.96921 1.22758 0.91460 0.96464 1.00219 1.67800 1.39166 0.97241 1.08498 1.20637 0.88725 0.93018 1.06072 1.17617 0.80294 0.85779 0.80477 1.90873 1.69459 1.36972 1.41169 1.47959 1.24806 1.13370 1.46597 1.22088 1.01240 0.88236 0.90578 1.21960 1.00418 0.98530 0.96463 1.21514 0.98508 0.94293 1.00631 1.21709 1.00486 0.95560 0.95012 0.91014 1.20563 0.93806 0.85619 0.96129 1.42425 1.19701 1.06296 1.70611 1.20006 1.01597 0.88398 1.36409 0.91874 1.25766 0.97826 1.02339 0.98439 1.70847 1.13887 1.26598 1.47421 0.83242 0.74456 0.75473 0.75670 1.21072 1.22325 1.22391 1.21724 0.95765 0.85491 0.96930 0.92540 0.92499 0.91427 0.90139 0.90340 0.91927 0.91807 0.83715 0.84024 0.81762 0.91368 0.87878 0.90992 0.91978 0.91649 0.91677 0.96029 0.96127 0.79831 0.93215 0.91378 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.15 0.37 -0.70 16 2 C -0.13 -1.28 6.30 -26.74 -0.17 -1.44 16 3 C 0.05 0.53 4.76 37.16 0.18 0.71 16 4 O -0.28 -4.06 8.90 -34.65 -0.31 -4.37 16 5 C 0.14 1.79 6.67 -38.56 -0.26 1.54 16 6 C -0.17 -1.54 9.13 -39.15 -0.36 -1.90 16 7 C -0.11 -0.78 10.10 -39.36 -0.40 -1.18 16 8 C 0.05 0.42 11.17 -17.55 -0.20 0.23 16 9 N -0.41 -5.03 7.28 -9.71 -0.07 -5.10 16 10 C 0.05 0.80 6.01 -82.89 -0.50 0.31 16 11 C 0.57 10.47 7.28 -12.34 -0.09 10.38 16 12 O -0.51 -11.39 15.55 -10.70 -0.17 -11.56 16 13 N -0.59 -9.84 2.97 -173.88 -0.52 -10.36 16 14 C 0.10 1.30 6.03 -3.71 -0.02 1.27 16 15 C -0.14 -1.59 6.08 -26.61 -0.16 -1.76 16 16 C -0.11 -1.51 5.17 -26.69 -0.14 -1.65 16 17 C -0.11 -1.91 2.38 -90.50 -0.21 -2.12 16 18 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 19 C 0.17 3.57 5.65 -4.05 -0.02 3.55 16 20 N -0.74 -20.01 5.37 -59.91 -0.32 -20.34 16 21 C -0.33 -9.91 9.99 -15.06 -0.15 -10.06 16 22 H 0.06 1.84 7.83 -52.48 -0.41 1.42 16 23 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16 24 N -0.94 -30.77 13.70 55.49 0.76 -30.01 16 25 Si 1.08 27.11 29.92 -169.99 -5.09 22.02 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 29 C 0.12 2.27 5.51 -3.71 -0.02 2.25 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.48 7.69 -51.93 -0.40 0.08 16 36 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 37 H 0.15 0.88 6.46 -52.48 -0.34 0.54 16 38 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 39 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.25 4.57 -51.93 -0.24 1.01 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.37 10.32 5.72 -40.82 -0.23 10.09 16 49 H 0.26 8.40 6.77 -40.82 -0.28 8.12 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.10 2.22 6.23 -51.93 -0.32 1.89 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -37.58 405.74 -10.02 -47.60 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.18 Total: 8.07 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.25 Total: -2.07 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.15 Total: -65.80 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.47 Total: -15.93 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -5.09 Total: 22.02 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.58 -10.02 -47.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265624413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.173 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds