Wall clock time and date at job start Wed Apr 1 2020 04:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47394 * 2 1 4 4 O 1.42901 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.35643 * 117.00335 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.53900 * 0.22224 * 5 4 3 7 7 C 1.38305 * 118.43928 * 180.29001 * 6 5 4 8 8 C 1.38759 * 119.44434 * 359.73057 * 7 6 5 9 9 N 1.31377 * 121.06710 * 0.02562 * 8 7 6 10 10 C 1.32858 * 121.69784 * 359.97438 * 9 8 7 11 11 C 1.47829 * 119.78359 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99913 * 220.25254 * 11 10 9 13 13 N 1.34773 * 119.99946 * 40.25210 * 11 10 9 14 14 C 1.46925 * 120.63477 * 356.18344 * 13 11 10 15 15 C 1.53192 * 108.78090 * 126.36428 * 14 13 11 16 16 C 1.53043 * 109.30784 * 54.63323 * 15 14 13 17 17 C 1.53038 * 109.54283 * 298.63644 * 16 15 14 18 18 H 1.09006 * 109.52399 * 301.39938 * 17 16 15 19 19 C 1.52992 * 109.49892 * 181.31724 * 17 16 15 20 20 N 1.46496 * 109.47399 * 175.16271 * 19 17 16 21 21 C 1.36938 * 120.00514 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99695 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00300 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99948 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00090 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47074 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46771 * 299.99704 * 25 23 21 28 28 H 1.48501 * 109.46949 * 59.99441 * 25 23 21 29 29 C 1.46925 * 120.62811 * 176.15550 * 13 11 10 30 30 H 1.08996 * 109.47880 * 300.00495 * 1 2 3 31 31 H 1.09006 * 109.47136 * 60.00435 * 1 2 3 32 32 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47205 * 239.99740 * 2 1 3 34 34 H 1.09006 * 109.47136 * 119.99565 * 2 1 3 35 35 H 1.09000 * 109.47156 * 59.99710 * 3 2 1 36 36 H 1.09006 * 109.46624 * 299.99878 * 3 2 1 37 37 H 1.08007 * 120.78094 * 0.02562 * 6 5 4 38 38 H 1.08005 * 120.27609 * 179.75452 * 7 6 5 39 39 H 1.08006 * 119.46949 * 180.02562 * 8 7 6 40 40 H 1.08997 * 109.58521 * 246.16110 * 14 13 11 41 41 H 1.09002 * 109.58337 * 6.43331 * 14 13 11 42 42 H 1.08994 * 109.49986 * 174.58981 * 15 14 13 43 43 H 1.08999 * 109.49817 * 294.65692 * 15 14 13 44 44 H 1.09004 * 109.45675 * 178.61511 * 16 15 14 45 45 H 1.08998 * 109.45515 * 58.66012 * 16 15 14 46 46 H 1.09007 * 109.47385 * 55.16451 * 19 17 16 47 47 H 1.09002 * 109.47542 * 295.16066 * 19 17 16 48 48 H 0.97005 * 120.00183 * 359.97438 * 20 19 17 49 49 H 0.97003 * 119.99871 * 0.02562 * 24 23 21 50 50 H 1.09005 * 109.58725 * 113.84968 * 29 13 11 51 51 H 1.09003 * 109.59092 * 353.41941 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6511 0.0001 6 6 3.3370 3.8268 0.0038 7 6 4.0096 5.0353 -0.0030 8 6 5.3972 5.0436 -0.0075 9 7 6.0819 3.9223 -0.0059 10 6 5.4810 2.7374 0.0006 11 6 6.2931 1.5022 0.0016 12 8 5.9530 0.5507 -0.6740 13 7 7.4106 1.4311 0.7516 14 6 7.8803 2.5999 1.5079 15 6 8.0661 2.1964 2.9740 16 6 8.9956 0.9830 3.0510 17 6 8.3647 -0.1934 2.3025 18 1 7.3944 -0.4262 2.7414 19 6 9.2793 -1.4153 2.4079 20 7 8.6232 -2.5710 1.7914 21 6 9.2560 -3.7851 1.7668 22 1 10.2390 -3.8906 2.2016 23 6 8.6346 -4.8800 1.1821 24 7 7.4369 -4.7514 0.6518 25 14 9.4982 -6.5361 1.1480 26 1 8.6294 -7.5336 0.4733 27 1 10.7783 -6.4115 0.4057 28 1 9.7733 -6.9797 2.5382 29 6 8.1821 0.1831 0.8288 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8901 37 1 2.2574 3.7952 0.0074 38 1 3.4595 5.9647 -0.0044 39 1 5.9229 5.9871 -0.0124 40 1 8.8314 2.9414 1.0995 41 1 7.1440 3.4006 1.4376 42 1 8.5052 3.0267 3.5271 43 1 7.0986 1.9422 3.4069 44 1 9.1492 0.7089 4.0948 45 1 9.9545 1.2307 2.5959 46 1 9.4805 -1.6291 3.4577 47 1 10.2178 -1.2124 1.8920 48 1 7.7402 -2.4764 1.4012 49 1 6.9886 -3.8913 0.6692 50 1 9.1580 0.3275 0.3650 51 1 7.6439 -0.6118 0.3126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265624413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:30 Heat of formation + Delta-G solvation = -49.513104 kcal Electronic energy + Delta-G solvation = -31364.151882 eV Core-core repulsion = 27263.158053 eV Total energy + Delta-G solvation = -4100.993829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21332 -40.81401 -39.45443 -38.85622 -36.89565 -35.02642 -34.72102 -33.37346 -33.10785 -31.74348 -31.18697 -27.77937 -27.37333 -26.82191 -25.06083 -25.01524 -24.04248 -22.87637 -22.55524 -21.75177 -20.60367 -19.37234 -19.20777 -18.68333 -18.02703 -17.56998 -17.21047 -16.77772 -16.50466 -16.17286 -15.90588 -15.75716 -15.50724 -15.41079 -15.25708 -15.11014 -14.70754 -14.44154 -14.25834 -14.17016 -14.01316 -13.82531 -13.61361 -13.14384 -13.06255 -12.98628 -12.71477 -12.62429 -12.52235 -12.16069 -12.03808 -11.94112 -11.93708 -11.79362 -11.69336 -11.60179 -11.41574 -11.20419 -10.97128 -10.84323 -10.41282 -9.80160 -9.52019 -9.15925 -8.43947 -5.37833 -0.34019 0.16323 1.54475 1.54508 1.66740 1.81388 1.82900 1.97878 2.63490 2.69932 3.07745 3.37140 3.51832 3.55745 3.63271 3.76544 3.81645 3.82509 3.87267 3.92500 4.00094 4.03429 4.09081 4.16717 4.22553 4.33377 4.42459 4.43928 4.45302 4.57455 4.63615 4.68006 4.72439 4.82238 4.86579 4.88319 4.92171 4.98803 5.02229 5.06628 5.07604 5.11880 5.21628 5.24380 5.38067 5.41132 5.50837 5.54178 6.14802 6.29755 6.41632 6.68489 7.03176 7.03912 7.93773 8.07800 9.06861 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.003195 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.397320 B = 8762.303647 C =11098.732592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.051 3.949 4 O -0.326 6.326 5 C 0.115 3.885 6 C -0.168 4.168 7 C -0.085 4.085 8 C 0.056 3.944 9 N -0.431 5.431 10 C 0.013 3.987 11 C 0.561 3.439 12 O -0.576 6.576 13 N -0.594 5.594 14 C 0.098 3.902 15 C -0.127 4.127 16 C -0.104 4.104 17 C -0.093 4.093 18 H 0.048 0.952 19 C 0.165 3.835 20 N -0.761 5.761 21 C -0.337 4.337 22 H 0.072 0.928 23 C -0.110 4.110 24 N -0.974 5.974 25 Si 1.134 2.866 26 H -0.293 1.293 27 H -0.275 1.275 28 H -0.273 1.273 29 C 0.129 3.871 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.177 0.823 38 H 0.193 0.807 39 H 0.206 0.794 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.029 0.971 47 H 0.027 0.973 48 H 0.356 0.644 49 H 0.238 0.762 50 H 0.071 0.929 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 29.684 3.181 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C -0.023 4.023 4 O -0.238 6.238 5 C 0.065 3.935 6 C -0.194 4.194 7 C -0.105 4.105 8 C -0.106 4.106 9 N -0.144 5.144 10 C -0.122 4.122 11 C 0.349 3.651 12 O -0.454 6.454 13 N -0.325 5.325 14 C -0.023 4.023 15 C -0.165 4.165 16 C -0.142 4.142 17 C -0.113 4.113 18 H 0.066 0.934 19 C 0.039 3.961 20 N -0.405 5.405 21 C -0.468 4.468 22 H 0.090 0.910 23 C -0.301 4.301 24 N -0.622 5.622 25 Si 0.957 3.043 26 H -0.219 1.219 27 H -0.201 1.201 28 H -0.199 1.199 29 C 0.006 3.994 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.194 0.806 38 H 0.211 0.789 39 H 0.223 0.777 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.047 0.953 47 H 0.045 0.955 48 H 0.187 0.813 49 H 0.048 0.952 50 H 0.090 0.910 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.191 27.354 2.460 29.294 hybrid contribution -1.162 0.857 0.041 1.444 sum -11.352 28.210 2.502 30.512 Atomic orbital electron populations 1.21638 0.91388 1.03180 1.03389 1.21537 0.98184 0.94778 1.02351 1.23269 0.76189 0.99532 1.03350 1.86277 1.23794 1.26751 1.86940 1.20228 0.91961 0.86765 0.94566 1.22156 1.02476 0.90691 1.04045 1.22755 0.95377 0.99386 0.92958 1.23584 0.92678 0.96421 0.97872 1.67691 1.39991 0.97254 1.09434 1.20080 0.89048 0.92390 1.10720 1.18412 0.80467 0.86750 0.79439 1.90813 1.71045 1.39730 1.43834 1.48089 1.24334 1.13513 1.46600 1.22393 1.02139 0.87000 0.90768 1.21944 0.99708 0.98836 0.95967 1.21508 0.99149 0.92922 1.00644 1.21552 0.98914 0.96047 0.94804 0.93364 1.20763 0.94334 0.85330 0.95704 1.42715 1.19449 1.07356 1.70999 1.20446 1.01796 0.89463 1.35106 0.91011 1.27446 0.97784 1.06603 0.98235 1.70987 1.15557 1.25621 1.50021 0.82587 0.73920 0.70821 0.76970 1.21939 1.20103 1.19865 1.21404 0.95272 0.85612 0.97072 0.90826 0.90935 0.91744 0.92836 0.92713 0.89313 0.89659 0.80617 0.78946 0.77723 0.89915 0.86563 0.86883 0.93039 0.90255 0.90140 0.95331 0.95521 0.81261 0.95192 0.91033 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.13 -2.91 6.30 30.59 0.19 -2.72 16 3 C 0.05 1.00 4.76 71.98 0.34 1.35 16 4 O -0.33 -10.19 8.90 -74.25 -0.66 -10.85 16 5 C 0.12 3.06 6.67 22.93 0.15 3.21 16 6 C -0.17 -2.43 9.13 22.55 0.21 -2.23 16 7 C -0.09 -0.75 10.10 22.41 0.23 -0.52 16 8 C 0.06 0.70 11.17 84.89 0.95 1.65 16 9 N -0.43 -9.80 7.28 -184.63 -1.34 -11.15 16 10 C 0.01 0.40 6.01 41.93 0.25 0.65 16 11 C 0.56 22.47 7.28 86.78 0.63 23.10 16 12 O -0.58 -29.07 15.55 11.43 0.18 -28.90 16 13 N -0.59 -20.95 2.97 -822.32 -2.44 -23.39 16 14 C 0.10 2.41 6.03 86.36 0.52 2.93 16 15 C -0.13 -2.71 6.08 30.67 0.19 -2.52 16 16 C -0.10 -2.68 5.17 30.62 0.16 -2.52 16 17 C -0.09 -3.46 2.38 -10.72 -0.03 -3.48 16 18 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 19 C 0.17 7.29 5.65 86.38 0.49 7.78 16 20 N -0.76 -43.20 5.37 -343.46 -1.85 -45.05 16 21 C -0.34 -20.63 9.99 84.03 0.84 -19.79 16 22 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 23 C -0.11 -6.94 5.50 84.86 0.47 -6.47 16 24 N -0.97 -67.00 13.70 21.65 0.30 -66.70 16 25 Si 1.13 55.44 29.92 68.60 2.05 57.49 16 26 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 29 C 0.13 5.21 5.51 86.36 0.48 5.69 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.23 7.69 -2.39 -0.02 1.21 16 36 H 0.09 1.26 7.71 -2.38 -0.02 1.24 16 37 H 0.18 1.35 6.46 -2.91 -0.02 1.34 16 38 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 39 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.12 2.63 4.57 -2.39 -0.01 2.62 16 42 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.36 21.77 5.72 -92.70 -0.53 21.24 16 49 H 0.24 16.82 6.77 -92.71 -0.63 16.19 16 50 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 51 H 0.05 2.38 6.23 -2.39 -0.01 2.36 16 Total: -1.00 -92.80 405.74 3.55 -89.25 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.54 Total: 34.44 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.78 Total: 4.85 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -5.34 Total: -146.29 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.48 Total: -39.74 kcal Atomic # 14 Polarization: 55.44 SS G_CDS: 2.05 Total: 57.49 kcal Total: -92.80 3.55 -89.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265624413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.737 kcal (2) G-P(sol) polarization free energy of solvation -92.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds