Wall clock time and date at job start Wed Apr 1 2020 04:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47250 * 2 1 4 4 O 1.42905 * 109.46769 * 119.99563 * 2 1 3 5 5 C 1.35718 * 117.00332 * 147.92467 * 4 2 1 6 6 C 1.39236 * 120.38000 * 5.43769 * 5 4 2 7 7 C 1.38311 * 118.44627 * 180.02562 * 6 5 4 8 8 C 1.39472 * 119.13641 * 0.02562 * 7 6 5 9 9 C 1.47922 * 119.66231 * 179.97438 * 8 7 6 10 10 O 1.21547 * 119.99808 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00193 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99958 * 179.72194 * 11 9 8 13 13 C 1.53006 * 109.46976 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46881 * 180.02562 * 13 12 11 15 15 N 1.46499 * 109.46835 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00497 * 269.99877 * 15 14 13 17 17 H 1.07997 * 120.00263 * 139.97173 * 16 15 14 18 18 C 1.38807 * 119.99968 * 319.98136 * 16 15 14 19 19 N 1.31619 * 120.00079 * 341.04180 * 18 16 15 20 20 Si 1.86801 * 120.00115 * 161.04338 * 18 16 15 21 21 H 1.48494 * 109.47085 * 89.99953 * 20 18 16 22 22 H 1.48501 * 109.47135 * 209.99735 * 20 18 16 23 23 H 1.48501 * 109.47258 * 329.99603 * 20 18 16 24 24 C 1.46500 * 119.99677 * 90.00195 * 15 14 13 25 25 C 1.53001 * 117.49762 * 192.61349 * 24 15 14 26 26 C 1.53003 * 60.00339 * 252.50969 * 25 24 15 27 27 N 1.32800 * 120.67847 * 0.27020 * 8 7 6 28 28 C 1.31380 * 121.69614 * 359.43896 * 27 8 7 29 29 H 1.08998 * 109.47265 * 300.00672 * 1 2 3 30 30 H 1.09002 * 109.46292 * 60.00406 * 1 2 3 31 31 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47265 * 239.99328 * 2 1 3 33 33 H 1.08998 * 109.47535 * 59.99494 * 3 2 1 34 34 H 1.08996 * 109.46812 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46577 * 299.99493 * 3 2 1 36 36 H 1.08007 * 120.77210 * 359.97438 * 6 5 4 37 37 H 1.08006 * 120.43553 * 180.02562 * 7 6 5 38 38 H 0.96998 * 119.99715 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47360 * 300.00192 * 12 11 9 40 40 H 1.09003 * 109.47229 * 60.00421 * 12 11 9 41 41 H 1.08999 * 109.46970 * 300.00109 * 13 12 11 42 42 H 1.08996 * 109.47014 * 60.00399 * 13 12 11 43 43 H 1.08999 * 109.47304 * 299.99778 * 14 13 12 44 44 H 1.09003 * 109.47380 * 60.00065 * 14 13 12 45 45 H 0.97001 * 120.00032 * 185.03934 * 19 18 16 46 46 H 1.08993 * 115.55367 * 338.32170 * 24 15 14 47 47 H 1.09000 * 117.49791 * 359.97438 * 25 24 15 48 48 H 1.09000 * 117.49747 * 145.02190 * 25 24 15 49 49 H 1.08994 * 117.50300 * 252.51185 * 26 25 24 50 50 H 1.09003 * 117.51598 * 107.47673 * 26 25 24 51 51 H 1.07999 * 119.59441 * 180.28744 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1777 -1.3495 1.0533 6 6 3.9212 -1.2774 -0.1218 7 6 5.1088 -1.9826 -0.1943 8 6 5.5185 -2.7375 0.9046 9 6 6.7863 -3.4968 0.8394 10 8 7.4649 -3.4611 -0.1683 11 7 7.1890 -4.2281 1.8974 12 6 8.4416 -4.9849 1.8307 13 6 8.6629 -5.7225 3.1528 14 6 9.9714 -6.5123 3.0833 15 7 10.1836 -7.2181 4.3494 16 6 10.8715 -6.6100 5.3654 17 1 10.5400 -6.7253 6.3867 18 6 11.9948 -5.8453 5.0825 19 7 12.6193 -5.9930 3.9334 20 14 12.6204 -4.6064 6.3328 21 1 13.6008 -5.2641 7.2335 22 1 13.2776 -3.4780 5.6255 23 1 11.4803 -4.0920 7.1333 24 6 9.6598 -8.5745 4.5286 25 6 9.6485 -9.1455 5.9480 26 6 10.6539 -9.6696 4.9207 27 7 4.7791 -2.7864 2.0066 28 6 3.6492 -2.1241 2.1098 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8900 36 1 3.5780 -0.6852 -0.9573 37 1 5.7111 -1.9492 -1.0902 38 1 6.6472 -4.2569 2.7015 39 1 8.3865 -5.7076 1.0166 40 1 9.2708 -4.3001 1.6531 41 1 8.7178 -5.0000 3.9671 42 1 7.8337 -6.4073 3.3300 43 1 9.9169 -7.2348 2.2689 44 1 10.8005 -5.8271 2.9063 45 1 13.4451 -5.5128 3.7648 46 1 8.8395 -8.8528 3.8672 47 1 10.0310 -8.5122 6.7484 48 1 8.8203 -9.7997 6.2206 49 1 10.4873 -10.6684 4.5174 50 1 11.6976 -9.3808 5.0449 51 1 3.0771 -2.1845 3.0238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266176707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:40 Heat of formation + Delta-G solvation = 2.543331 kcal Electronic energy + Delta-G solvation = -29355.081454 eV Core-core repulsion = 25256.344961 eV Total energy + Delta-G solvation = -4098.736493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23031 -39.69619 -38.37504 -37.06614 -35.25945 -33.92212 -33.51219 -32.64552 -31.63723 -30.66575 -29.20308 -27.88663 -25.71714 -24.80030 -24.07011 -23.13308 -21.90908 -21.35474 -20.90621 -20.44620 -19.65566 -18.94579 -17.84523 -17.24283 -16.31751 -16.07223 -15.64581 -15.54507 -15.27611 -15.14777 -14.90652 -14.59639 -14.52301 -14.18747 -14.01613 -13.76237 -13.48066 -13.30617 -12.97712 -12.87004 -12.70333 -12.55214 -12.44766 -12.14027 -11.87602 -11.56773 -11.43874 -11.33554 -10.96145 -10.78341 -10.71339 -10.65592 -10.35227 -10.21112 -10.15186 -10.04900 -9.74617 -9.61802 -9.51008 -9.22455 -8.93634 -8.66803 -8.46688 -6.40003 -5.81796 -3.40910 0.45729 0.81788 2.51172 2.69671 3.26241 3.34487 3.42301 3.44760 3.67994 4.01197 4.06310 4.22595 4.27100 4.38421 4.43686 4.51311 4.73998 4.77231 4.95847 5.01685 5.09806 5.12641 5.16612 5.21385 5.35404 5.41151 5.47318 5.55025 5.60237 5.62814 5.70513 5.81238 5.94545 5.97442 6.07013 6.19487 6.32937 6.43434 6.44878 6.54902 6.70344 6.73593 6.74620 6.81420 7.08345 7.15444 7.30045 7.39446 7.66224 7.76831 7.84539 8.32408 8.54540 9.18126 9.78916 10.38054 11.19007 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.001817 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.148842 B =15408.203047 C =15818.211234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.178 4.178 4 O -0.299 6.299 5 C 0.103 3.897 6 C -0.180 4.180 7 C -0.068 4.068 8 C 0.040 3.960 9 C 0.568 3.432 10 O -0.541 6.541 11 N -0.704 5.704 12 C 0.119 3.881 13 C -0.146 4.146 14 C 0.154 3.846 15 N -0.549 5.549 16 C -0.264 4.264 17 H 0.062 0.938 18 C 0.018 3.982 19 N -0.886 5.886 20 Si 0.897 3.103 21 H -0.285 1.285 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.124 3.876 25 C -0.204 4.204 26 C -0.220 4.220 27 N -0.417 5.417 28 C 0.075 3.925 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.409 0.591 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.097 0.903 45 H 0.257 0.743 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.830 11.801 -9.311 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.235 4.235 4 O -0.211 6.211 5 C 0.054 3.946 6 C -0.206 4.206 7 C -0.088 4.088 8 C -0.098 4.098 9 C 0.353 3.647 10 O -0.419 6.419 11 N -0.354 5.354 12 C -0.004 4.004 13 C -0.187 4.187 14 C 0.028 3.972 15 N -0.265 5.265 16 C -0.394 4.394 17 H 0.080 0.920 18 C -0.183 4.183 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.202 1.202 24 C 0.015 3.985 25 C -0.243 4.243 26 C -0.261 4.261 27 N -0.129 5.129 28 C -0.087 4.087 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.111 0.889 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.991 11.491 -9.295 27.332 hybrid contribution -0.062 1.164 0.194 1.182 sum -23.053 12.655 -9.101 27.828 Atomic orbital electron populations 1.21902 0.92160 1.03407 1.03347 1.22615 0.95746 0.92912 0.87235 1.22335 1.02191 0.95500 1.03512 1.86128 1.34498 1.62889 1.37612 1.20445 0.86605 0.92337 0.95226 1.21716 0.96516 1.03890 0.98431 1.21961 0.94855 0.92688 0.99345 1.21163 0.96674 1.00682 0.91233 1.17732 0.83903 0.79382 0.83730 1.90786 1.55337 1.64391 1.31367 1.46024 1.24886 1.47407 1.17047 1.21537 0.84551 0.94730 0.99589 1.22478 1.01654 0.99718 0.94814 1.20799 0.94623 0.95227 0.86580 1.43330 1.61033 1.08580 1.13582 1.18950 1.05826 1.26012 0.88590 0.92000 1.25314 0.95637 1.00618 0.96742 1.69891 1.16275 1.42805 1.23800 0.86386 0.78772 0.81274 0.80929 1.21199 1.21401 1.20174 1.21201 0.96513 0.85793 0.95013 1.23064 1.01519 1.04348 0.95359 1.23295 0.98093 0.98550 1.06181 1.67616 1.04118 1.16977 1.24160 1.22258 0.93515 0.94681 0.98233 0.91205 0.90322 0.91498 0.90435 0.91117 0.91834 0.90663 0.83568 0.83064 0.75488 0.91727 0.91220 0.91444 0.92994 0.95285 0.88526 0.93278 0.89406 0.88760 0.90986 0.91360 0.88943 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.56 37.16 0.36 -0.22 16 2 C 0.07 0.37 2.82 -26.73 -0.08 0.30 16 3 C -0.18 -0.80 9.42 37.16 0.35 -0.45 16 4 O -0.30 -2.37 9.78 -18.86 -0.18 -2.56 16 5 C 0.10 0.93 6.70 -38.84 -0.26 0.67 16 6 C -0.18 -1.53 8.75 -39.18 -0.34 -1.88 16 7 C -0.07 -0.74 9.62 -39.10 -0.38 -1.11 16 8 C 0.04 0.53 6.74 -83.02 -0.56 -0.03 16 9 C 0.57 9.07 7.80 -12.30 -0.10 8.97 16 10 O -0.54 -10.06 16.31 5.32 0.09 -9.98 16 11 N -0.70 -10.93 5.54 -61.22 -0.34 -11.27 16 12 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 13 C -0.15 -2.73 5.65 -26.73 -0.15 -2.88 16 14 C 0.15 3.47 5.33 -4.04 -0.02 3.45 16 15 N -0.55 -13.33 2.76 -165.66 -0.46 -13.79 16 16 C -0.26 -7.00 8.54 -15.06 -0.13 -7.13 16 17 H 0.06 1.66 6.49 -52.49 -0.34 1.32 16 18 C 0.02 0.48 4.99 -17.43 -0.09 0.40 16 19 N -0.89 -25.04 11.49 55.49 0.64 -24.40 16 20 Si 0.90 21.35 29.60 -169.99 -5.03 16.32 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 2.67 6.60 -67.92 -0.45 2.22 16 25 C -0.20 -4.07 9.85 -26.73 -0.26 -4.33 16 26 C -0.22 -4.60 10.20 -26.72 -0.27 -4.87 16 27 N -0.42 -5.16 9.53 -9.68 -0.09 -5.25 16 28 C 0.08 0.76 11.14 -17.38 -0.19 0.56 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.34 5.88 -51.93 -0.31 0.04 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 7.80 -51.93 -0.41 -0.07 16 35 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.15 0.84 5.90 -52.48 -0.31 0.53 16 37 H 0.15 1.55 7.63 -52.48 -0.40 1.15 16 38 H 0.41 5.82 7.79 -40.82 -0.32 5.50 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.62 8.07 -51.93 -0.42 0.21 16 44 H 0.10 2.48 5.60 -51.93 -0.29 2.19 16 45 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 46 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 47 H 0.09 2.03 6.39 -51.93 -0.33 1.70 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 51 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 419.52 15.07 6.32 6.32 Total: -1.00 -31.09 419.52 -9.83 -40.92 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.18 Total: 7.98 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.59 Total: -4.30 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.25 Total: -54.70 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.10 Total: -12.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.09 -9.83 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266176707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.460 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds