Wall clock time and date at job start Wed Apr 1 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47250 * 2 1 4 4 O 1.42905 * 109.46769 * 119.99563 * 2 1 3 5 5 C 1.35718 * 117.00332 * 147.92467 * 4 2 1 6 6 C 1.39236 * 120.38000 * 5.43769 * 5 4 2 7 7 C 1.38311 * 118.44627 * 180.02562 * 6 5 4 8 8 C 1.39472 * 119.13641 * 0.02562 * 7 6 5 9 9 C 1.47922 * 119.66231 * 179.97438 * 8 7 6 10 10 O 1.21547 * 119.99808 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00193 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99958 * 179.72194 * 11 9 8 13 13 C 1.53006 * 109.46976 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46881 * 180.02562 * 13 12 11 15 15 N 1.46499 * 109.46835 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00497 * 269.99877 * 15 14 13 17 17 H 1.07997 * 120.00263 * 139.97173 * 16 15 14 18 18 C 1.38807 * 119.99968 * 319.98136 * 16 15 14 19 19 N 1.31619 * 120.00079 * 341.04180 * 18 16 15 20 20 Si 1.86801 * 120.00115 * 161.04338 * 18 16 15 21 21 H 1.48494 * 109.47085 * 89.99953 * 20 18 16 22 22 H 1.48501 * 109.47135 * 209.99735 * 20 18 16 23 23 H 1.48501 * 109.47258 * 329.99603 * 20 18 16 24 24 C 1.46500 * 119.99677 * 90.00195 * 15 14 13 25 25 C 1.53001 * 117.49762 * 192.61349 * 24 15 14 26 26 C 1.53003 * 60.00339 * 252.50969 * 25 24 15 27 27 N 1.32800 * 120.67847 * 0.27020 * 8 7 6 28 28 C 1.31380 * 121.69614 * 359.43896 * 27 8 7 29 29 H 1.08998 * 109.47265 * 300.00672 * 1 2 3 30 30 H 1.09002 * 109.46292 * 60.00406 * 1 2 3 31 31 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47265 * 239.99328 * 2 1 3 33 33 H 1.08998 * 109.47535 * 59.99494 * 3 2 1 34 34 H 1.08996 * 109.46812 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46577 * 299.99493 * 3 2 1 36 36 H 1.08007 * 120.77210 * 359.97438 * 6 5 4 37 37 H 1.08006 * 120.43553 * 180.02562 * 7 6 5 38 38 H 0.96998 * 119.99715 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47360 * 300.00192 * 12 11 9 40 40 H 1.09003 * 109.47229 * 60.00421 * 12 11 9 41 41 H 1.08999 * 109.46970 * 300.00109 * 13 12 11 42 42 H 1.08996 * 109.47014 * 60.00399 * 13 12 11 43 43 H 1.08999 * 109.47304 * 299.99778 * 14 13 12 44 44 H 1.09003 * 109.47380 * 60.00065 * 14 13 12 45 45 H 0.97001 * 120.00032 * 185.03934 * 19 18 16 46 46 H 1.08993 * 115.55367 * 338.32170 * 24 15 14 47 47 H 1.09000 * 117.49791 * 359.97438 * 25 24 15 48 48 H 1.09000 * 117.49747 * 145.02190 * 25 24 15 49 49 H 1.08994 * 117.50300 * 252.51185 * 26 25 24 50 50 H 1.09003 * 117.51598 * 107.47673 * 26 25 24 51 51 H 1.07999 * 119.59441 * 180.28744 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1777 -1.3495 1.0533 6 6 3.9212 -1.2774 -0.1218 7 6 5.1088 -1.9826 -0.1943 8 6 5.5185 -2.7375 0.9046 9 6 6.7863 -3.4968 0.8394 10 8 7.4649 -3.4611 -0.1683 11 7 7.1890 -4.2281 1.8974 12 6 8.4416 -4.9849 1.8307 13 6 8.6629 -5.7225 3.1528 14 6 9.9714 -6.5123 3.0833 15 7 10.1836 -7.2181 4.3494 16 6 10.8715 -6.6100 5.3654 17 1 10.5400 -6.7253 6.3867 18 6 11.9948 -5.8453 5.0825 19 7 12.6193 -5.9930 3.9334 20 14 12.6204 -4.6064 6.3328 21 1 13.6008 -5.2641 7.2335 22 1 13.2776 -3.4780 5.6255 23 1 11.4803 -4.0920 7.1333 24 6 9.6598 -8.5745 4.5286 25 6 9.6485 -9.1455 5.9480 26 6 10.6539 -9.6696 4.9207 27 7 4.7791 -2.7864 2.0066 28 6 3.6492 -2.1241 2.1098 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8900 36 1 3.5780 -0.6852 -0.9573 37 1 5.7111 -1.9492 -1.0902 38 1 6.6472 -4.2569 2.7015 39 1 8.3865 -5.7076 1.0166 40 1 9.2708 -4.3001 1.6531 41 1 8.7178 -5.0000 3.9671 42 1 7.8337 -6.4073 3.3300 43 1 9.9169 -7.2348 2.2689 44 1 10.8005 -5.8271 2.9063 45 1 13.4451 -5.5128 3.7648 46 1 8.8395 -8.8528 3.8672 47 1 10.0310 -8.5122 6.7484 48 1 8.8203 -9.7997 6.2206 49 1 10.4873 -10.6684 4.5174 50 1 11.6976 -9.3808 5.0449 51 1 3.0771 -2.1845 3.0238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266176707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:39 Heat of formation + Delta-G solvation = -15.759062 kcal Electronic energy + Delta-G solvation = -29355.875105 eV Core-core repulsion = 25256.344961 eV Total energy + Delta-G solvation = -4099.530144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.02073 -40.70175 -39.27905 -38.80306 -36.71071 -35.24389 -34.37502 -33.59366 -33.22011 -31.76200 -30.72928 -28.19572 -27.31646 -25.96926 -25.19210 -24.35610 -23.00890 -22.61162 -22.45656 -21.60854 -21.32810 -19.63117 -18.84686 -18.30397 -17.98911 -17.28437 -16.84126 -16.67884 -16.50895 -16.44072 -16.01665 -15.77465 -15.66490 -15.31149 -15.06186 -14.94241 -14.43977 -14.31671 -14.13979 -13.90698 -13.63424 -13.52248 -13.37106 -13.15846 -13.14285 -12.87490 -12.77310 -12.60195 -12.46584 -12.30770 -12.02645 -11.99894 -11.84665 -11.74950 -11.48845 -11.38500 -11.26590 -10.98053 -10.88838 -10.72576 -10.48181 -10.18406 -9.53662 -8.36468 -7.83355 -5.46973 -0.41684 0.06501 1.42424 1.46133 1.54318 1.62636 1.91760 2.10409 2.47455 2.73854 3.10724 3.17407 3.44846 3.45839 3.52956 3.66373 3.74510 3.89583 3.95702 3.98447 4.13608 4.18080 4.26565 4.35385 4.49580 4.58370 4.61774 4.61977 4.68966 4.72538 4.77300 4.77354 4.83858 4.86499 4.89683 4.95058 4.97528 5.08433 5.12732 5.21003 5.24595 5.28289 5.38971 5.39660 5.48156 5.58477 5.70860 5.85146 6.12261 6.38102 6.50678 6.71280 7.10372 7.18231 7.86616 8.38955 9.12609 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.001817 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.148842 B =15408.203047 C =15818.211234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 C -0.177 4.177 4 O -0.304 6.304 5 C 0.115 3.885 6 C -0.171 4.171 7 C -0.068 4.068 8 C 0.012 3.988 9 C 0.567 3.433 10 O -0.575 6.575 11 N -0.700 5.700 12 C 0.132 3.868 13 C -0.123 4.123 14 C 0.155 3.845 15 N -0.566 5.566 16 C -0.263 4.263 17 H 0.058 0.942 18 C -0.032 4.032 19 N -0.917 5.917 20 Si 0.954 3.046 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.270 1.270 24 C 0.104 3.896 25 C -0.186 4.186 26 C -0.221 4.221 27 N -0.432 5.432 28 C 0.068 3.932 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.252 0.748 46 H 0.116 0.884 47 H 0.073 0.927 48 H 0.110 0.890 49 H 0.099 0.901 50 H 0.053 0.947 51 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.990 12.393 -9.425 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 C -0.234 4.234 4 O -0.216 6.216 5 C 0.066 3.934 6 C -0.196 4.196 7 C -0.089 4.089 8 C -0.125 4.125 9 C 0.353 3.647 10 O -0.456 6.456 11 N -0.350 5.350 12 C 0.008 3.992 13 C -0.163 4.163 14 C 0.028 3.972 15 N -0.283 5.283 16 C -0.393 4.393 17 H 0.075 0.925 18 C -0.229 4.229 19 N -0.560 5.560 20 Si 0.781 3.219 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.194 1.194 24 C -0.004 4.004 25 C -0.225 4.225 26 C -0.262 4.262 27 N -0.144 5.144 28 C -0.095 4.095 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.254 0.746 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.133 0.867 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.117 0.883 50 H 0.072 0.928 51 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -26.186 12.075 -9.389 30.325 hybrid contribution 0.751 1.002 0.218 1.272 sum -25.434 13.077 -9.171 30.034 Atomic orbital electron populations 1.21933 0.91029 1.03463 1.04226 1.22945 0.96655 0.93167 0.86645 1.22343 1.01674 0.95080 1.04311 1.86150 1.33669 1.62543 1.39258 1.20470 0.86767 0.91334 0.94859 1.21967 0.95261 1.03190 0.99199 1.22037 0.95685 0.92470 0.98682 1.20805 0.96303 1.02512 0.92840 1.18164 0.84614 0.78948 0.82968 1.90753 1.56704 1.65608 1.32492 1.45891 1.24259 1.47321 1.17540 1.21235 0.84887 0.94367 0.98740 1.22122 1.00114 0.99137 0.94905 1.20692 0.95203 0.94981 0.86294 1.43519 1.61288 1.10106 1.13401 1.19105 1.05486 1.25706 0.89027 0.92493 1.25945 0.96224 1.02399 0.98366 1.70027 1.16616 1.43961 1.25404 0.85499 0.78254 0.79112 0.78986 1.21077 1.21888 1.19432 1.21535 0.97399 0.84581 0.96920 1.23061 1.01863 1.03760 0.93779 1.23219 0.95994 0.99841 1.07108 1.67521 1.04961 1.17874 1.24014 1.22614 0.92987 0.94474 0.99417 0.91510 0.88301 0.91853 0.89236 0.91616 0.92598 0.88662 0.80518 0.82878 0.74642 0.91469 0.93184 0.92970 0.91258 0.94800 0.91941 0.93851 0.86688 0.90851 0.87206 0.88264 0.92786 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.56 71.98 0.69 -0.05 16 2 C 0.06 0.46 2.82 30.60 0.09 0.55 16 3 C -0.18 -1.11 9.42 71.98 0.68 -0.43 16 4 O -0.30 -4.07 9.78 -90.39 -0.88 -4.96 16 5 C 0.12 1.84 6.70 22.75 0.15 1.99 16 6 C -0.17 -2.53 8.75 22.53 0.20 -2.34 16 7 C -0.07 -1.42 9.62 22.58 0.22 -1.20 16 8 C 0.01 0.31 6.74 41.86 0.28 0.59 16 9 C 0.57 18.43 7.80 86.81 0.68 19.11 16 10 O -0.58 -22.01 16.31 -3.86 -0.06 -22.07 16 11 N -0.70 -22.00 5.54 -465.89 -2.58 -24.58 16 12 C 0.13 4.61 5.67 86.38 0.49 5.10 16 13 C -0.12 -4.59 5.65 30.60 0.17 -4.42 16 14 C 0.15 7.10 5.33 86.38 0.46 7.56 16 15 N -0.57 -27.65 2.76 -678.03 -1.87 -29.52 16 16 C -0.26 -14.15 8.54 84.03 0.72 -13.43 16 17 H 0.06 3.08 6.49 -2.91 -0.02 3.06 16 18 C -0.03 -1.75 4.99 84.86 0.42 -1.33 16 19 N -0.92 -53.62 11.49 21.65 0.25 -53.37 16 20 Si 0.95 44.88 29.60 68.60 2.03 46.91 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.10 4.33 6.60 44.99 0.30 4.63 16 25 C -0.19 -7.05 9.85 30.60 0.30 -6.75 16 26 C -0.22 -8.98 10.20 30.60 0.31 -8.66 16 27 N -0.43 -10.38 9.53 -184.53 -1.76 -12.14 16 28 C 0.07 1.27 11.14 85.00 0.95 2.21 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.48 5.88 -2.39 -0.01 0.46 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.45 7.80 -2.39 -0.02 0.43 16 35 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.18 1.44 5.90 -2.91 -0.02 1.43 16 37 H 0.15 3.08 7.63 -2.91 -0.02 3.06 16 38 H 0.42 11.81 7.79 -92.71 -0.72 11.09 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 44 H 0.06 3.34 5.60 -2.39 -0.01 3.33 16 45 H 0.25 14.36 8.32 -92.71 -0.77 13.59 16 46 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 47 H 0.07 3.10 6.39 -2.39 -0.02 3.09 16 48 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 50 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.14 419.52 2.43 -66.71 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.21 Total: 29.90 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 7.10 Total: 3.13 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -5.97 Total: -119.62 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.95 Total: -27.03 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.14 2.43 -66.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266176707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.951 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds