Wall clock time and date at job start Wed Apr 1 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 O 1.42902 * 109.47342 * 120.00019 * 2 1 3 5 5 C 1.35645 * 116.99587 * 85.05387 * 4 2 1 6 6 C 1.39342 * 120.54673 * 354.45852 * 5 4 2 7 7 C 1.38300 * 118.44247 * 179.74069 * 6 5 4 8 8 C 1.38765 * 119.44654 * 0.55214 * 7 6 5 9 9 N 1.31370 * 121.06455 * 359.70647 * 8 7 6 10 10 C 1.32864 * 121.69972 * 359.97438 * 9 8 7 11 11 C 1.47824 * 119.78725 * 179.97438 * 10 9 8 12 12 O 1.21552 * 120.00065 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99977 * 0.02738 * 11 10 9 14 14 C 1.46503 * 120.00034 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46987 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47062 * 180.02562 * 15 14 13 17 17 H 1.09002 * 110.63713 * 305.70080 * 16 15 14 18 18 C 1.55150 * 110.71897 * 182.55965 * 16 15 14 19 19 C 1.54912 * 101.58031 * 206.13508 * 18 16 15 20 20 N 1.47425 * 104.83394 * 37.01035 * 19 18 16 21 21 C 1.36937 * 125.65040 * 155.90630 * 20 19 18 22 22 H 1.07999 * 119.99880 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00122 * 359.97438 * 21 20 19 24 24 N 1.31628 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00238 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46641 * 59.99741 * 25 23 21 27 27 H 1.48500 * 109.47035 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46955 * 300.00064 * 25 23 21 29 29 C 1.47327 * 108.73316 * 335.71574 * 20 19 18 30 30 H 1.09001 * 109.47413 * 59.99532 * 1 2 3 31 31 H 1.09003 * 109.46810 * 300.00088 * 1 2 3 32 32 H 1.08996 * 109.47317 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47236 * 240.00232 * 2 1 3 34 34 H 1.09003 * 109.47253 * 60.00183 * 3 2 1 35 35 H 1.09004 * 109.47483 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47261 * 300.00561 * 3 2 1 37 37 H 1.08004 * 120.77663 * 359.97438 * 6 5 4 38 38 H 1.08002 * 120.27608 * 180.26648 * 7 6 5 39 39 H 1.07998 * 119.46577 * 179.68435 * 8 7 6 40 40 H 0.96997 * 119.99547 * 359.97438 * 13 11 10 41 41 H 1.09005 * 109.46757 * 299.99681 * 14 13 11 42 42 H 1.09000 * 109.46703 * 59.99745 * 14 13 11 43 43 H 1.09004 * 109.46669 * 300.00096 * 15 14 13 44 44 H 1.08997 * 109.47143 * 60.00145 * 15 14 13 45 45 H 1.08999 * 111.00791 * 324.20514 * 18 16 15 46 46 H 1.08996 * 111.00773 * 88.02365 * 18 16 15 47 47 H 1.09003 * 110.36533 * 155.84608 * 19 18 16 48 48 H 1.09000 * 110.36499 * 278.05664 * 19 18 16 49 49 H 0.96993 * 119.99834 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.06045 * 241.87121 * 29 20 19 51 51 H 1.08999 * 109.84894 * 120.61441 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1134 -2.0241 1.0975 6 6 1.6615 -2.7136 -0.0259 7 6 1.7970 -4.0897 -0.0528 8 6 2.3631 -4.7408 1.0341 9 7 2.7774 -4.0706 2.0853 10 6 2.6744 -2.7478 2.1550 11 6 3.1540 -2.0364 3.3588 12 8 3.0612 -0.8263 3.4269 13 7 3.6940 -2.7295 4.3809 14 6 4.1698 -2.0243 5.5737 15 6 4.7329 -3.0362 6.5736 16 6 5.2292 -2.2999 7.8196 17 1 5.9392 -1.5190 7.5471 18 6 5.8656 -3.2933 8.8272 19 6 5.6582 -2.5496 10.1702 20 7 4.3408 -1.9002 10.0425 21 6 3.5284 -1.5322 11.0816 22 1 2.5777 -1.0600 10.8826 23 6 3.9267 -1.7660 12.3906 24 7 5.0852 -2.3420 12.6330 25 14 2.8187 -1.2634 13.8080 26 1 1.5192 -1.9732 13.6961 27 1 3.4683 -1.6206 15.0948 28 1 2.5877 0.2027 13.7598 29 6 4.0445 -1.7083 8.6122 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.2194 -2.1854 -0.8577 38 1 1.4608 -4.6533 -0.9105 39 1 2.4644 -5.8159 1.0156 40 1 3.7677 -3.6951 4.3266 41 1 4.9517 -1.3194 5.2912 42 1 3.3410 -1.4838 6.0308 43 1 3.9512 -3.7415 6.8559 44 1 5.5617 -3.5764 6.1161 45 1 5.3370 -4.2466 8.8229 46 1 6.9259 -3.4359 8.6186 47 1 5.6534 -3.2576 10.9990 48 1 6.4388 -1.8027 10.3147 49 1 5.3633 -2.5058 13.5477 50 1 3.9438 -0.6459 8.3905 51 1 3.1252 -2.2324 8.3511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267567045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:19 Heat of formation + Delta-G solvation = -19.046415 kcal Electronic energy + Delta-G solvation = -29988.959796 eV Core-core repulsion = 25889.287101 eV Total energy + Delta-G solvation = -4099.672695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31840 -39.32226 -38.72866 -37.67105 -35.09320 -33.71518 -33.14466 -32.61757 -30.94279 -30.37791 -28.87419 -27.75356 -26.64623 -25.18743 -24.54792 -23.86528 -22.18666 -21.63241 -20.79181 -19.99684 -19.37251 -18.75296 -17.89147 -17.28987 -16.78146 -16.11659 -15.66621 -15.57314 -15.47438 -15.05182 -14.83048 -14.66171 -14.50765 -14.02288 -13.82447 -13.53377 -13.43183 -13.22802 -12.91538 -12.73473 -12.65312 -12.43476 -12.33285 -12.16229 -11.80426 -11.59630 -11.49742 -11.45553 -11.24016 -10.97770 -10.83208 -10.67952 -10.41098 -10.23616 -10.10118 -10.01263 -9.88126 -9.73083 -9.65165 -9.37174 -9.00057 -8.73866 -8.56579 -6.73467 -5.56896 -2.97918 0.32003 0.81254 2.64042 2.67369 3.09852 3.46116 3.49698 3.51414 3.59556 3.93525 4.11657 4.26544 4.31887 4.43812 4.56219 4.56666 4.60385 4.71591 5.03047 5.08048 5.09760 5.21591 5.22495 5.27262 5.36388 5.40248 5.48123 5.50854 5.56280 5.68380 5.69727 5.75119 5.77390 5.89030 5.95841 6.00703 6.12790 6.31188 6.34295 6.48630 6.56006 6.70094 6.74179 6.87213 6.87527 7.08585 7.31400 7.61678 7.65057 7.71312 7.94591 8.26969 8.45520 9.31221 9.92147 10.58217 11.46977 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.001904 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.202311 B =14702.785805 C =15551.427563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 C -0.147 4.147 4 O -0.264 6.264 5 C 0.143 3.857 6 C -0.180 4.180 7 C -0.108 4.108 8 C 0.056 3.944 9 N -0.420 5.420 10 C 0.043 3.957 11 C 0.567 3.433 12 O -0.515 6.515 13 N -0.712 5.712 14 C 0.118 3.882 15 C -0.116 4.116 16 C -0.097 4.097 17 H 0.072 0.928 18 C -0.138 4.138 19 C 0.151 3.849 20 N -0.606 5.606 21 C -0.219 4.219 22 H 0.076 0.924 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.139 3.861 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.408 0.592 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.010 0.990 49 H 0.251 0.749 50 H 0.020 0.980 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -3.010 -32.687 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 C -0.205 4.205 4 O -0.175 6.175 5 C 0.092 3.908 6 C -0.206 4.206 7 C -0.128 4.128 8 C -0.105 4.105 9 N -0.132 5.132 10 C -0.096 4.096 11 C 0.351 3.649 12 O -0.390 6.390 13 N -0.364 5.364 14 C -0.005 4.005 15 C -0.154 4.154 16 C -0.117 4.117 17 H 0.090 0.910 18 C -0.177 4.177 19 C 0.027 3.973 20 N -0.332 5.332 21 C -0.348 4.348 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.745 3.255 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.013 3.987 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.183 0.817 40 H 0.243 0.757 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.123 0.877 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.038 0.962 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.335 -2.347 -31.478 32.013 hybrid contribution -1.052 0.130 -0.375 1.124 sum -6.387 -2.217 -31.852 32.562 Atomic orbital electron populations 1.22404 0.94740 1.02994 1.03709 1.22625 0.94611 0.94454 0.87077 1.21829 1.02400 0.92954 1.03271 1.86494 1.78883 1.14359 1.37722 1.20027 0.92560 0.84657 0.93591 1.21810 1.04481 0.95588 0.98729 1.22214 0.96753 0.94125 0.99723 1.22702 0.97910 1.00693 0.89174 1.67611 1.13461 1.06164 1.25915 1.20763 1.04092 0.89340 0.95381 1.17593 0.78530 0.86623 0.82114 1.90850 1.55294 1.12810 1.80009 1.45883 1.61658 1.11531 1.17306 1.21532 0.99536 0.95308 0.84107 1.21788 1.00703 0.97817 0.95111 1.22088 0.98144 0.98022 0.93398 0.90996 1.23035 0.98590 0.98103 0.97984 1.21911 0.85858 0.95530 0.94035 1.44596 1.18749 1.70381 0.99468 1.19057 0.98757 1.32252 0.84714 0.90626 1.24783 0.97368 1.01571 0.97196 1.69802 1.20566 1.48440 1.18514 0.86152 0.79530 0.78167 0.81672 1.21226 1.21621 1.21266 1.21433 0.94704 0.96845 0.85735 0.90734 0.90878 0.92078 0.91044 0.90907 0.91435 0.90495 0.83557 0.83972 0.81732 0.75683 0.91435 0.90883 0.91121 0.91578 0.92191 0.92519 0.87726 0.97213 0.93797 0.96194 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.19 37.16 0.34 -0.77 16 2 C 0.07 0.52 2.85 -26.73 -0.08 0.44 16 3 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 4 O -0.26 -3.15 7.86 -40.59 -0.32 -3.47 16 5 C 0.14 1.58 6.62 -38.55 -0.26 1.33 16 6 C -0.18 -1.32 8.34 -39.15 -0.33 -1.65 16 7 C -0.11 -0.64 10.10 -39.36 -0.40 -1.04 16 8 C 0.06 0.42 11.17 -17.55 -0.20 0.22 16 9 N -0.42 -4.50 9.54 -9.71 -0.09 -4.59 16 10 C 0.04 0.55 6.76 -82.88 -0.56 -0.01 16 11 C 0.57 8.53 7.80 -12.34 -0.10 8.44 16 12 O -0.52 -9.32 15.14 -16.63 -0.25 -9.57 16 13 N -0.71 -9.55 5.55 -61.25 -0.34 -9.89 16 14 C 0.12 1.69 5.54 -4.04 -0.02 1.67 16 15 C -0.12 -1.63 4.72 -26.73 -0.13 -1.76 16 16 C -0.10 -1.72 2.95 -88.79 -0.26 -1.98 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.14 -2.67 6.54 -24.59 -0.16 -2.83 16 19 C 0.15 3.81 5.89 -2.53 -0.01 3.79 16 20 N -0.61 -16.22 3.40 -169.83 -0.58 -16.80 16 21 C -0.22 -6.36 10.28 -15.06 -0.15 -6.52 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 24 N -0.92 -27.70 10.09 55.49 0.56 -27.14 16 25 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 C 0.14 3.03 6.13 -2.90 -0.02 3.01 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.37 6.94 -51.93 -0.36 0.01 16 33 H 0.07 0.40 6.35 -51.93 -0.33 0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.15 0.70 5.60 -52.48 -0.29 0.41 16 38 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.41 4.74 7.80 -40.82 -0.32 4.42 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.17 7.58 -51.93 -0.39 0.78 16 43 H 0.07 1.01 8.00 -51.93 -0.42 0.60 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.11 2.94 5.87 -51.93 -0.31 2.63 16 48 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 408.10 15.07 6.15 6.15 Total: -1.00 -35.26 408.10 -10.24 -45.49 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.28 Total: 0.92 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.07 Total: 1.17 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.45 Total: -58.42 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.57 Total: -13.04 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.26 -10.24 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.447 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds