Wall clock time and date at job start Wed Apr 1 2020 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 O 1.42902 * 109.47342 * 120.00019 * 2 1 3 5 5 C 1.35645 * 116.99587 * 85.05387 * 4 2 1 6 6 C 1.39342 * 120.54673 * 354.45852 * 5 4 2 7 7 C 1.38300 * 118.44247 * 179.74069 * 6 5 4 8 8 C 1.38765 * 119.44654 * 0.55214 * 7 6 5 9 9 N 1.31370 * 121.06455 * 359.70647 * 8 7 6 10 10 C 1.32864 * 121.69972 * 359.97438 * 9 8 7 11 11 C 1.47824 * 119.78725 * 179.97438 * 10 9 8 12 12 O 1.21552 * 120.00065 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99977 * 0.02738 * 11 10 9 14 14 C 1.46503 * 120.00034 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46987 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47062 * 180.02562 * 15 14 13 17 17 H 1.09002 * 110.63713 * 305.70080 * 16 15 14 18 18 C 1.55150 * 110.71897 * 182.55965 * 16 15 14 19 19 C 1.54912 * 101.58031 * 206.13508 * 18 16 15 20 20 N 1.47425 * 104.83394 * 37.01035 * 19 18 16 21 21 C 1.36937 * 125.65040 * 155.90630 * 20 19 18 22 22 H 1.07999 * 119.99880 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00122 * 359.97438 * 21 20 19 24 24 N 1.31628 * 119.99828 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00238 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46641 * 59.99741 * 25 23 21 27 27 H 1.48500 * 109.47035 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46955 * 300.00064 * 25 23 21 29 29 C 1.47327 * 108.73316 * 335.71574 * 20 19 18 30 30 H 1.09001 * 109.47413 * 59.99532 * 1 2 3 31 31 H 1.09003 * 109.46810 * 300.00088 * 1 2 3 32 32 H 1.08996 * 109.47317 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47236 * 240.00232 * 2 1 3 34 34 H 1.09003 * 109.47253 * 60.00183 * 3 2 1 35 35 H 1.09004 * 109.47483 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47261 * 300.00561 * 3 2 1 37 37 H 1.08004 * 120.77663 * 359.97438 * 6 5 4 38 38 H 1.08002 * 120.27608 * 180.26648 * 7 6 5 39 39 H 1.07998 * 119.46577 * 179.68435 * 8 7 6 40 40 H 0.96997 * 119.99547 * 359.97438 * 13 11 10 41 41 H 1.09005 * 109.46757 * 299.99681 * 14 13 11 42 42 H 1.09000 * 109.46703 * 59.99745 * 14 13 11 43 43 H 1.09004 * 109.46669 * 300.00096 * 15 14 13 44 44 H 1.08997 * 109.47143 * 60.00145 * 15 14 13 45 45 H 1.08999 * 111.00791 * 324.20514 * 18 16 15 46 46 H 1.08996 * 111.00773 * 88.02365 * 18 16 15 47 47 H 1.09003 * 110.36533 * 155.84608 * 19 18 16 48 48 H 1.09000 * 110.36499 * 278.05664 * 19 18 16 49 49 H 0.96993 * 119.99834 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.06045 * 241.87121 * 29 20 19 51 51 H 1.08999 * 109.84894 * 120.61441 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1134 -2.0241 1.0975 6 6 1.6615 -2.7136 -0.0259 7 6 1.7970 -4.0897 -0.0528 8 6 2.3631 -4.7408 1.0341 9 7 2.7774 -4.0706 2.0853 10 6 2.6744 -2.7478 2.1550 11 6 3.1540 -2.0364 3.3588 12 8 3.0612 -0.8263 3.4269 13 7 3.6940 -2.7295 4.3809 14 6 4.1698 -2.0243 5.5737 15 6 4.7329 -3.0362 6.5736 16 6 5.2292 -2.2999 7.8196 17 1 5.9392 -1.5190 7.5471 18 6 5.8656 -3.2933 8.8272 19 6 5.6582 -2.5496 10.1702 20 7 4.3408 -1.9002 10.0425 21 6 3.5284 -1.5322 11.0816 22 1 2.5777 -1.0600 10.8826 23 6 3.9267 -1.7660 12.3906 24 7 5.0852 -2.3420 12.6330 25 14 2.8187 -1.2634 13.8080 26 1 1.5192 -1.9732 13.6961 27 1 3.4683 -1.6206 15.0948 28 1 2.5877 0.2027 13.7598 29 6 4.0445 -1.7083 8.6122 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.2194 -2.1854 -0.8577 38 1 1.4608 -4.6533 -0.9105 39 1 2.4644 -5.8159 1.0156 40 1 3.7677 -3.6951 4.3266 41 1 4.9517 -1.3194 5.2912 42 1 3.3410 -1.4838 6.0308 43 1 3.9512 -3.7415 6.8559 44 1 5.5617 -3.5764 6.1161 45 1 5.3370 -4.2466 8.8229 46 1 6.9259 -3.4359 8.6186 47 1 5.6534 -3.2576 10.9990 48 1 6.4388 -1.8027 10.3147 49 1 5.3633 -2.5058 13.5477 50 1 3.9438 -0.6459 8.3905 51 1 3.1252 -2.2324 8.3511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267567045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:18 Heat of formation + Delta-G solvation = -41.800358 kcal Electronic energy + Delta-G solvation = -29989.946481 eV Core-core repulsion = 25889.287101 eV Total energy + Delta-G solvation = -4100.659380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02731 -40.33884 -39.50283 -39.28218 -36.45263 -34.78137 -34.28185 -33.50527 -32.39200 -31.34889 -30.60079 -28.30316 -28.18410 -26.72861 -25.59263 -24.72753 -23.49162 -22.32809 -21.96288 -21.65730 -20.81947 -19.50448 -18.89261 -18.74241 -17.97275 -17.13314 -16.85671 -16.61943 -16.56312 -16.20864 -16.08891 -15.60848 -15.45894 -15.32515 -14.99321 -14.69850 -14.35124 -14.27248 -13.92737 -13.78025 -13.50987 -13.45678 -13.33965 -13.32150 -13.16815 -13.10071 -12.84218 -12.82095 -12.67376 -12.24817 -12.03337 -12.02026 -11.79763 -11.77342 -11.59195 -11.44424 -11.30327 -11.18366 -10.81039 -10.73995 -10.59939 -10.11691 -9.47701 -8.88060 -7.77308 -5.21839 -0.36454 0.22085 1.44404 1.48378 1.54828 1.75594 2.03848 2.12737 2.49354 2.82748 3.20836 3.31094 3.55425 3.70780 3.74038 3.75877 3.78238 3.92619 3.93424 4.03910 4.11427 4.13043 4.18139 4.32489 4.35184 4.48712 4.63201 4.64158 4.69562 4.73275 4.74274 4.77479 4.82309 4.88471 4.90582 5.00180 5.02888 5.10873 5.18543 5.19672 5.22667 5.25442 5.42749 5.44150 5.46193 5.50968 5.69383 5.83586 6.27158 6.32364 6.45838 6.82120 7.11580 7.21908 7.79059 8.43533 9.24216 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.001904 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.202311 B =14702.785805 C =15551.427563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.147 4.147 4 O -0.300 6.300 5 C 0.127 3.873 6 C -0.176 4.176 7 C -0.086 4.086 8 C 0.053 3.947 9 N -0.437 5.437 10 C 0.001 3.999 11 C 0.560 3.440 12 O -0.560 6.560 13 N -0.703 5.703 14 C 0.125 3.875 15 C -0.099 4.099 16 C -0.083 4.083 17 H 0.079 0.921 18 C -0.121 4.121 19 C 0.150 3.850 20 N -0.630 5.630 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.982 3.018 26 H -0.276 1.276 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.133 3.867 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.199 0.801 40 H 0.417 0.583 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.072 0.928 48 H -0.016 1.016 49 H 0.248 0.752 50 H 0.012 0.988 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -4.954 -36.177 37.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 C -0.204 4.204 4 O -0.212 6.212 5 C 0.076 3.924 6 C -0.202 4.202 7 C -0.105 4.105 8 C -0.109 4.109 9 N -0.149 5.149 10 C -0.135 4.135 11 C 0.347 3.653 12 O -0.438 6.438 13 N -0.356 5.356 14 C 0.001 3.999 15 C -0.137 4.137 16 C -0.103 4.103 17 H 0.098 0.902 18 C -0.160 4.160 19 C 0.025 3.975 20 N -0.356 5.356 21 C -0.372 4.372 22 H 0.093 0.907 23 C -0.261 4.261 24 N -0.598 5.598 25 Si 0.810 3.190 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.008 3.992 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.192 0.808 38 H 0.206 0.794 39 H 0.215 0.785 40 H 0.255 0.745 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.002 0.998 49 H 0.057 0.943 50 H 0.030 0.970 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.280 -4.303 -34.986 35.805 hybrid contribution -0.801 0.700 0.593 1.218 sum -7.080 -3.603 -34.394 35.299 Atomic orbital electron populations 1.22381 0.93697 1.03302 1.03944 1.22931 0.95481 0.94372 0.86816 1.21874 1.01676 0.93174 1.03715 1.86462 1.79425 1.15273 1.40009 1.20270 0.93020 0.84612 0.94499 1.22177 1.03617 0.96384 0.98046 1.22743 0.93980 0.93595 1.00224 1.23419 0.96710 1.02170 0.88622 1.67541 1.14407 1.05317 1.27681 1.20409 1.07355 0.90394 0.95309 1.18131 0.77793 0.86378 0.83028 1.90806 1.57221 1.14712 1.81102 1.45765 1.61241 1.11899 1.16653 1.21334 0.98570 0.95382 0.84588 1.21621 1.01712 0.97163 0.93177 1.21997 0.96366 0.97945 0.93960 0.90216 1.22880 1.00814 0.97735 0.94545 1.21759 0.84720 0.94524 0.96500 1.44945 1.19039 1.70594 1.00996 1.19422 0.99311 1.32459 0.85989 0.90671 1.25661 0.98942 1.01868 0.99649 1.70060 1.21992 1.49194 1.18591 0.85102 0.77879 0.77928 0.78123 1.20209 1.21556 1.20643 1.21616 0.96737 0.96739 0.84075 0.88037 0.93042 0.91691 0.88611 0.92983 0.92597 0.87456 0.80776 0.79419 0.78470 0.74523 0.91793 0.93256 0.90917 0.88486 0.91418 0.89453 0.90957 0.99835 0.94271 0.97021 0.95725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.19 71.98 0.66 -1.27 16 2 C 0.06 0.85 2.85 30.59 0.09 0.94 16 3 C -0.15 -2.04 9.56 71.98 0.69 -1.35 16 4 O -0.30 -7.39 7.86 -68.60 -0.54 -7.93 16 5 C 0.13 2.76 6.62 22.94 0.15 2.91 16 6 C -0.18 -2.07 8.34 22.55 0.19 -1.88 16 7 C -0.09 -0.63 10.10 22.41 0.23 -0.41 16 8 C 0.05 0.61 11.17 84.89 0.95 1.56 16 9 N -0.44 -8.78 9.54 -184.63 -1.76 -10.54 16 10 C 0.00 0.04 6.76 41.93 0.28 0.32 16 11 C 0.56 17.63 7.80 86.78 0.68 18.30 16 12 O -0.56 -21.72 15.14 17.11 0.26 -21.46 16 13 N -0.70 -19.08 5.55 -465.98 -2.58 -21.66 16 14 C 0.12 3.61 5.54 86.38 0.48 4.09 16 15 C -0.10 -2.62 4.72 30.59 0.14 -2.47 16 16 C -0.08 -2.87 2.95 -9.61 -0.03 -2.90 16 17 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.12 -4.54 6.54 31.98 0.21 -4.33 16 19 C 0.15 7.74 5.89 86.86 0.51 8.25 16 20 N -0.63 -34.68 3.40 -691.21 -2.35 -37.03 16 21 C -0.24 -14.49 10.28 84.03 0.86 -13.62 16 22 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 23 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 24 N -0.95 -58.59 10.09 21.65 0.22 -58.37 16 25 Si 0.98 47.61 29.55 68.60 2.03 49.63 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 29 C 0.13 5.94 6.13 86.67 0.53 6.47 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.65 6.94 -2.39 -0.02 0.64 16 33 H 0.10 0.84 6.35 -2.38 -0.02 0.83 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.18 0.95 5.60 -2.91 -0.02 0.93 16 38 H 0.19 -0.30 8.06 -2.91 -0.02 -0.33 16 39 H 0.20 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.42 9.44 7.80 -92.71 -0.72 8.72 16 41 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 43 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 44 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 46 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.07 4.21 5.87 -2.39 -0.01 4.20 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.02 1.09 7.73 -2.39 -0.02 1.07 16 Total: -1.00 -82.97 408.10 2.56 -80.41 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.21 Total: 15.97 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.09 Total: 10.98 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -6.48 Total: -127.60 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.28 Total: -29.39 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.63 kcal Total: -82.97 2.56 -80.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267567045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.610 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds