Wall clock time and date at job start Wed Apr 1 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35420 * 116.99736 * 2 1 4 4 N 1.32241 * 119.80430 * 359.72815 * 3 2 1 5 5 C 1.31877 * 121.80214 * 179.70937 * 4 3 2 6 6 C 1.38361 * 121.18527 * 0.57007 * 5 4 3 7 7 C 1.38341 * 119.45643 * 359.71639 * 6 5 4 8 8 C 1.39988 * 118.35079 * 0.02562 * 7 6 5 9 9 C 1.47522 * 120.59847 * 179.97438 * 8 7 6 10 10 O 1.21581 * 120.00119 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99747 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00052 * 173.99285 * 11 9 8 13 13 C 1.53002 * 109.46915 * 51.15343 * 12 11 9 14 14 N 1.46505 * 109.46801 * 54.13534 * 13 12 11 15 15 C 1.36939 * 119.99828 * 183.52726 * 14 13 12 16 16 H 1.07994 * 120.00106 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00252 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47286 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47090 * 120.00283 * 19 17 15 22 22 H 1.48500 * 109.46973 * 239.99676 * 19 17 15 23 23 C 1.53002 * 109.47527 * 171.15373 * 12 11 9 24 24 C 1.53002 * 109.46723 * 59.99854 * 23 12 11 25 25 C 1.53000 * 109.46846 * 60.00437 * 24 23 12 26 26 C 1.52998 * 109.47234 * 299.99859 * 25 24 23 27 27 C 1.52994 * 109.47323 * 59.99903 * 26 25 24 28 28 H 1.08999 * 109.47191 * 60.00333 * 27 26 25 29 29 C 1.53007 * 109.47226 * 180.02562 * 27 26 25 30 30 H 1.08997 * 109.46756 * 60.00524 * 1 2 3 31 31 H 1.08994 * 109.47013 * 299.99809 * 1 2 3 32 32 H 1.08998 * 109.46528 * 180.02562 * 1 2 3 33 33 H 1.08003 * 119.40663 * 180.28689 * 5 4 3 34 34 H 1.07994 * 120.27338 * 179.74771 * 6 5 4 35 35 H 1.07998 * 120.82161 * 180.02562 * 7 6 5 36 36 H 0.97002 * 120.00476 * 353.99910 * 11 9 8 37 37 H 1.08995 * 109.47035 * 174.13288 * 13 12 11 38 38 H 1.09000 * 109.47342 * 294.13673 * 13 12 11 39 39 H 0.97003 * 120.00334 * 3.52685 * 14 13 12 40 40 H 0.97003 * 120.00186 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47213 * 180.02562 * 23 12 11 42 42 H 1.09001 * 109.46806 * 300.00418 * 23 12 11 43 43 H 1.08998 * 109.46999 * 179.97438 * 24 23 12 44 44 H 1.08999 * 109.47623 * 300.00174 * 24 23 12 45 45 H 1.09007 * 109.47079 * 59.99786 * 25 24 23 46 46 H 1.09004 * 109.47261 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47401 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.46715 * 299.99945 * 26 25 24 49 49 H 1.09001 * 109.46989 * 172.02057 * 29 27 26 50 50 H 1.09003 * 109.46827 * 292.02301 * 29 27 26 51 51 H 1.08996 * 109.46960 * 52.02405 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 -0.0054 5 6 1.8771 3.5084 0.0000 6 6 3.2526 3.6575 0.0000 7 6 4.0588 2.5333 0.0001 8 6 3.4450 1.2752 -0.0003 9 6 4.2570 0.0435 -0.0008 10 8 3.7126 -1.0436 -0.0017 11 7 5.6024 0.1234 -0.0003 12 6 6.4084 -1.0927 0.1319 13 6 5.9407 -2.1284 -0.8926 14 7 5.9644 -1.5354 -2.2320 15 6 5.5161 -2.2550 -3.3074 16 1 5.1447 -3.2594 -3.1681 17 6 5.5380 -1.6928 -4.5765 18 7 5.9892 -0.4681 -4.7461 19 14 4.9258 -2.6742 -6.0433 20 1 4.4737 -4.0137 -5.5889 21 1 3.7912 -1.9578 -6.6795 22 1 6.0263 -2.8314 -7.0278 23 6 7.8806 -0.7585 -0.1163 24 6 8.3482 0.2772 0.9082 25 6 8.1853 -0.2917 2.3191 26 6 6.7131 -0.6261 2.5674 27 6 6.2454 -1.6616 1.5429 28 1 6.8451 -2.5665 1.6413 29 6 4.7730 -1.9955 1.7908 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.2484 4.3866 0.0000 34 1 3.6933 4.6435 0.0004 35 1 5.1349 2.6241 0.0005 36 1 6.0371 0.9862 -0.0875 37 1 6.6054 -2.9918 -0.8657 38 1 4.9253 -2.4439 -0.6528 39 1 6.2976 -0.6330 -2.3572 40 1 6.0049 -0.0755 -5.6330 41 1 8.4802 -1.6635 -0.0183 42 1 7.9967 -0.3532 -1.1215 43 1 9.3972 0.5150 0.7317 44 1 7.7486 1.1821 0.8098 45 1 8.7850 -1.1966 2.4175 46 1 8.5188 0.4459 3.0491 47 1 6.5969 -1.0309 3.5727 48 1 6.1135 0.2789 2.4690 49 1 4.4010 -2.6219 0.9800 50 1 4.6756 -2.5291 2.7363 51 1 4.1934 -1.0733 1.8326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267870614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:45 Heat of formation + Delta-G solvation = -6.791887 kcal Electronic energy + Delta-G solvation = -33422.496630 eV Core-core repulsion = 29323.355331 eV Total energy + Delta-G solvation = -4099.141298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03840 -40.13554 -37.77242 -37.41589 -34.52681 -33.44791 -32.66187 -32.12108 -31.09297 -30.55906 -29.24832 -27.15034 -26.28180 -24.90949 -24.54892 -22.96116 -22.78336 -21.12275 -21.04704 -20.35361 -18.77271 -18.34555 -17.40933 -17.06448 -16.92761 -15.95937 -15.54821 -15.14740 -15.03939 -14.49105 -14.42461 -14.24524 -14.00298 -13.72138 -13.69559 -13.45742 -13.25625 -13.09551 -12.87062 -12.53361 -12.42991 -12.19723 -11.77017 -11.70825 -11.63407 -11.35071 -11.26395 -11.13219 -11.07362 -10.80666 -10.73562 -10.69984 -10.33879 -10.03173 -9.95988 -9.86431 -9.78633 -9.57688 -9.51005 -9.04877 -8.56634 -8.41648 -8.16821 -6.68458 -5.63291 -2.87191 0.79946 1.26916 3.18574 3.29059 3.50938 3.56225 3.57398 3.59500 4.05924 4.28580 4.69982 4.72332 4.86240 4.89496 4.93328 4.94160 5.04755 5.18129 5.30863 5.32396 5.36811 5.41483 5.46043 5.65439 5.66721 5.69700 5.70382 5.72957 5.78014 5.82149 5.86675 6.03212 6.06864 6.12752 6.18028 6.28311 6.31691 6.33169 6.35923 6.43928 6.46757 6.60155 6.74065 6.76033 6.91248 7.19878 7.33774 7.36214 7.76887 7.85669 8.08783 8.56928 8.86618 9.68221 10.28539 10.63772 11.60383 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007135 B = 0.005626 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.529617 B = 4975.758139 C = 7111.590208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.265 6.265 3 C 0.369 3.631 4 N -0.548 5.548 5 C 0.156 3.844 6 C -0.222 4.222 7 C -0.011 4.011 8 C -0.194 4.194 9 C 0.564 3.436 10 O -0.486 6.486 11 N -0.708 5.708 12 C 0.183 3.817 13 C 0.132 3.868 14 N -0.722 5.722 15 C -0.218 4.218 16 H 0.068 0.932 17 C -0.020 4.020 18 N -0.938 5.938 19 Si 0.902 3.098 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.294 1.294 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.110 4.110 27 C -0.092 4.092 28 H 0.072 0.928 29 C -0.143 4.143 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.389 0.611 37 H 0.013 0.987 38 H 0.068 0.932 39 H 0.380 0.620 40 H 0.250 0.750 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.026 0.974 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 8.717 16.947 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.169 6.169 3 C 0.189 3.811 4 N -0.273 5.273 5 C 0.000 4.000 6 C -0.243 4.243 7 C -0.037 4.037 8 C -0.200 4.200 9 C 0.350 3.650 10 O -0.360 6.360 11 N -0.361 5.361 12 C 0.098 3.902 13 C 0.005 3.995 14 N -0.365 5.365 15 C -0.350 4.350 16 H 0.086 0.914 17 C -0.214 4.214 18 N -0.589 5.589 19 Si 0.734 3.266 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.222 1.222 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.112 4.112 28 H 0.091 0.909 29 C -0.199 4.199 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.177 0.823 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.224 0.776 37 H 0.030 0.970 38 H 0.085 0.915 39 H 0.214 0.786 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.045 0.955 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.172 7.354 16.866 18.671 hybrid contribution 0.686 0.640 -1.156 1.489 sum -2.486 7.994 15.710 17.801 Atomic orbital electron populations 1.22908 0.77989 1.03126 1.01892 1.86569 1.21904 1.22861 1.85544 1.19871 0.88273 0.85007 0.87902 1.67432 1.40502 0.98724 1.20621 1.22548 0.93009 0.93696 0.90790 1.21867 0.94781 0.99754 1.07855 1.21626 1.00516 0.90740 0.90826 1.20243 0.91730 0.95527 1.12534 1.17350 0.82159 0.87825 0.77677 1.90818 1.71888 1.27233 1.46109 1.45667 1.05328 1.09579 1.75517 1.20559 0.89806 0.85313 0.94567 1.21340 1.00329 0.92843 0.85027 1.42178 1.76587 1.16745 1.01024 1.19269 1.32520 0.96899 0.86302 0.91450 1.24636 1.02857 0.96635 0.97313 1.69653 1.53737 1.14106 1.21364 0.86164 0.77916 0.79136 0.83374 1.20689 1.22199 1.22167 1.21797 0.94346 0.99837 0.99861 1.21557 1.00802 0.98430 0.94857 1.21545 0.96846 1.00570 0.96604 1.21548 0.95655 0.99251 0.98292 1.21492 0.97944 0.97927 0.93854 0.90931 1.22399 0.94597 1.02578 1.00365 0.92390 0.92647 0.88515 0.82268 0.84208 0.84123 0.77576 0.96983 0.91467 0.78622 0.94002 0.90662 0.90172 0.91996 0.92470 0.92116 0.92580 0.92594 0.92181 0.89765 0.95548 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.27 -4.69 8.58 -39.72 -0.34 -5.03 16 3 C 0.37 6.21 7.51 -16.61 -0.12 6.08 16 4 N -0.55 -7.95 9.21 -12.98 -0.12 -8.07 16 5 C 0.16 1.75 11.17 -17.49 -0.20 1.56 16 6 C -0.22 -2.31 10.09 -39.50 -0.40 -2.71 16 7 C -0.01 -0.14 9.64 -38.89 -0.37 -0.51 16 8 C -0.19 -3.16 5.90 -104.69 -0.62 -3.77 16 9 C 0.56 10.21 5.82 -12.48 -0.07 10.14 16 10 O -0.49 -10.19 8.65 -16.48 -0.14 -10.33 16 11 N -0.71 -11.17 3.53 -48.64 -0.17 -11.35 16 12 C 0.18 2.98 0.32 -131.82 -0.04 2.93 16 13 C 0.13 2.83 4.44 -4.04 -0.02 2.81 16 14 N -0.72 -18.54 5.17 -59.91 -0.31 -18.85 16 15 C -0.22 -6.37 9.99 -15.06 -0.15 -6.52 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 18 N -0.94 -28.86 13.06 55.49 0.72 -28.14 16 19 Si 0.90 23.53 29.55 -169.99 -5.02 18.51 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 23 C -0.12 -1.76 4.70 -26.73 -0.13 -1.88 16 24 C -0.12 -1.33 5.75 -26.73 -0.15 -1.49 16 25 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 26 C -0.11 -1.29 5.04 -26.73 -0.13 -1.43 16 27 C -0.09 -1.32 2.07 -90.62 -0.19 -1.51 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 C -0.14 -2.28 7.29 37.16 0.27 -2.01 16 30 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.39 6.53 -52.49 -0.34 1.04 16 36 H 0.39 5.28 5.19 -40.82 -0.21 5.07 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 1.58 4.24 -51.93 -0.22 1.36 16 39 H 0.38 10.06 6.50 -40.82 -0.27 9.80 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.37 7.16 -51.93 -0.37 0.99 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 49 H 0.08 1.58 5.04 -51.93 -0.26 1.32 16 50 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 1.02 5.32 -51.93 -0.28 0.74 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -34.92 386.61 -8.82 -43.73 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -7.73 Total: 12.54 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.53 Total: 1.15 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: 0.12 Total: -66.40 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.48 Total: -15.36 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.92 -8.82 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267870614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.941 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds