Wall clock time and date at job start Wed Apr 1 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35420 * 116.99736 * 2 1 4 4 N 1.32241 * 119.80430 * 359.72815 * 3 2 1 5 5 C 1.31877 * 121.80214 * 179.70937 * 4 3 2 6 6 C 1.38361 * 121.18527 * 0.57007 * 5 4 3 7 7 C 1.38341 * 119.45643 * 359.71639 * 6 5 4 8 8 C 1.39988 * 118.35079 * 0.02562 * 7 6 5 9 9 C 1.47522 * 120.59847 * 179.97438 * 8 7 6 10 10 O 1.21581 * 120.00119 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99747 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00052 * 173.99285 * 11 9 8 13 13 C 1.53002 * 109.46915 * 51.15343 * 12 11 9 14 14 N 1.46505 * 109.46801 * 54.13534 * 13 12 11 15 15 C 1.36939 * 119.99828 * 183.52726 * 14 13 12 16 16 H 1.07994 * 120.00106 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00252 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47286 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47090 * 120.00283 * 19 17 15 22 22 H 1.48500 * 109.46973 * 239.99676 * 19 17 15 23 23 C 1.53002 * 109.47527 * 171.15373 * 12 11 9 24 24 C 1.53002 * 109.46723 * 59.99854 * 23 12 11 25 25 C 1.53000 * 109.46846 * 60.00437 * 24 23 12 26 26 C 1.52998 * 109.47234 * 299.99859 * 25 24 23 27 27 C 1.52994 * 109.47323 * 59.99903 * 26 25 24 28 28 H 1.08999 * 109.47191 * 60.00333 * 27 26 25 29 29 C 1.53007 * 109.47226 * 180.02562 * 27 26 25 30 30 H 1.08997 * 109.46756 * 60.00524 * 1 2 3 31 31 H 1.08994 * 109.47013 * 299.99809 * 1 2 3 32 32 H 1.08998 * 109.46528 * 180.02562 * 1 2 3 33 33 H 1.08003 * 119.40663 * 180.28689 * 5 4 3 34 34 H 1.07994 * 120.27338 * 179.74771 * 6 5 4 35 35 H 1.07998 * 120.82161 * 180.02562 * 7 6 5 36 36 H 0.97002 * 120.00476 * 353.99910 * 11 9 8 37 37 H 1.08995 * 109.47035 * 174.13288 * 13 12 11 38 38 H 1.09000 * 109.47342 * 294.13673 * 13 12 11 39 39 H 0.97003 * 120.00334 * 3.52685 * 14 13 12 40 40 H 0.97003 * 120.00186 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47213 * 180.02562 * 23 12 11 42 42 H 1.09001 * 109.46806 * 300.00418 * 23 12 11 43 43 H 1.08998 * 109.46999 * 179.97438 * 24 23 12 44 44 H 1.08999 * 109.47623 * 300.00174 * 24 23 12 45 45 H 1.09007 * 109.47079 * 59.99786 * 25 24 23 46 46 H 1.09004 * 109.47261 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47401 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.46715 * 299.99945 * 26 25 24 49 49 H 1.09001 * 109.46989 * 172.02057 * 29 27 26 50 50 H 1.09003 * 109.46827 * 292.02301 * 29 27 26 51 51 H 1.08996 * 109.46960 * 52.02405 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 -0.0054 5 6 1.8771 3.5084 0.0000 6 6 3.2526 3.6575 0.0000 7 6 4.0588 2.5333 0.0001 8 6 3.4450 1.2752 -0.0003 9 6 4.2570 0.0435 -0.0008 10 8 3.7126 -1.0436 -0.0017 11 7 5.6024 0.1234 -0.0003 12 6 6.4084 -1.0927 0.1319 13 6 5.9407 -2.1284 -0.8926 14 7 5.9644 -1.5354 -2.2320 15 6 5.5161 -2.2550 -3.3074 16 1 5.1447 -3.2594 -3.1681 17 6 5.5380 -1.6928 -4.5765 18 7 5.9892 -0.4681 -4.7461 19 14 4.9258 -2.6742 -6.0433 20 1 4.4737 -4.0137 -5.5889 21 1 3.7912 -1.9578 -6.6795 22 1 6.0263 -2.8314 -7.0278 23 6 7.8806 -0.7585 -0.1163 24 6 8.3482 0.2772 0.9082 25 6 8.1853 -0.2917 2.3191 26 6 6.7131 -0.6261 2.5674 27 6 6.2454 -1.6616 1.5429 28 1 6.8451 -2.5665 1.6413 29 6 4.7730 -1.9955 1.7908 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.2484 4.3866 0.0000 34 1 3.6933 4.6435 0.0004 35 1 5.1349 2.6241 0.0005 36 1 6.0371 0.9862 -0.0875 37 1 6.6054 -2.9918 -0.8657 38 1 4.9253 -2.4439 -0.6528 39 1 6.2976 -0.6330 -2.3572 40 1 6.0049 -0.0755 -5.6330 41 1 8.4802 -1.6635 -0.0183 42 1 7.9967 -0.3532 -1.1215 43 1 9.3972 0.5150 0.7317 44 1 7.7486 1.1821 0.8098 45 1 8.7850 -1.1966 2.4175 46 1 8.5188 0.4459 3.0491 47 1 6.5969 -1.0309 3.5727 48 1 6.1135 0.2789 2.4690 49 1 4.4010 -2.6219 0.9800 50 1 4.6756 -2.5291 2.7363 51 1 4.1934 -1.0733 1.8326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267870614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:44 Heat of formation + Delta-G solvation = -30.780430 kcal Electronic energy + Delta-G solvation = -33423.536851 eV Core-core repulsion = 29323.355331 eV Total energy + Delta-G solvation = -4100.181520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.24615 -41.27843 -38.87873 -38.65181 -36.35542 -34.77939 -34.00130 -33.29394 -32.70321 -31.74088 -30.69230 -28.20095 -27.71529 -26.48674 -25.62667 -24.70008 -23.89939 -22.40271 -22.25706 -21.49043 -20.05454 -19.49036 -19.15126 -18.55495 -18.00183 -17.16092 -16.90643 -16.65862 -16.08310 -16.07322 -15.62875 -15.56135 -15.24096 -15.04214 -14.83340 -14.80103 -14.75023 -14.31003 -14.20324 -13.87950 -13.57297 -13.43707 -13.28497 -12.97598 -12.81514 -12.76119 -12.68796 -12.63218 -12.45276 -12.27697 -12.18172 -12.05177 -11.84766 -11.80531 -11.33488 -11.06124 -11.03235 -10.87751 -10.83838 -10.71186 -10.21874 -9.56303 -9.45042 -8.83777 -7.92874 -5.15916 -0.23386 0.28200 1.41084 1.42391 1.52098 2.10018 2.14264 2.32313 2.55806 2.92173 3.32397 3.40522 3.69839 3.80008 3.84143 3.87455 3.90823 4.04859 4.14880 4.22565 4.30046 4.37672 4.38327 4.40808 4.49814 4.55973 4.59913 4.65960 4.68133 4.73893 4.79809 4.91303 4.95131 4.97790 5.04367 5.11104 5.17548 5.23634 5.27546 5.31497 5.39165 5.43087 5.45760 5.47525 5.52031 5.59352 5.77856 5.87044 6.26791 6.31001 6.72122 6.85815 7.37601 7.56189 8.16051 8.43304 9.30578 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007135 B = 0.005626 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.529617 B = 4975.758139 C = 7111.590208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.301 6.301 3 C 0.342 3.658 4 N -0.561 5.561 5 C 0.155 3.845 6 C -0.206 4.206 7 C -0.011 4.011 8 C -0.230 4.230 9 C 0.556 3.444 10 O -0.526 6.526 11 N -0.698 5.698 12 C 0.191 3.809 13 C 0.132 3.868 14 N -0.724 5.724 15 C -0.230 4.230 16 H 0.058 0.942 17 C -0.073 4.073 18 N -0.964 5.964 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.288 1.288 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.103 4.103 27 C -0.087 4.087 28 H 0.076 0.924 29 C -0.132 4.132 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.202 0.798 34 H 0.185 0.815 35 H 0.165 0.835 36 H 0.401 0.599 37 H 0.005 0.995 38 H 0.045 0.955 39 H 0.375 0.625 40 H 0.248 0.752 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.040 0.960 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 11.235 18.371 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.206 6.206 3 C 0.163 3.837 4 N -0.286 5.286 5 C -0.002 4.002 6 C -0.225 4.225 7 C -0.037 4.037 8 C -0.236 4.236 9 C 0.344 3.656 10 O -0.404 6.404 11 N -0.351 5.351 12 C 0.104 3.896 13 C 0.005 3.995 14 N -0.366 5.366 15 C -0.362 4.362 16 H 0.076 0.924 17 C -0.265 4.265 18 N -0.615 5.615 19 Si 0.793 3.207 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.215 1.215 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.107 4.107 28 H 0.094 0.906 29 C -0.189 4.189 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.218 0.782 34 H 0.202 0.798 35 H 0.183 0.817 36 H 0.238 0.762 37 H 0.023 0.977 38 H 0.063 0.937 39 H 0.208 0.792 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.073 9.880 18.317 20.915 hybrid contribution 0.277 -0.093 -1.583 1.610 sum -1.796 9.787 16.734 19.469 Atomic orbital electron populations 1.23041 0.76521 1.04066 1.02307 1.86510 1.23708 1.24366 1.86064 1.20118 0.88791 0.85364 0.89422 1.67483 1.40760 0.99225 1.21128 1.23402 0.94382 0.93685 0.88701 1.22368 0.94252 1.00913 1.05012 1.22004 1.02044 0.89867 0.89798 1.20306 0.91673 0.96169 1.15447 1.17802 0.82731 0.88231 0.76854 1.90807 1.72654 1.28854 1.48068 1.45563 1.04795 1.09902 1.74876 1.20431 0.90750 0.84314 0.94065 1.21404 0.99112 0.94358 0.84673 1.42216 1.76096 1.16326 1.01960 1.19528 1.32126 0.96879 0.87701 0.92358 1.25345 1.03710 0.97803 0.99669 1.69779 1.54841 1.15267 1.21657 0.85209 0.77242 0.78038 0.80171 1.20003 1.22412 1.21457 1.21727 0.92943 1.00971 0.99674 1.21538 1.01825 0.97453 0.94144 1.21521 0.95554 1.01481 0.96376 1.21494 0.96721 0.98078 0.97723 1.21453 0.96807 0.99064 0.93381 0.90568 1.22202 0.95615 1.01432 0.99616 0.92679 0.91368 0.87399 0.78154 0.79773 0.81727 0.76196 0.97690 0.93718 0.79200 0.94268 0.90729 0.92966 0.90341 0.91396 0.91688 0.90039 0.91253 0.92302 0.93280 0.94097 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.38 113.37 1.18 2.16 16 2 O -0.30 -11.38 8.58 -66.34 -0.57 -11.95 16 3 C 0.34 11.84 7.51 85.13 0.64 12.48 16 4 N -0.56 -15.90 9.21 -307.99 -2.84 -18.74 16 5 C 0.15 3.03 11.17 84.72 0.95 3.97 16 6 C -0.21 -3.53 10.09 22.32 0.23 -3.31 16 7 C -0.01 -0.26 9.64 22.72 0.22 -0.04 16 8 C -0.23 -7.59 5.90 -19.91 -0.12 -7.70 16 9 C 0.56 21.00 5.82 86.69 0.50 21.50 16 10 O -0.53 -23.69 8.65 16.85 0.15 -23.55 16 11 N -0.70 -22.30 3.53 -426.07 -1.50 -23.80 16 12 C 0.19 6.29 0.32 3.61 0.00 6.29 16 13 C 0.13 5.93 4.44 86.38 0.38 6.31 16 14 N -0.72 -38.77 5.17 -343.44 -1.77 -40.54 16 15 C -0.23 -13.88 9.99 84.03 0.84 -13.05 16 16 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 17 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 18 N -0.96 -60.28 13.06 21.65 0.28 -60.00 16 19 Si 0.96 49.33 29.55 68.60 2.03 51.36 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 23 C -0.12 -3.30 4.70 30.60 0.14 -3.16 16 24 C -0.11 -2.20 5.75 30.59 0.18 -2.02 16 25 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 26 C -0.10 -2.17 5.04 30.59 0.15 -2.02 16 27 C -0.09 -2.48 2.07 -10.79 -0.02 -2.50 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 C -0.13 -4.38 7.29 71.98 0.52 -3.86 16 30 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 31 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 32 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.17 2.80 6.53 -2.91 -0.02 2.78 16 36 H 0.40 10.56 5.19 -92.71 -0.48 10.08 16 37 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.05 2.27 4.24 -2.39 -0.01 2.26 16 39 H 0.38 20.58 6.50 -92.71 -0.60 19.98 16 40 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.79 7.16 -2.39 -0.02 1.78 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.20 6.70 -2.39 -0.02 1.18 16 45 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.06 1.28 7.60 -2.39 -0.02 1.27 16 49 H 0.05 1.98 5.04 -2.39 -0.01 1.97 16 50 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.05 1.69 5.32 -2.39 -0.01 1.68 16 Total: -1.00 -80.63 386.61 2.09 -78.54 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.12 Total: 39.34 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.44 Total: 9.35 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -5.83 Total: -143.08 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.42 Total: -35.50 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -80.63 2.09 -78.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267870614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.756 kcal (2) G-P(sol) polarization free energy of solvation -80.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds