Wall clock time and date at job start Wed Apr 1 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46981 * 2 1 4 4 C 1.53001 * 109.47220 * 240.00294 * 2 1 3 5 5 C 1.53004 * 109.46905 * 299.99606 * 4 2 1 6 6 C 1.52995 * 109.47034 * 300.00238 * 5 4 2 7 7 C 1.52998 * 109.47728 * 59.99836 * 6 5 4 8 8 C 1.53001 * 109.47551 * 119.99755 * 2 1 3 9 9 C 1.52997 * 109.47029 * 300.00248 * 8 2 1 10 10 N 1.46505 * 109.46899 * 178.60706 * 9 8 2 11 11 C 1.36935 * 119.99815 * 185.05295 * 10 9 8 12 12 H 1.08000 * 120.00311 * 359.97438 * 11 10 9 13 13 C 1.38817 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99891 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47137 * 60.00074 * 15 13 11 17 17 H 1.48496 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47134 * 300.00275 * 15 13 11 19 19 N 1.46502 * 109.47356 * 179.97438 * 8 2 1 20 20 C 1.34776 * 119.99674 * 56.28991 * 19 8 2 21 21 O 1.21540 * 120.00113 * 4.74479 * 20 19 8 22 22 C 1.47886 * 119.99654 * 184.73813 * 20 19 8 23 23 C 1.36297 * 119.76034 * 355.91812 * 22 20 19 24 24 C 1.40392 * 119.90850 * 179.97438 * 23 22 20 25 25 C 1.36119 * 119.41827 * 359.97438 * 24 23 22 26 26 C 1.41241 * 119.50738 * 359.97438 * 25 24 23 27 27 O 1.21957 * 119.95548 * 179.97438 * 26 25 24 28 28 N 1.34674 * 120.08473 * 359.74248 * 26 25 24 29 29 C 1.46502 * 119.70396 * 180.25078 * 28 26 25 30 30 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47115 * 299.99930 * 1 2 3 32 32 H 1.08990 * 109.47568 * 59.99749 * 1 2 3 33 33 H 1.09001 * 109.47373 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47388 * 59.99658 * 4 2 1 35 35 H 1.08991 * 109.47068 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46751 * 60.00053 * 5 4 2 37 37 H 1.09001 * 109.47200 * 299.99539 * 6 5 4 38 38 H 1.09000 * 109.46957 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47022 * 59.99595 * 7 6 5 40 40 H 1.08992 * 109.47610 * 180.02562 * 7 6 5 41 41 H 1.08994 * 109.47453 * 298.60611 * 9 8 2 42 42 H 1.09002 * 109.47233 * 58.61124 * 9 8 2 43 43 H 0.97000 * 119.99980 * 5.05248 * 10 9 8 44 44 H 0.97000 * 119.99678 * 180.02562 * 14 13 11 45 45 H 0.96994 * 119.99974 * 236.29749 * 19 8 2 46 46 H 1.07997 * 120.04292 * 359.97438 * 23 22 20 47 47 H 1.07997 * 120.29738 * 180.02562 * 24 23 22 48 48 H 1.07996 * 120.25224 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.47082 * 264.19354 * 29 28 26 50 50 H 1.09004 * 109.47010 * 24.19087 * 29 28 26 51 51 H 1.08994 * 109.47090 * 144.19308 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8849 0.0000 7 6 1.5301 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2492 9 6 1.5300 0.0001 2.4985 10 7 1.9909 -0.7096 3.6944 11 6 1.5708 -0.3069 4.9339 12 1 0.9001 0.5341 5.0300 13 6 2.0071 -0.9797 6.0671 14 7 2.8249 -2.0044 5.9500 15 14 1.4346 -0.4300 7.7581 16 1 -0.0456 -0.5222 7.8337 17 1 2.0392 -1.3053 8.7941 18 1 1.8555 0.9750 7.9906 19 7 3.5051 -0.7217 1.2489 20 6 4.1793 0.4428 1.1730 21 8 3.5750 1.4972 1.1918 22 6 5.6543 0.4376 1.0669 23 6 6.3330 -0.7426 1.1303 24 6 7.7333 -0.7512 1.0294 25 6 8.3992 0.4249 0.8682 26 6 7.6711 1.6336 0.8046 27 8 8.2595 2.6921 0.6609 28 7 6.3277 1.6181 0.8979 29 6 5.5805 2.8761 0.8254 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.1300 -0.7216 -1.2491 34 1 1.6766 -0.2074 -2.1393 35 1 1.8929 -2.6774 -2.1394 36 1 0.4400 -2.1637 -1.2492 37 1 3.1300 -2.8849 -0.0001 38 1 1.6771 -3.9127 -0.0003 39 1 0.4401 -2.1637 1.2493 40 1 1.8938 -2.6772 2.1392 41 1 1.9135 1.0202 2.5110 42 1 0.4403 0.0216 2.4861 43 1 2.5936 -1.4648 3.6082 44 1 3.1294 -2.4747 6.7418 45 1 3.9898 -1.5601 1.3032 46 1 5.7943 -1.6699 1.2579 47 1 8.2773 -1.6829 1.0784 48 1 9.4762 0.4339 0.7887 49 1 5.3754 3.2355 1.8338 50 1 6.1705 3.6187 0.2881 51 1 4.6398 2.7102 0.3004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267874808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:36 Heat of formation + Delta-G solvation = -17.821038 kcal Electronic energy + Delta-G solvation = -33070.379988 eV Core-core repulsion = 28970.760430 eV Total energy + Delta-G solvation = -4099.619558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67543 -40.55462 -38.35199 -36.68229 -35.05826 -34.52390 -33.53032 -32.20537 -31.52596 -30.17412 -29.33699 -27.57308 -26.60362 -25.18814 -24.74509 -23.08545 -22.64335 -22.07562 -21.47806 -20.46028 -18.30433 -18.17723 -17.37390 -17.24203 -16.87396 -16.25325 -15.80105 -15.67094 -15.43632 -14.81891 -14.68002 -14.45448 -14.39072 -13.91799 -13.79640 -13.32053 -13.13951 -12.98530 -12.84864 -12.75628 -12.50702 -12.43948 -12.37963 -12.22579 -11.90747 -11.75163 -11.56556 -11.49444 -11.22786 -10.98746 -10.87430 -10.77373 -10.37667 -10.24391 -10.19027 -10.16457 -10.13087 -9.89949 -9.70134 -9.32205 -8.82959 -8.73986 -8.08724 -6.89938 -5.78877 -3.05280 0.37473 1.58333 2.42215 2.88196 3.17465 3.43250 3.47895 3.48855 3.62568 4.32667 4.51164 4.56572 4.73688 4.77109 4.78362 4.82097 5.05115 5.08707 5.17097 5.21999 5.40697 5.42541 5.48243 5.54422 5.56835 5.59112 5.67266 5.71102 5.72337 5.75631 5.87740 5.90972 5.93436 6.00460 6.05271 6.08521 6.11491 6.14529 6.21517 6.27729 6.35533 6.40521 6.42400 6.49428 6.63059 6.78919 6.96521 6.97954 7.54497 7.69640 7.93618 8.16400 8.40778 9.52413 10.09051 10.44248 11.44177 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007744 B = 0.004740 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.838171 B = 5905.180988 C = 7984.288196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.092 0.908 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.182 3.818 9 C 0.139 3.861 10 N -0.727 5.727 11 C -0.233 4.233 12 H 0.068 0.932 13 C -0.013 4.013 14 N -0.936 5.936 15 Si 0.905 3.095 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.287 1.287 19 N -0.688 5.688 20 C 0.561 3.439 21 O -0.513 6.513 22 C 0.129 3.871 23 C -0.187 4.187 24 C -0.023 4.023 25 C -0.225 4.225 26 C 0.511 3.489 27 O -0.554 6.554 28 N -0.472 5.472 29 C 0.050 3.950 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.381 0.619 44 H 0.254 0.746 45 H 0.400 0.600 46 H 0.149 0.851 47 H 0.142 0.858 48 H 0.151 0.849 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -2.573 -17.183 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.159 4.159 8 C 0.097 3.903 9 C 0.011 3.989 10 N -0.371 5.371 11 C -0.365 4.365 12 H 0.086 0.914 13 C -0.209 4.209 14 N -0.585 5.585 15 Si 0.736 3.264 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.214 1.214 19 N -0.339 5.339 20 C 0.345 3.655 21 O -0.391 6.391 22 C 0.017 3.983 23 C -0.212 4.212 24 C -0.045 4.045 25 C -0.247 4.247 26 C 0.313 3.687 27 O -0.436 6.436 28 N -0.183 5.183 29 C -0.091 4.091 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.215 0.785 44 H 0.064 0.936 45 H 0.237 0.763 46 H 0.166 0.834 47 H 0.160 0.840 48 H 0.169 0.831 49 H 0.096 0.904 50 H 0.102 0.898 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.439 -0.995 -17.137 17.339 hybrid contribution 0.265 -0.532 1.267 1.400 sum 2.704 -1.527 -15.870 16.171 Atomic orbital electron populations 1.21968 0.94636 1.02085 1.01875 1.21446 0.96244 1.01081 0.93272 0.89012 1.21510 1.00309 0.95547 0.97384 1.21576 1.01069 0.95623 0.97490 1.21567 1.00418 0.99042 0.94713 1.21827 1.02148 0.93573 0.98399 1.20695 0.77288 0.96443 0.95848 1.21188 0.96787 0.95869 0.85059 1.42241 1.57159 1.37098 1.00607 1.19163 1.22439 1.11011 0.83846 0.91422 1.24666 1.00226 0.98368 0.97633 1.69620 1.37598 1.22865 1.28413 0.86299 0.78061 0.77693 0.84345 1.21321 1.21751 1.21408 1.45821 1.07645 1.07736 1.72677 1.17660 0.85164 0.84953 0.77679 1.90695 1.69057 1.30196 1.49141 1.20290 0.93253 0.86552 0.98237 1.20892 0.94983 0.96609 1.08694 1.21389 0.93499 0.98915 0.90659 1.22345 1.01609 0.91430 1.09323 1.17332 0.80377 0.91383 0.79645 1.90922 1.66915 1.32799 1.53001 1.45421 1.08189 1.07728 1.56981 1.22627 0.97972 0.83610 1.04850 0.92136 0.91830 0.93001 0.92475 0.92365 0.92570 0.91635 0.92397 0.91819 0.89903 0.89844 0.94129 0.94986 0.78509 0.93597 0.76313 0.83377 0.84011 0.83121 0.90398 0.89832 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.15 37.15 0.30 -1.41 16 2 C -0.10 -1.25 1.98 -90.62 -0.18 -1.43 16 3 H 0.09 1.32 6.07 -51.92 -0.31 1.01 16 4 C -0.11 -1.13 5.29 -26.73 -0.14 -1.27 16 5 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 6 C -0.12 -1.19 5.75 -26.73 -0.15 -1.34 16 7 C -0.12 -1.58 4.31 -26.73 -0.12 -1.69 16 8 C 0.18 2.58 0.09 -131.82 -0.01 2.56 16 9 C 0.14 2.66 4.73 -4.04 -0.02 2.64 16 10 N -0.73 -17.11 5.12 -59.91 -0.31 -17.42 16 11 C -0.23 -6.36 9.99 -15.06 -0.15 -6.51 16 12 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 13 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 14 N -0.94 -27.15 13.06 55.49 0.72 -26.42 16 15 Si 0.90 22.30 29.55 -169.99 -5.02 17.27 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 N -0.69 -9.14 3.61 -48.53 -0.18 -9.31 16 20 C 0.56 8.25 7.04 -12.31 -0.09 8.17 16 21 O -0.51 -8.61 9.36 5.33 0.05 -8.56 16 22 C 0.13 1.74 6.63 -82.33 -0.55 1.20 16 23 C -0.19 -2.03 9.50 -39.47 -0.38 -2.40 16 24 C -0.02 -0.22 10.08 -39.53 -0.40 -0.62 16 25 C -0.22 -2.68 10.00 -39.20 -0.39 -3.08 16 26 C 0.51 7.91 7.43 -15.16 -0.11 7.80 16 27 O -0.55 -10.25 16.55 4.96 0.08 -10.16 16 28 N -0.47 -6.96 3.02 -122.80 -0.37 -7.33 16 29 C 0.05 0.71 9.16 59.85 0.55 1.26 16 30 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 31 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 7.56 -51.93 -0.39 0.21 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 37 H 0.06 0.52 6.94 -51.93 -0.36 0.16 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 40 H 0.08 1.29 6.88 -51.93 -0.36 0.93 16 41 H 0.04 0.88 6.25 -51.93 -0.32 0.55 16 42 H 0.03 0.63 6.36 -51.93 -0.33 0.30 16 43 H 0.38 9.16 6.41 -40.82 -0.26 8.90 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.40 4.54 5.43 -40.82 -0.22 4.32 16 46 H 0.15 1.25 6.30 -52.49 -0.33 0.92 16 47 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.08 1.14 7.22 -51.93 -0.38 0.77 16 51 H 0.12 1.60 5.56 -51.93 -0.29 1.31 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -33.09 380.90 -8.67 -41.76 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.31 Total: 12.30 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.08 Total: 2.14 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.13 Total: -60.49 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.13 Total: -18.72 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.09 -8.67 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267874808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.935 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds