Wall clock time and date at job start Wed Apr 1 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46981 * 2 1 4 4 C 1.53001 * 109.47220 * 240.00294 * 2 1 3 5 5 C 1.53004 * 109.46905 * 299.99606 * 4 2 1 6 6 C 1.52995 * 109.47034 * 300.00238 * 5 4 2 7 7 C 1.52998 * 109.47728 * 59.99836 * 6 5 4 8 8 C 1.53001 * 109.47551 * 119.99755 * 2 1 3 9 9 C 1.52997 * 109.47029 * 300.00248 * 8 2 1 10 10 N 1.46505 * 109.46899 * 178.60706 * 9 8 2 11 11 C 1.36935 * 119.99815 * 185.05295 * 10 9 8 12 12 H 1.08000 * 120.00311 * 359.97438 * 11 10 9 13 13 C 1.38817 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99891 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47137 * 60.00074 * 15 13 11 17 17 H 1.48496 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47134 * 300.00275 * 15 13 11 19 19 N 1.46502 * 109.47356 * 179.97438 * 8 2 1 20 20 C 1.34776 * 119.99674 * 56.28991 * 19 8 2 21 21 O 1.21540 * 120.00113 * 4.74479 * 20 19 8 22 22 C 1.47886 * 119.99654 * 184.73813 * 20 19 8 23 23 C 1.36297 * 119.76034 * 355.91812 * 22 20 19 24 24 C 1.40392 * 119.90850 * 179.97438 * 23 22 20 25 25 C 1.36119 * 119.41827 * 359.97438 * 24 23 22 26 26 C 1.41241 * 119.50738 * 359.97438 * 25 24 23 27 27 O 1.21957 * 119.95548 * 179.97438 * 26 25 24 28 28 N 1.34674 * 120.08473 * 359.74248 * 26 25 24 29 29 C 1.46502 * 119.70396 * 180.25078 * 28 26 25 30 30 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47115 * 299.99930 * 1 2 3 32 32 H 1.08990 * 109.47568 * 59.99749 * 1 2 3 33 33 H 1.09001 * 109.47373 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47388 * 59.99658 * 4 2 1 35 35 H 1.08991 * 109.47068 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46751 * 60.00053 * 5 4 2 37 37 H 1.09001 * 109.47200 * 299.99539 * 6 5 4 38 38 H 1.09000 * 109.46957 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47022 * 59.99595 * 7 6 5 40 40 H 1.08992 * 109.47610 * 180.02562 * 7 6 5 41 41 H 1.08994 * 109.47453 * 298.60611 * 9 8 2 42 42 H 1.09002 * 109.47233 * 58.61124 * 9 8 2 43 43 H 0.97000 * 119.99980 * 5.05248 * 10 9 8 44 44 H 0.97000 * 119.99678 * 180.02562 * 14 13 11 45 45 H 0.96994 * 119.99974 * 236.29749 * 19 8 2 46 46 H 1.07997 * 120.04292 * 359.97438 * 23 22 20 47 47 H 1.07997 * 120.29738 * 180.02562 * 24 23 22 48 48 H 1.07996 * 120.25224 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.47082 * 264.19354 * 29 28 26 50 50 H 1.09004 * 109.47010 * 24.19087 * 29 28 26 51 51 H 1.08994 * 109.47090 * 144.19308 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8849 0.0000 7 6 1.5301 -2.1637 1.2493 8 6 2.0400 -0.7212 1.2492 9 6 1.5300 0.0001 2.4985 10 7 1.9909 -0.7096 3.6944 11 6 1.5708 -0.3069 4.9339 12 1 0.9001 0.5341 5.0300 13 6 2.0071 -0.9797 6.0671 14 7 2.8249 -2.0044 5.9500 15 14 1.4346 -0.4300 7.7581 16 1 -0.0456 -0.5222 7.8337 17 1 2.0392 -1.3053 8.7941 18 1 1.8555 0.9750 7.9906 19 7 3.5051 -0.7217 1.2489 20 6 4.1793 0.4428 1.1730 21 8 3.5750 1.4972 1.1918 22 6 5.6543 0.4376 1.0669 23 6 6.3330 -0.7426 1.1303 24 6 7.7333 -0.7512 1.0294 25 6 8.3992 0.4249 0.8682 26 6 7.6711 1.6336 0.8046 27 8 8.2595 2.6921 0.6609 28 7 6.3277 1.6181 0.8979 29 6 5.5805 2.8761 0.8254 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.1300 -0.7216 -1.2491 34 1 1.6766 -0.2074 -2.1393 35 1 1.8929 -2.6774 -2.1394 36 1 0.4400 -2.1637 -1.2492 37 1 3.1300 -2.8849 -0.0001 38 1 1.6771 -3.9127 -0.0003 39 1 0.4401 -2.1637 1.2493 40 1 1.8938 -2.6772 2.1392 41 1 1.9135 1.0202 2.5110 42 1 0.4403 0.0216 2.4861 43 1 2.5936 -1.4648 3.6082 44 1 3.1294 -2.4747 6.7418 45 1 3.9898 -1.5601 1.3032 46 1 5.7943 -1.6699 1.2579 47 1 8.2773 -1.6829 1.0784 48 1 9.4762 0.4339 0.7887 49 1 5.3754 3.2355 1.8338 50 1 6.1705 3.6187 0.2881 51 1 4.6398 2.7102 0.3004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267874808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:35 Heat of formation + Delta-G solvation = -38.859448 kcal Electronic energy + Delta-G solvation = -33071.292282 eV Core-core repulsion = 28970.760430 eV Total energy + Delta-G solvation = -4100.531852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.76712 -41.66429 -39.46968 -37.81701 -36.48730 -35.81549 -34.77116 -33.50220 -32.80586 -31.55251 -30.49604 -28.67534 -27.81934 -26.64849 -25.75621 -24.74145 -23.70787 -23.05450 -22.62273 -21.62127 -19.50928 -19.30073 -19.02994 -18.41830 -17.89615 -17.39844 -16.95594 -16.87313 -16.65827 -16.24330 -15.97728 -15.58582 -15.50355 -15.22754 -15.06720 -14.70277 -14.57981 -14.20084 -13.93120 -13.88553 -13.76022 -13.54190 -13.39998 -13.24020 -13.01772 -12.89709 -12.81508 -12.77860 -12.66048 -12.44963 -12.25922 -12.11654 -11.91899 -11.80933 -11.42641 -11.22017 -11.16933 -11.05641 -10.98927 -10.88607 -10.37496 -9.94216 -9.16075 -8.90588 -7.93963 -5.18551 -0.61673 0.59211 1.35041 1.45578 1.47156 1.52823 1.74711 2.07248 2.55830 2.59316 3.27374 3.41348 3.56169 3.67639 3.83381 3.86826 3.87617 4.11723 4.13384 4.20936 4.25239 4.33829 4.38930 4.42338 4.47707 4.54368 4.58509 4.68287 4.76537 4.80128 4.86096 4.88523 4.93232 4.96416 5.01581 5.14144 5.17807 5.18686 5.22497 5.29491 5.32236 5.37393 5.43551 5.45083 5.50072 5.53352 5.57741 5.75327 5.89298 6.29487 6.44976 6.81548 7.05965 7.37603 8.12325 8.40382 9.28575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007744 B = 0.004740 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3614.838171 B = 5905.180988 C = 7984.288196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.104 4.104 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.192 3.808 9 C 0.141 3.859 10 N -0.729 5.729 11 C -0.242 4.242 12 H 0.062 0.938 13 C -0.064 4.064 14 N -0.959 5.959 15 Si 0.961 3.039 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.289 1.289 19 N -0.679 5.679 20 C 0.557 3.443 21 O -0.542 6.542 22 C 0.096 3.904 23 C -0.162 4.162 24 C -0.003 4.003 25 C -0.231 4.231 26 C 0.493 3.507 27 O -0.601 6.601 28 N -0.479 5.479 29 C 0.057 3.943 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.029 0.971 43 H 0.378 0.622 44 H 0.251 0.749 45 H 0.411 0.589 46 H 0.178 0.822 47 H 0.192 0.808 48 H 0.170 0.830 49 H 0.061 0.939 50 H 0.082 0.918 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -5.277 -18.583 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.153 4.153 8 C 0.106 3.894 9 C 0.013 3.987 10 N -0.372 5.372 11 C -0.374 4.374 12 H 0.080 0.920 13 C -0.257 4.257 14 N -0.610 5.610 15 Si 0.791 3.209 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.216 1.216 19 N -0.331 5.331 20 C 0.343 3.657 21 O -0.422 6.422 22 C -0.014 4.014 23 C -0.186 4.186 24 C -0.024 4.024 25 C -0.253 4.253 26 C 0.297 3.703 27 O -0.488 6.488 28 N -0.190 5.190 29 C -0.084 4.084 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.047 0.953 43 H 0.212 0.788 44 H 0.060 0.940 45 H 0.250 0.750 46 H 0.195 0.805 47 H 0.209 0.791 48 H 0.188 0.812 49 H 0.080 0.920 50 H 0.101 0.899 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.775 -3.735 -18.558 19.132 hybrid contribution 0.113 0.309 1.708 1.739 sum 2.888 -3.426 -16.850 17.435 Atomic orbital electron populations 1.21954 0.94002 1.02734 1.01667 1.21372 0.96740 0.99890 0.93565 0.91349 1.21470 1.00232 0.96280 0.96157 1.21560 1.01310 0.94550 0.97830 1.21552 1.01211 0.99281 0.93067 1.21745 1.01913 0.92430 0.99237 1.20519 0.77795 0.96987 0.94061 1.21228 0.96486 0.94854 0.86095 1.42299 1.56944 1.37124 1.00869 1.19454 1.21883 1.10536 0.85545 0.92037 1.25311 1.00974 0.98893 1.00566 1.69732 1.38707 1.23761 1.28809 0.85405 0.77927 0.76925 0.80654 1.20490 1.21786 1.21596 1.45711 1.07283 1.07917 1.72211 1.17930 0.85855 0.84817 0.77126 1.90688 1.69801 1.31247 1.50443 1.20336 0.92654 0.87129 1.01326 1.21440 0.95912 0.96470 1.04808 1.21870 0.92814 0.99946 0.87803 1.22545 1.02516 0.90649 1.09603 1.17994 0.80483 0.92216 0.79574 1.90885 1.67673 1.34475 1.55727 1.45424 1.08249 1.08070 1.57218 1.22469 0.98044 0.84101 1.03773 0.90992 0.93960 0.91329 0.92546 0.91321 0.90464 0.91295 0.91110 0.90445 0.90233 0.92405 0.96794 0.95328 0.78816 0.94011 0.75021 0.80452 0.79123 0.81243 0.92034 0.89941 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.15 71.98 0.59 -2.68 16 2 C -0.10 -2.33 1.98 -10.80 -0.02 -2.35 16 3 H 0.07 2.02 6.07 -2.38 -0.01 2.00 16 4 C -0.10 -1.89 5.29 30.60 0.16 -1.72 16 5 C -0.12 -1.71 5.65 30.59 0.17 -1.53 16 6 C -0.11 -1.88 5.75 30.59 0.18 -1.71 16 7 C -0.12 -2.84 4.31 30.59 0.13 -2.71 16 8 C 0.19 5.37 0.09 3.60 0.00 5.37 16 9 C 0.14 5.56 4.73 86.38 0.41 5.97 16 10 N -0.73 -34.99 5.12 -343.45 -1.76 -36.75 16 11 C -0.24 -13.40 9.99 84.04 0.84 -12.56 16 12 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 13 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 14 N -0.96 -55.78 13.06 21.65 0.28 -55.49 16 15 Si 0.96 46.08 29.55 68.60 2.03 48.11 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 17 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 18 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 19 N -0.68 -17.49 3.61 -425.72 -1.54 -19.03 16 20 C 0.56 16.47 7.04 86.80 0.61 17.08 16 21 O -0.54 -19.07 9.36 -3.84 -0.04 -19.10 16 22 C 0.10 2.53 6.63 40.45 0.27 2.79 16 23 C -0.16 -3.01 9.50 22.34 0.21 -2.79 16 24 C 0.00 -0.05 10.08 22.30 0.22 0.18 16 25 C -0.23 -5.03 10.00 22.51 0.23 -4.80 16 26 C 0.49 15.37 7.43 85.00 0.63 16.00 16 27 O -0.60 -23.08 16.55 -5.18 -0.09 -23.17 16 28 N -0.48 -14.42 3.02 -660.59 -1.99 -16.41 16 29 C 0.06 1.74 9.16 127.77 1.17 2.92 16 30 H 0.07 1.44 4.81 -2.39 -0.01 1.42 16 31 H 0.04 1.11 6.40 -2.39 -0.02 1.09 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.05 7.56 -2.39 -0.02 1.03 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 37 H 0.07 1.00 6.94 -2.39 -0.02 0.99 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 2.00 6.43 -2.39 -0.02 1.99 16 40 H 0.06 1.75 6.88 -2.39 -0.02 1.73 16 41 H 0.01 0.64 6.25 -2.39 -0.01 0.63 16 42 H 0.03 1.16 6.36 -2.39 -0.02 1.14 16 43 H 0.38 18.38 6.41 -92.71 -0.59 17.78 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 45 H 0.41 8.44 5.43 -92.71 -0.50 7.93 16 46 H 0.18 2.21 6.30 -2.91 -0.02 2.19 16 47 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.08 2.46 7.22 -2.38 -0.02 2.45 16 51 H 0.12 3.48 5.56 -2.39 -0.01 3.47 16 Total: -1.00 -74.93 380.90 3.05 -71.88 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -0.12 Total: 35.66 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.27 Total: 14.30 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -5.01 Total: -127.68 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.12 Total: -42.27 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.93 3.05 -71.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267874808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.021 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds