Wall clock time and date at job start Wed Apr 1 2020 05:25:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.46934 * 2 1
4 4 C 1.52990 * 109.47574 * 120.00531 * 2 1 3
5 5 C 1.52998 * 109.47574 * 180.02562 * 4 2 1
6 6 C 1.53006 * 109.46988 * 300.00230 * 5 4 2
7 7 C 1.52998 * 109.47109 * 59.99302 * 6 5 4
8 8 C 1.52990 * 109.47532 * 300.00288 * 7 6 5
9 9 C 1.52998 * 109.47532 * 179.97438 * 8 7 6
10 10 N 1.46504 * 109.47248 * 64.55395 * 9 8 7
11 11 C 1.36929 * 120.00369 * 185.75156 * 10 9 8
12 12 H 1.08003 * 119.99758 * 0.02562 * 11 10 9
13 13 C 1.38814 * 120.00332 * 180.02562 * 11 10 9
14 14 N 1.31619 * 119.99615 * 359.97438 * 13 11 10
15 15 Si 1.86802 * 120.00221 * 180.02562 * 13 11 10
16 16 H 1.48493 * 109.47417 * 59.99706 * 15 13 11
17 17 H 1.48495 * 109.46803 * 180.02562 * 15 13 11
18 18 H 1.48508 * 109.46600 * 299.99535 * 15 13 11
19 19 N 1.46498 * 109.47369 * 300.00236 * 8 7 6
20 20 C 1.34774 * 120.00233 * 194.09248 * 19 8 7
21 21 O 1.21536 * 120.00242 * 356.42317 * 20 19 8
22 22 C 1.47886 * 120.00118 * 176.41932 * 20 19 8
23 23 C 1.36301 * 119.75760 * 0.02562 * 22 20 19
24 24 C 1.40402 * 119.90370 * 179.97438 * 23 22 20
25 25 C 1.36106 * 119.42158 * 0.02652 * 24 23 22
26 26 C 1.41240 * 119.50816 * 359.97438 * 25 24 23
27 27 O 1.21963 * 119.95531 * 180.02562 * 26 25 24
28 28 N 1.34672 * 120.08506 * 359.97438 * 26 25 24
29 29 C 1.46502 * 119.69916 * 179.74446 * 28 26 25
30 30 H 1.08998 * 109.47360 * 186.89216 * 1 2 3
31 31 H 1.09009 * 109.46748 * 306.88683 * 1 2 3
32 32 H 1.08995 * 109.47483 * 66.88705 * 1 2 3
33 33 H 1.09001 * 109.47424 * 59.99769 * 4 2 1
34 34 H 1.09008 * 109.47422 * 300.00040 * 4 2 1
35 35 H 1.08995 * 109.47557 * 180.02562 * 5 4 2
36 36 H 1.09001 * 109.46934 * 59.99469 * 5 4 2
37 37 H 1.09002 * 109.46742 * 299.99954 * 6 5 4
38 38 H 1.09000 * 109.47263 * 180.02562 * 6 5 4
39 39 H 1.08997 * 109.46921 * 180.02562 * 7 6 5
40 40 H 1.09002 * 109.46786 * 60.00679 * 7 6 5
41 41 H 1.09000 * 109.47814 * 184.56011 * 9 8 7
42 42 H 1.09008 * 109.47241 * 304.55825 * 9 8 7
43 43 H 0.97009 * 119.99549 * 5.75607 * 10 9 8
44 44 H 0.96998 * 120.00274 * 179.97438 * 14 13 11
45 45 H 0.96998 * 119.99886 * 14.08360 * 19 8 7
46 46 H 1.07999 * 120.04562 * 359.97438 * 23 22 20
47 47 H 1.08005 * 120.28755 * 180.02562 * 24 23 22
48 48 H 1.07999 * 120.24589 * 179.97438 * 25 24 23
49 49 H 1.09002 * 109.47415 * 359.97438 * 29 28 26
50 50 H 1.08997 * 109.47095 * 120.00104 * 29 28 26
51 51 H 1.09009 * 109.47094 * 240.00215 * 29 28 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 1.2491
5 6 3.5700 -0.7207 1.2494
6 6 4.0805 -1.4415 0.0000
7 6 3.5704 -0.7202 -1.2491
8 6 2.0405 -0.7207 -1.2494
9 6 1.5303 0.0011 -2.4982
10 7 1.9275 -0.7489 -3.6923
11 6 1.6839 -0.2333 -4.9372
12 1 1.1993 0.7265 -5.0388
13 6 2.0598 -0.9442 -6.0687
14 7 2.6508 -2.1138 -5.9449
15 14 1.7281 -0.2405 -7.7670
16 1 2.4313 1.0595 -7.9102
17 1 2.2209 -1.1868 -8.7998
18 1 0.2676 -0.0352 -7.9411
19 7 1.5526 -2.1021 -1.2497
20 6 0.2608 -2.3605 -1.5342
21 8 -0.5142 -1.4443 -1.7265
22 6 -0.2137 -3.7590 -1.6124
23 6 0.6596 -4.7828 -1.3954
24 6 0.2122 -6.1117 -1.4684
25 6 -1.0940 -6.3625 -1.7568
26 6 -1.9775 -5.2829 -1.9773
27 8 -3.1498 -5.4983 -2.2358
28 7 -1.5274 -4.0159 -1.9013
29 6 -2.4500 -2.9025 -2.1370
30 1 -0.3634 -1.0202 0.1233
31 1 -0.3633 0.6169 0.8220
32 1 -0.3634 0.4034 -0.9451
33 1 1.6768 -1.7490 1.2491
34 1 1.6768 -0.2076 2.1392
35 1 3.9334 -1.2350 2.1390
36 1 3.9330 0.3071 1.2496
37 1 3.7175 -2.4693 -0.0003
38 1 5.1706 -1.4415 0.0004
39 1 3.9337 -1.2339 -2.1391
40 1 3.9334 0.3076 -1.2488
41 1 0.4434 0.0720 -2.4585
42 1 1.9584 1.0028 -2.5393
43 1 2.3630 -1.6109 -3.6011
44 1 2.9131 -2.6108 -6.7355
45 1 2.1594 -2.8308 -1.0454
46 1 1.6940 -4.5721 -1.1677
47 1 0.8988 -6.9277 -1.2971
48 1 -1.4523 -7.3796 -1.8167
49 1 -3.4432 -3.2939 -2.3570
50 1 -2.4955 -2.2739 -1.2478
51 1 -2.0975 -2.3113 -2.9823
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267874810.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:39
Heat of formation + Delta-G solvation = -6.103650 kcal
Electronic energy + Delta-G solvation = -33531.022714 eV
Core-core repulsion = 29431.911260 eV
Total energy + Delta-G solvation = -4099.111454 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.63722 -40.54048 -38.06543 -36.59888 -34.89303 -34.41096 -33.40275 -32.59836
-31.57600 -30.07217 -29.13510 -27.46641 -26.45541 -25.08569 -24.83460 -23.03161
-22.55849 -21.47771 -21.27308 -20.53327 -18.96984 -18.06322 -17.29650 -17.22111
-16.86660 -16.23214 -15.75979 -15.56250 -15.16686 -14.64501 -14.57318 -14.38510
-14.25077 -13.96768 -13.77909 -13.50341 -13.13741 -12.95119 -12.68652 -12.59710
-12.45205 -12.40439 -12.05653 -11.91903 -11.77286 -11.69074 -11.54473 -11.38197
-11.20840 -10.92361 -10.84599 -10.77753 -10.49542 -10.17246 -10.07982 -10.05062
-10.02546 -9.75344 -9.66777 -9.33888 -8.73551 -8.56901 -7.97298 -6.83562
-5.75519 -3.01198 0.49754 1.68574 2.52960 3.02599 3.29554 3.44874
3.49711 3.50355 3.74818 4.46660 4.58744 4.60577 4.76227 4.79466
4.79935 4.84245 5.13398 5.14953 5.17391 5.19102 5.45004 5.51800
5.55566 5.59788 5.60527 5.64811 5.66631 5.70758 5.81951 5.89584
5.97348 5.99521 6.04696 6.05020 6.12523 6.13935 6.17423 6.20417
6.28814 6.32528 6.35787 6.40033 6.53516 6.60289 6.68219 6.88162
7.06444 7.11819 7.65292 7.72303 8.03997 8.32004 8.43955 9.55590
10.13176 10.48280 11.47369
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007026 B = 0.005728 C = 0.003842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3984.118224 B = 4887.495623 C = 7286.793157
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.093 4.093
3 H 0.076 0.924
4 C -0.111 4.111
5 C -0.119 4.119
6 C -0.121 4.121
7 C -0.120 4.120
8 C 0.182 3.818
9 C 0.131 3.869
10 N -0.724 5.724
11 C -0.230 4.230
12 H 0.067 0.933
13 C -0.014 4.014
14 N -0.935 5.935
15 Si 0.903 3.097
16 H -0.287 1.287
17 H -0.292 1.292
18 H -0.287 1.287
19 N -0.692 5.692
20 C 0.556 3.444
21 O -0.494 6.494
22 C 0.137 3.863
23 C -0.193 4.193
24 C -0.022 4.022
25 C -0.228 4.228
26 C 0.513 3.487
27 O -0.556 6.556
28 N -0.471 5.471
29 C 0.063 3.937
30 H 0.056 0.944
31 H 0.030 0.970
32 H 0.081 0.919
33 H 0.060 0.940
34 H 0.057 0.943
35 H 0.057 0.943
36 H 0.061 0.939
37 H 0.057 0.943
38 H 0.064 0.936
39 H 0.083 0.917
40 H 0.077 0.923
41 H 0.063 0.937
42 H 0.024 0.976
43 H 0.381 0.619
44 H 0.253 0.747
45 H 0.397 0.603
46 H 0.146 0.854
47 H 0.140 0.860
48 H 0.150 0.850
49 H 0.088 0.912
50 H 0.085 0.915
51 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.414 -3.096 17.579 17.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.113 4.113
3 H 0.094 0.906
4 C -0.149 4.149
5 C -0.157 4.157
6 C -0.158 4.158
7 C -0.158 4.158
8 C 0.096 3.904
9 C 0.003 3.997
10 N -0.368 5.368
11 C -0.361 4.361
12 H 0.085 0.915
13 C -0.210 4.210
14 N -0.584 5.584
15 Si 0.735 3.265
16 H -0.214 1.214
17 H -0.218 1.218
18 H -0.214 1.214
19 N -0.345 5.345
20 C 0.341 3.659
21 O -0.369 6.369
22 C 0.024 3.976
23 C -0.218 4.218
24 C -0.043 4.043
25 C -0.250 4.250
26 C 0.314 3.686
27 O -0.439 6.439
28 N -0.182 5.182
29 C -0.077 4.077
30 H 0.075 0.925
31 H 0.049 0.951
32 H 0.100 0.900
33 H 0.078 0.922
34 H 0.076 0.924
35 H 0.076 0.924
36 H 0.080 0.920
37 H 0.076 0.924
38 H 0.082 0.918
39 H 0.102 0.898
40 H 0.096 0.904
41 H 0.080 0.920
42 H 0.041 0.959
43 H 0.215 0.785
44 H 0.063 0.937
45 H 0.233 0.767
46 H 0.163 0.837
47 H 0.158 0.842
48 H 0.168 0.832
49 H 0.107 0.893
50 H 0.104 0.896
51 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 0.008 -2.381 17.108 17.273
hybrid contribution 0.560 -0.377 -1.022 1.225
sum 0.568 -2.758 16.086 16.331
Atomic orbital electron populations
1.22305 0.93916 1.01733 1.01826 1.21500 0.96864 0.99224 0.93690
0.90616 1.21566 0.95155 1.00721 0.97441 1.21556 0.95838 1.00745
0.97543 1.21580 1.00422 0.99054 0.94766 1.21796 0.93224 1.02328
0.98423 1.20722 0.93536 0.80271 0.95850 1.21353 0.99946 0.93604
0.84799 1.42192 1.72086 1.22375 1.00181 1.19142 1.31641 1.01791
0.83567 0.91488 1.24658 1.01775 0.96993 0.97552 1.69622 1.46693
1.13790 1.28320 0.86317 0.77812 0.77823 0.84554 1.21392 1.21808
1.21433 1.45699 1.09077 1.09529 1.70236 1.17490 0.83357 0.86447
0.78654 1.90821 1.54798 1.44506 1.46812 1.20347 0.84688 0.95666
0.96862 1.20823 0.99865 0.91727 1.09380 1.21358 0.95520 0.96459
0.91007 1.22298 0.94220 0.99537 1.08964 1.17309 0.89317 0.82060
0.79897 1.90912 1.17596 1.83313 1.52041 1.45377 1.08014 1.09754
1.55045 1.22358 0.93611 0.87300 1.04467 0.92517 0.95115 0.89984
0.92158 0.92384 0.92410 0.92007 0.92446 0.91757 0.89831 0.90420
0.91951 0.95872 0.78515 0.93674 0.76685 0.83665 0.84201 0.83236
0.89332 0.89614 0.88791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.87 7.30 37.16 0.27 -1.60 16
2 C -0.09 -1.13 2.07 -90.62 -0.19 -1.31 16
3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
4 C -0.11 -1.10 5.04 -26.74 -0.13 -1.24 16
5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16
6 C -0.12 -1.17 5.75 -26.73 -0.15 -1.32 16
7 C -0.12 -1.55 4.71 -26.74 -0.13 -1.67 16
8 C 0.18 2.54 0.32 -131.82 -0.04 2.49 16
9 C 0.13 2.48 4.39 -4.04 -0.02 2.46 16
10 N -0.72 -17.07 5.02 -59.91 -0.30 -17.37 16
11 C -0.23 -6.29 9.99 -15.06 -0.15 -6.44 16
12 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16
13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16
14 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16
15 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16
16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
17 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16
18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
19 N -0.69 -9.13 3.49 -48.53 -0.17 -9.30 16
20 C 0.56 8.41 5.91 -12.31 -0.07 8.34 16
21 O -0.49 -8.35 6.50 5.33 0.03 -8.31 16
22 C 0.14 1.97 6.63 -82.33 -0.55 1.43 16
23 C -0.19 -2.23 9.50 -39.46 -0.38 -2.61 16
24 C -0.02 -0.23 10.08 -39.53 -0.40 -0.63 16
25 C -0.23 -2.94 10.00 -39.21 -0.39 -3.33 16
26 C 0.51 8.48 7.43 -15.17 -0.11 8.37 16
27 O -0.56 -10.85 16.39 4.95 0.08 -10.77 16
28 N -0.47 -7.46 3.02 -122.80 -0.37 -7.83 16
29 C 0.06 0.98 8.93 59.85 0.53 1.51 16
30 H 0.06 0.79 5.48 -51.93 -0.28 0.50 16
31 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16
32 H 0.08 1.28 5.17 -51.93 -0.27 1.01 16
33 H 0.06 0.61 7.61 -51.93 -0.39 0.21 16
34 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16
35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.06 0.50 6.61 -51.93 -0.34 0.16 16
38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
39 H 0.08 1.30 7.28 -51.93 -0.38 0.92 16
40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
41 H 0.06 1.29 4.20 -51.93 -0.22 1.07 16
42 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16
43 H 0.38 9.30 6.61 -40.82 -0.27 9.03 16
44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16
45 H 0.40 4.34 4.95 -40.82 -0.20 4.14 16
46 H 0.15 1.27 6.30 -52.49 -0.33 0.94 16
47 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16
48 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16
49 H 0.09 1.36 6.86 -51.93 -0.36 1.00 16
50 H 0.09 1.21 7.22 -51.93 -0.38 0.84 16
51 H 0.09 1.61 7.22 -51.92 -0.37 1.24 16
LS Contribution 380.74 15.07 5.74 5.74
Total: -1.00 -32.97 380.74 -9.01 -41.99
By element:
Atomic # 1 Polarization: 19.90 SS G_CDS: -7.57 Total: 12.33 kcal
Atomic # 6 Polarization: 4.88 SS G_CDS: -2.16 Total: 2.72 kcal
Atomic # 7 Polarization: -61.12 SS G_CDS: -0.12 Total: -61.23 kcal
Atomic # 8 Polarization: -19.20 SS G_CDS: 0.12 Total: -19.08 kcal
Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -32.97 -9.01 -41.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267874810.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.883 kcal
(2) G-P(sol) polarization free energy of solvation -32.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds