Wall clock time and date at job start Wed Apr 1 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35659 * 117.00538 * 2 1 4 4 C 1.39286 * 119.62170 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30484 * 180.02562 * 4 3 2 6 6 C 1.38776 * 118.56292 * 359.97438 * 5 4 3 7 7 C 1.39128 * 119.18550 * 359.97438 * 6 5 4 8 8 C 1.48156 * 119.69032 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99764 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99936 * 174.66410 * 10 8 7 12 12 C 1.52995 * 109.47499 * 303.94119 * 11 10 8 13 13 N 1.46503 * 109.47207 * 305.52653 * 12 11 10 14 14 C 1.36939 * 119.99909 * 175.03606 * 13 12 11 15 15 H 1.07999 * 119.99623 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99511 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00014 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47193 * 60.00090 * 18 16 14 20 20 H 1.48499 * 109.47188 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47184 * 300.00205 * 18 16 14 22 22 C 1.53002 * 109.46872 * 183.94420 * 11 10 8 23 23 C 1.53004 * 109.47012 * 300.00109 * 22 11 10 24 24 C 1.53000 * 109.47467 * 300.00343 * 23 22 11 25 25 C 1.52996 * 109.47153 * 59.99543 * 24 23 22 26 26 C 1.52998 * 109.47622 * 300.00574 * 25 24 23 27 27 H 1.09000 * 109.47542 * 179.97438 * 26 25 24 28 28 C 1.53006 * 109.46973 * 300.00165 * 26 25 24 29 29 N 1.31907 * 119.61454 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47043 * 299.99829 * 1 2 3 32 32 H 1.08997 * 109.47047 * 59.99828 * 1 2 3 33 33 H 1.07998 * 120.34678 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.71404 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.41231 * 180.02562 * 6 5 4 36 36 H 0.96993 * 119.99696 * 354.67193 * 10 8 7 37 37 H 1.09007 * 109.46752 * 65.52289 * 12 11 10 38 38 H 1.09001 * 109.47375 * 185.52016 * 12 11 10 39 39 H 0.96993 * 119.99788 * 355.03373 * 13 12 11 40 40 H 0.97005 * 119.99827 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.47281 * 60.00315 * 22 11 10 42 42 H 1.08996 * 109.47053 * 180.02562 * 22 11 10 43 43 H 1.09000 * 109.47226 * 180.02562 * 23 22 11 44 44 H 1.08996 * 109.47055 * 60.00193 * 23 22 11 45 45 H 1.09010 * 109.46770 * 299.99958 * 24 23 22 46 46 H 1.08993 * 109.47654 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.47597 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.47119 * 60.00809 * 25 24 23 49 49 H 1.09001 * 109.46973 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.46782 * 299.99703 * 28 26 25 51 51 H 1.09000 * 109.47369 * 59.99426 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 -0.0005 5 6 4.0577 2.5082 0.0000 6 6 3.2667 3.6485 0.0005 7 6 1.8820 3.5136 0.0000 8 6 1.0268 4.7234 0.0011 9 8 1.5355 5.8270 0.0020 10 7 -0.3153 4.6001 0.0011 11 6 -1.1603 5.7909 0.1202 12 6 -0.7864 6.5567 1.3908 13 7 -0.8630 5.6564 2.5440 14 6 -0.4723 6.0939 3.7814 15 1 -0.1073 7.1025 3.9070 16 6 -0.5454 5.2410 4.8742 17 7 -0.9898 4.0117 4.7208 18 14 -0.0131 5.8380 6.5622 19 1 -0.8440 7.0028 6.9600 20 1 -0.1870 4.7444 7.5516 21 1 1.4153 6.2414 6.5168 22 6 -2.6291 5.3687 0.1928 23 6 -3.0031 4.6029 -1.0779 24 6 -2.7908 5.5028 -2.2969 25 6 -1.3220 5.9250 -2.3695 26 6 -0.9480 6.6908 -1.0989 27 1 0.0985 6.9912 -1.1504 28 6 -1.8306 7.9344 -0.9745 29 7 1.3192 2.3102 0.0005 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 4.0240 0.3661 -0.0005 34 1 5.1350 2.5840 -0.0008 35 1 3.7204 4.6286 0.0005 36 1 -0.7216 3.7229 -0.0777 37 1 0.2291 6.9418 1.2973 38 1 -1.4783 7.3871 1.5315 39 1 -1.1906 4.7504 2.4310 40 1 -1.0413 3.4157 5.4845 41 1 -2.7804 4.7276 1.0612 42 1 -3.2579 6.2547 0.2810 43 1 -4.0496 4.3025 -1.0264 44 1 -2.3744 3.7170 -1.1664 45 1 -3.4196 6.3889 -2.2083 46 1 -3.0567 4.9572 -3.2022 47 1 -1.1708 6.5665 -3.2377 48 1 -0.6932 5.0391 -2.4581 49 1 -1.5644 8.4798 -0.0690 50 1 -1.6793 8.5756 -1.8429 51 1 -2.8770 7.6337 -0.9228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269677108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:02 Heat of formation + Delta-G solvation = -28.648759 kcal Electronic energy + Delta-G solvation = -32976.321277 eV Core-core repulsion = 28876.232194 eV Total energy + Delta-G solvation = -4100.089083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90936 -40.20688 -38.29574 -37.24677 -34.67072 -33.41573 -32.50117 -31.96659 -31.10937 -30.63590 -29.41224 -27.36653 -26.49909 -25.06013 -24.33404 -22.90417 -22.82526 -21.91699 -21.13303 -20.23548 -18.48597 -18.08118 -17.48509 -17.03277 -16.10231 -16.00673 -15.97984 -15.44131 -15.32729 -14.72861 -14.39764 -14.24987 -14.11485 -13.86731 -13.70488 -13.30987 -13.21767 -13.06406 -12.82610 -12.64133 -12.33674 -12.27135 -12.18233 -11.90036 -11.74877 -11.42845 -11.37517 -11.15066 -11.02934 -10.89785 -10.77407 -10.69317 -10.26815 -10.17408 -10.04934 -10.00494 -9.94343 -9.71388 -9.58312 -9.16466 -8.72087 -8.54947 -8.36059 -6.77979 -5.67921 -2.93756 0.77993 1.30137 3.06114 3.07290 3.46004 3.49219 3.52772 3.54306 4.05871 4.19271 4.66140 4.81804 4.91735 4.92757 4.95669 5.02005 5.05735 5.26413 5.31245 5.31977 5.36645 5.39031 5.48421 5.55277 5.59530 5.67362 5.71295 5.72480 5.80672 5.84687 5.87329 5.96264 6.04477 6.12309 6.14403 6.21674 6.24107 6.25871 6.33497 6.36375 6.49512 6.58297 6.59671 6.67246 6.78953 6.96555 7.16872 7.20390 7.67829 7.79017 8.04886 8.51422 8.65058 9.62711 10.21885 10.57457 11.54977 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006599 B = 0.005600 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4242.068778 B = 4998.411908 C = 7329.844450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.309 6.309 3 C 0.319 3.681 4 C -0.174 4.174 5 C -0.049 4.049 6 C -0.151 4.151 7 C 0.133 3.867 8 C 0.580 3.420 9 O -0.525 6.525 10 N -0.687 5.687 11 C 0.180 3.820 12 C 0.139 3.861 13 N -0.724 5.724 14 C -0.229 4.229 15 H 0.067 0.933 16 C -0.016 4.016 17 N -0.935 5.935 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.288 1.288 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.109 4.109 26 C -0.099 4.099 27 H 0.090 0.910 28 C -0.148 4.148 29 N -0.512 5.512 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.404 0.596 37 H 0.047 0.953 38 H 0.023 0.977 39 H 0.382 0.618 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -4.517 -17.032 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.216 6.216 3 C 0.138 3.862 4 C -0.195 4.195 5 C -0.075 4.075 6 C -0.172 4.172 7 C -0.005 4.005 8 C 0.364 3.636 9 O -0.401 6.401 10 N -0.337 5.337 11 C 0.095 3.905 12 C 0.011 3.989 13 N -0.369 5.369 14 C -0.360 4.360 15 H 0.085 0.915 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.215 1.215 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.147 4.147 26 C -0.119 4.119 27 H 0.108 0.892 28 C -0.205 4.205 29 N -0.238 5.238 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.240 0.760 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.216 0.784 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.364 -3.931 -16.866 17.372 hybrid contribution 0.654 -0.458 1.156 1.405 sum 2.018 -4.388 -15.710 16.436 Atomic orbital electron populations 1.22907 0.76953 1.02977 1.02957 1.86209 1.23171 1.24267 1.87960 1.19741 0.89356 0.84500 0.92602 1.21215 0.92001 0.99711 1.06589 1.21395 1.00712 0.90911 0.94448 1.21978 0.93239 1.00751 1.01251 1.20972 0.92320 0.90387 0.96784 1.17611 0.82379 0.86985 0.76583 1.90707 1.74005 1.25570 1.49797 1.45715 1.05107 1.10489 1.72374 1.20596 0.89462 0.84992 0.95491 1.21153 0.99540 0.92737 0.85433 1.42234 1.78308 1.13077 1.03254 1.19176 1.34590 0.96886 0.85363 0.91488 1.24664 1.02612 0.96072 0.97765 1.69645 1.53211 1.05797 1.29774 0.86310 0.78392 0.77274 0.84510 1.21389 1.21848 1.21467 1.21818 0.94518 1.01531 0.98052 1.21555 1.00939 0.98387 0.94828 1.21571 0.96977 0.99556 0.97550 1.21496 0.96131 0.99813 0.97245 1.21451 1.01710 0.95068 0.93653 0.89183 1.21959 0.99801 0.97033 1.01726 1.67158 1.40924 0.98215 1.17517 0.88714 0.91476 0.92386 0.83922 0.83583 0.83264 0.76036 0.93503 0.95921 0.78422 0.93783 0.90289 0.90215 0.92004 0.92311 0.91717 0.92708 0.92524 0.92369 0.91973 0.93137 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.21 10.47 -18.68 -0.20 -4.40 16 3 C 0.32 4.69 7.49 -17.13 -0.13 4.56 16 4 C -0.17 -2.13 10.05 -39.16 -0.39 -2.52 16 5 C -0.05 -0.57 10.16 -39.35 -0.40 -0.97 16 6 C -0.15 -2.21 9.63 -39.05 -0.38 -2.59 16 7 C 0.13 2.25 6.75 -83.02 -0.56 1.69 16 8 C 0.58 10.78 7.22 -12.19 -0.09 10.69 16 9 O -0.52 -10.76 12.61 5.35 0.07 -10.69 16 10 N -0.69 -11.68 3.56 -48.44 -0.17 -11.85 16 11 C 0.18 3.01 0.09 -131.82 -0.01 2.99 16 12 C 0.14 2.97 4.27 -4.04 -0.02 2.95 16 13 N -0.72 -18.58 5.18 -59.90 -0.31 -18.89 16 14 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 17 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 18 Si 0.90 23.19 29.55 -169.99 -5.02 18.17 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 C -0.12 -1.82 4.40 -26.73 -0.12 -1.94 16 23 C -0.12 -1.43 5.75 -26.73 -0.15 -1.59 16 24 C -0.12 -1.31 5.65 -26.73 -0.15 -1.46 16 25 C -0.11 -1.35 5.29 -26.73 -0.14 -1.49 16 26 C -0.10 -1.45 2.10 -90.62 -0.19 -1.64 16 27 H 0.09 1.52 6.28 -51.93 -0.33 1.20 16 28 C -0.15 -1.93 8.15 37.16 0.30 -1.62 16 29 N -0.51 -8.26 8.40 -9.87 -0.08 -8.34 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.15 2.10 7.63 -52.49 -0.40 1.70 16 36 H 0.40 6.50 6.54 -40.82 -0.27 6.24 16 37 H 0.05 1.11 6.25 -51.92 -0.32 0.79 16 38 H 0.02 0.49 6.74 -51.93 -0.35 0.14 16 39 H 0.38 10.17 6.47 -40.82 -0.26 9.91 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 1.38 7.11 -51.93 -0.37 1.01 16 42 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.71 6.78 -51.93 -0.35 0.35 16 45 H 0.06 0.68 6.43 -51.92 -0.33 0.35 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.77 7.60 -51.93 -0.39 0.37 16 49 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 LS Contribution 391.80 15.07 5.90 5.90 Total: -1.00 -33.20 391.80 -8.36 -41.56 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -7.65 Total: 15.13 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.62 Total: 1.23 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.16 Total: -66.91 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.13 Total: -15.10 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.20 -8.36 -41.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269677108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.913 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds