Wall clock time and date at job start Wed Apr 1 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35659 * 117.00538 * 2 1 4 4 C 1.39286 * 119.62170 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30484 * 180.02562 * 4 3 2 6 6 C 1.38776 * 118.56292 * 359.97438 * 5 4 3 7 7 C 1.39128 * 119.18550 * 359.97438 * 6 5 4 8 8 C 1.48156 * 119.69032 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99764 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99936 * 174.66410 * 10 8 7 12 12 C 1.52995 * 109.47499 * 303.94119 * 11 10 8 13 13 N 1.46503 * 109.47207 * 305.52653 * 12 11 10 14 14 C 1.36939 * 119.99909 * 175.03606 * 13 12 11 15 15 H 1.07999 * 119.99623 * 359.97438 * 14 13 12 16 16 C 1.38814 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99511 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00014 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47193 * 60.00090 * 18 16 14 20 20 H 1.48499 * 109.47188 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47184 * 300.00205 * 18 16 14 22 22 C 1.53002 * 109.46872 * 183.94420 * 11 10 8 23 23 C 1.53004 * 109.47012 * 300.00109 * 22 11 10 24 24 C 1.53000 * 109.47467 * 300.00343 * 23 22 11 25 25 C 1.52996 * 109.47153 * 59.99543 * 24 23 22 26 26 C 1.52998 * 109.47622 * 300.00574 * 25 24 23 27 27 H 1.09000 * 109.47542 * 179.97438 * 26 25 24 28 28 C 1.53006 * 109.46973 * 300.00165 * 26 25 24 29 29 N 1.31907 * 119.61454 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.47597 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47043 * 299.99829 * 1 2 3 32 32 H 1.08997 * 109.47047 * 59.99828 * 1 2 3 33 33 H 1.07998 * 120.34678 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.71404 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.41231 * 180.02562 * 6 5 4 36 36 H 0.96993 * 119.99696 * 354.67193 * 10 8 7 37 37 H 1.09007 * 109.46752 * 65.52289 * 12 11 10 38 38 H 1.09001 * 109.47375 * 185.52016 * 12 11 10 39 39 H 0.96993 * 119.99788 * 355.03373 * 13 12 11 40 40 H 0.97005 * 119.99827 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.47281 * 60.00315 * 22 11 10 42 42 H 1.08996 * 109.47053 * 180.02562 * 22 11 10 43 43 H 1.09000 * 109.47226 * 180.02562 * 23 22 11 44 44 H 1.08996 * 109.47055 * 60.00193 * 23 22 11 45 45 H 1.09010 * 109.46770 * 299.99958 * 24 23 22 46 46 H 1.08993 * 109.47654 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.47597 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.47119 * 60.00809 * 25 24 23 49 49 H 1.09001 * 109.46973 * 179.97438 * 28 26 25 50 50 H 1.08998 * 109.46782 * 299.99703 * 28 26 25 51 51 H 1.09000 * 109.47369 * 59.99426 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 -0.0005 5 6 4.0577 2.5082 0.0000 6 6 3.2667 3.6485 0.0005 7 6 1.8820 3.5136 0.0000 8 6 1.0268 4.7234 0.0011 9 8 1.5355 5.8270 0.0020 10 7 -0.3153 4.6001 0.0011 11 6 -1.1603 5.7909 0.1202 12 6 -0.7864 6.5567 1.3908 13 7 -0.8630 5.6564 2.5440 14 6 -0.4723 6.0939 3.7814 15 1 -0.1073 7.1025 3.9070 16 6 -0.5454 5.2410 4.8742 17 7 -0.9898 4.0117 4.7208 18 14 -0.0131 5.8380 6.5622 19 1 -0.8440 7.0028 6.9600 20 1 -0.1870 4.7444 7.5516 21 1 1.4153 6.2414 6.5168 22 6 -2.6291 5.3687 0.1928 23 6 -3.0031 4.6029 -1.0779 24 6 -2.7908 5.5028 -2.2969 25 6 -1.3220 5.9250 -2.3695 26 6 -0.9480 6.6908 -1.0989 27 1 0.0985 6.9912 -1.1504 28 6 -1.8306 7.9344 -0.9745 29 7 1.3192 2.3102 0.0005 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 4.0240 0.3661 -0.0005 34 1 5.1350 2.5840 -0.0008 35 1 3.7204 4.6286 0.0005 36 1 -0.7216 3.7229 -0.0777 37 1 0.2291 6.9418 1.2973 38 1 -1.4783 7.3871 1.5315 39 1 -1.1906 4.7504 2.4310 40 1 -1.0413 3.4157 5.4845 41 1 -2.7804 4.7276 1.0612 42 1 -3.2579 6.2547 0.2810 43 1 -4.0496 4.3025 -1.0264 44 1 -2.3744 3.7170 -1.1664 45 1 -3.4196 6.3889 -2.2083 46 1 -3.0567 4.9572 -3.2022 47 1 -1.1708 6.5665 -3.2377 48 1 -0.6932 5.0391 -2.4581 49 1 -1.5644 8.4798 -0.0690 50 1 -1.6793 8.5756 -1.8429 51 1 -2.8770 7.6337 -0.9228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269677108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:01 Heat of formation + Delta-G solvation = -51.618487 kcal Electronic energy + Delta-G solvation = -32977.317320 eV Core-core repulsion = 28876.232194 eV Total energy + Delta-G solvation = -4101.085126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15449 -41.38108 -39.48737 -38.43054 -36.47209 -34.90433 -33.80966 -33.15666 -32.73230 -31.84575 -30.89907 -28.37628 -27.82992 -26.69806 -25.46475 -24.72135 -23.90932 -23.07203 -22.45020 -21.56733 -19.65683 -19.51783 -19.05833 -18.57983 -17.27783 -17.07322 -17.02395 -16.90382 -16.62462 -16.24887 -16.08267 -15.47652 -15.36398 -15.22862 -15.02916 -14.68894 -14.61622 -14.33312 -14.15419 -13.96224 -13.74168 -13.59158 -13.23759 -13.12968 -12.93257 -12.82959 -12.70334 -12.66806 -12.46821 -12.30030 -12.15230 -12.14967 -11.96684 -11.83096 -11.54082 -11.20917 -11.12062 -11.00078 -10.92052 -10.87822 -10.40573 -9.86768 -9.57839 -8.94142 -7.95140 -5.21303 -0.36769 0.24407 1.41353 1.44608 1.50501 1.76715 2.05017 2.18707 2.53747 2.83889 3.02296 3.37611 3.63052 3.79570 3.81152 3.89828 3.96051 4.03446 4.08061 4.22051 4.25878 4.35840 4.42726 4.43068 4.46260 4.47672 4.53635 4.55342 4.68806 4.77859 4.78525 4.83903 4.91226 4.93186 4.99102 5.09832 5.11905 5.14045 5.17984 5.24100 5.25913 5.34144 5.39395 5.42981 5.45705 5.50588 5.57932 5.76142 6.11839 6.26428 6.46964 6.73290 7.25195 7.33591 8.09740 8.36615 9.27374 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006599 B = 0.005600 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4242.068778 B = 4998.411908 C = 7329.844450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C 0.298 3.702 4 C -0.162 4.162 5 C -0.036 4.036 6 C -0.159 4.159 7 C 0.097 3.903 8 C 0.571 3.429 9 O -0.556 6.556 10 N -0.681 5.681 11 C 0.185 3.815 12 C 0.143 3.857 13 N -0.729 5.729 14 C -0.241 4.241 15 H 0.063 0.937 16 C -0.070 4.070 17 N -0.963 5.963 18 Si 0.967 3.033 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.285 1.285 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.103 4.103 26 C -0.094 4.094 27 H 0.062 0.938 28 C -0.144 4.144 29 N -0.527 5.527 30 H 0.127 0.873 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.178 0.822 34 H 0.192 0.808 35 H 0.148 0.852 36 H 0.407 0.593 37 H 0.019 0.981 38 H 0.026 0.974 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.071 0.929 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -5.322 -18.386 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.219 6.219 3 C 0.116 3.884 4 C -0.183 4.183 5 C -0.061 4.061 6 C -0.181 4.181 7 C -0.039 4.039 8 C 0.357 3.643 9 O -0.434 6.434 10 N -0.331 5.331 11 C 0.099 3.901 12 C 0.015 3.985 13 N -0.372 5.372 14 C -0.374 4.374 15 H 0.081 0.919 16 C -0.263 4.263 17 N -0.614 5.614 18 Si 0.797 3.203 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.212 1.212 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.141 4.141 26 C -0.114 4.114 27 H 0.081 0.919 28 C -0.202 4.202 29 N -0.254 5.254 30 H 0.145 0.855 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.195 0.805 34 H 0.209 0.791 35 H 0.165 0.835 36 H 0.243 0.757 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.208 0.792 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.090 0.910 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.512 -4.717 -18.246 18.906 hybrid contribution 0.661 -0.231 1.568 1.717 sum 2.173 -4.948 -16.678 17.532 Atomic orbital electron populations 1.23038 0.76125 1.04758 1.01960 1.86212 1.24044 1.23709 1.87955 1.20218 0.90612 0.84373 0.93163 1.21700 0.91163 1.01278 1.04131 1.21874 1.02558 0.89397 0.92292 1.22176 0.92691 1.02049 1.01149 1.20871 0.93119 0.90125 0.99819 1.18038 0.82898 0.87432 0.75981 1.90674 1.74558 1.26796 1.51393 1.45707 1.04916 1.10693 1.71741 1.20562 0.90447 0.84969 0.94137 1.21194 0.97976 0.92825 0.86482 1.42310 1.77964 1.13252 1.03640 1.19496 1.34165 0.96837 0.86858 0.91860 1.25427 1.03254 0.96337 1.01263 1.69799 1.54398 1.06729 1.30427 0.85303 0.77986 0.76961 0.80082 1.20274 1.21770 1.21182 1.21755 0.93202 1.01623 0.98760 1.21530 1.01932 0.98065 0.93559 1.21553 0.95751 0.99972 0.97693 1.21454 0.97127 0.99260 0.96244 1.21369 1.00616 0.95596 0.93783 0.91928 1.21940 1.00106 0.96322 1.01797 1.67023 1.41771 0.98398 1.18196 0.85537 0.93937 0.91910 0.80468 0.79132 0.83466 0.75687 0.96252 0.95672 0.79247 0.94202 0.93287 0.89532 0.90125 0.92585 0.90532 0.90461 0.90806 0.93565 0.93877 0.90998 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.38 113.37 1.18 1.99 16 2 O -0.31 -8.23 10.47 -89.75 -0.94 -9.17 16 3 C 0.30 8.58 7.49 84.93 0.64 9.22 16 4 C -0.16 -3.60 10.05 22.54 0.23 -3.37 16 5 C -0.04 -0.77 10.16 22.42 0.23 -0.54 16 6 C -0.16 -4.69 9.63 22.61 0.22 -4.47 16 7 C 0.10 3.42 6.75 41.84 0.28 3.70 16 8 C 0.57 22.52 7.22 86.88 0.63 23.14 16 9 O -0.56 -24.36 12.61 -3.77 -0.05 -24.41 16 10 N -0.68 -24.43 3.56 -425.47 -1.51 -25.95 16 11 C 0.18 6.39 0.09 3.60 0.00 6.39 16 12 C 0.14 6.40 4.27 86.38 0.37 6.77 16 13 N -0.73 -39.11 5.18 -343.44 -1.78 -40.89 16 14 C -0.24 -14.38 9.99 84.03 0.84 -13.54 16 15 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 17 N -0.96 -60.23 13.06 21.65 0.28 -59.95 16 18 Si 0.97 48.40 29.55 68.60 2.03 50.43 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 22 C -0.12 -3.50 4.40 30.60 0.13 -3.37 16 23 C -0.11 -2.56 5.75 30.60 0.18 -2.38 16 24 C -0.11 -2.16 5.65 30.59 0.17 -1.99 16 25 C -0.10 -2.42 5.29 30.59 0.16 -2.26 16 26 C -0.09 -2.77 2.10 -10.79 -0.02 -2.79 16 27 H 0.06 2.21 6.28 -2.39 -0.01 2.20 16 28 C -0.14 -3.65 8.15 71.98 0.59 -3.06 16 29 N -0.53 -17.48 8.40 -298.20 -2.50 -19.98 16 30 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.15 4.29 7.63 -2.91 -0.02 4.27 16 36 H 0.41 13.86 6.54 -92.71 -0.61 13.26 16 37 H 0.02 0.99 6.25 -2.38 -0.01 0.97 16 38 H 0.03 1.13 6.74 -2.39 -0.02 1.11 16 39 H 0.37 20.97 6.47 -92.71 -0.60 20.37 16 40 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 41 H 0.05 1.78 7.11 -2.39 -0.02 1.76 16 42 H 0.09 2.47 6.43 -2.39 -0.02 2.46 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 1.30 6.78 -2.39 -0.02 1.29 16 45 H 0.08 1.34 6.43 -2.38 -0.02 1.33 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 49 H 0.04 1.24 6.56 -2.39 -0.02 1.22 16 50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.07 1.64 4.81 -2.39 -0.01 1.63 16 Total: -1.00 -75.31 391.80 1.56 -73.75 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: -0.24 Total: 46.47 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.28 Total: 9.69 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -5.52 Total: -146.76 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.99 Total: -33.58 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -75.31 1.56 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269677108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.128 kcal (2) G-P(sol) polarization free energy of solvation -75.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds