Wall clock time and date at job start Wed Apr 1 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47175 * 2 1 4 4 O 1.42896 * 109.47485 * 120.00117 * 2 1 3 5 5 C 1.35668 * 117.00295 * 152.60825 * 4 2 1 6 6 C 1.39289 * 119.61479 * 183.33458 * 5 4 2 7 7 C 1.38333 * 119.29965 * 179.97438 * 6 5 4 8 8 C 1.38779 * 118.56159 * 0.02562 * 7 6 5 9 9 C 1.39128 * 119.19115 * 359.97438 * 8 7 6 10 10 C 1.48150 * 119.69263 * 179.97438 * 9 8 7 11 11 O 1.21520 * 119.99630 * 4.96588 * 10 9 8 12 12 N 1.34775 * 120.00126 * 184.97156 * 10 9 8 13 13 C 1.46496 * 119.99913 * 184.88804 * 12 10 9 14 14 C 1.52998 * 109.47039 * 97.44481 * 13 12 10 15 15 N 1.46504 * 110.54063 * 302.99387 * 14 13 12 16 16 C 1.36941 * 119.99976 * 64.67084 * 15 14 13 17 17 H 1.08001 * 119.99596 * 7.53785 * 16 15 14 18 18 C 1.38804 * 119.99806 * 187.54135 * 16 15 14 19 19 N 1.31617 * 120.00512 * 358.18643 * 18 16 15 20 20 Si 1.86810 * 119.99858 * 178.18568 * 18 16 15 21 21 H 1.48497 * 109.46749 * 358.12360 * 20 18 16 22 22 H 1.48499 * 109.46874 * 118.12083 * 20 18 16 23 23 H 1.48498 * 109.47183 * 238.12334 * 20 18 16 24 24 C 1.54899 * 110.48812 * 65.60618 * 14 13 12 25 25 C 1.54886 * 102.74683 * 156.61954 * 24 14 13 26 26 C 1.54259 * 104.19863 * 322.05665 * 25 24 14 27 27 C 1.53875 * 106.59839 * 23.61350 * 26 25 24 28 28 N 1.31903 * 119.61698 * 3.59054 * 5 4 2 29 29 H 1.08997 * 109.47481 * 299.99793 * 1 2 3 30 30 H 1.09004 * 109.47216 * 60.00169 * 1 2 3 31 31 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47481 * 240.00207 * 2 1 3 33 33 H 1.09001 * 109.47647 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47438 * 300.00452 * 3 2 1 35 35 H 1.09001 * 109.47120 * 60.00079 * 3 2 1 36 36 H 1.07997 * 120.34954 * 0.02562 * 6 5 4 37 37 H 1.08004 * 120.71764 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.40695 * 180.02562 * 8 7 6 39 39 H 0.96996 * 119.99681 * 4.88825 * 12 10 9 40 40 H 1.08996 * 109.47261 * 337.44727 * 13 12 10 41 41 H 1.09004 * 109.46891 * 217.43991 * 13 12 10 42 42 H 0.96998 * 119.99660 * 244.66939 * 15 14 13 43 43 H 0.96998 * 120.00231 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.75336 * 274.93705 * 24 14 13 45 45 H 1.08998 * 110.75230 * 38.30440 * 24 14 13 46 46 H 1.08997 * 110.48216 * 203.37573 * 25 24 14 47 47 H 1.09007 * 110.48454 * 80.73916 * 25 24 14 48 48 H 1.08997 * 110.03694 * 264.32424 * 26 25 24 49 49 H 1.09007 * 110.03090 * 142.89157 * 26 25 24 50 50 H 1.09006 * 110.03065 * 240.71175 * 27 26 25 51 51 H 1.09002 * 110.03621 * 119.28394 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2236 -1.2667 1.0817 6 6 3.7102 -1.9975 2.1630 7 6 4.9519 -2.5999 2.0691 8 6 5.6733 -2.4531 0.8927 9 6 5.1283 -1.7095 -0.1492 10 6 5.8891 -1.5450 -1.4098 11 8 6.9420 -2.1316 -1.5649 12 7 5.4135 -0.7448 -2.3844 13 6 6.1092 -0.6651 -3.6712 14 6 5.4276 -1.5941 -4.6778 15 7 5.3993 -2.9685 -4.1715 16 6 4.6770 -3.2695 -3.0477 17 1 4.0321 -2.5248 -2.6048 18 6 4.7737 -4.5314 -2.4778 19 7 5.5318 -5.4501 -3.0377 20 14 3.8276 -4.9260 -0.9160 21 1 3.0910 -3.7181 -0.4651 22 1 2.8629 -6.0223 -1.1854 23 1 4.7770 -5.3512 0.1437 24 6 3.9921 -1.1001 -4.9857 25 6 3.7076 -1.7217 -6.3756 26 6 5.0546 -1.6166 -7.1200 27 6 6.1482 -1.5355 -6.0406 28 7 3.9346 -1.1404 -0.0221 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1240 -2.0934 3.0649 37 1 5.3516 -3.1715 2.8937 38 1 6.6457 -2.9111 0.7869 39 1 4.6107 -0.2217 -2.2338 40 1 7.1479 -0.9688 -3.5422 41 1 6.0734 0.3598 -4.0407 42 1 5.8922 -3.6653 -4.6323 43 1 5.5997 -6.3319 -2.6393 44 1 3.2872 -1.4746 -4.2434 45 1 3.9605 -0.0118 -5.0355 46 1 2.9379 -1.1530 -6.8974 47 1 3.4087 -2.7650 -6.2730 48 1 5.0713 -0.7180 -7.7367 49 1 5.2078 -2.4992 -7.7411 50 1 6.6956 -0.5974 -6.1334 51 1 6.8321 -2.3786 -6.1378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270805811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:47 Heat of formation + Delta-G solvation = -22.424392 kcal Electronic energy + Delta-G solvation = -33420.765199 eV Core-core repulsion = 29320.946025 eV Total energy + Delta-G solvation = -4099.819175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58001 -39.18687 -38.14332 -37.20313 -33.86900 -33.20699 -33.00035 -32.28411 -30.42181 -29.89152 -28.34245 -27.76275 -27.28894 -24.98369 -23.72734 -23.36854 -22.83074 -21.06809 -20.35152 -19.77018 -18.43375 -18.33662 -17.26557 -16.90079 -15.90718 -15.78048 -15.56652 -15.25191 -14.91310 -14.66182 -14.21321 -14.18075 -14.06523 -13.77253 -13.42539 -13.22769 -13.10939 -12.81314 -12.65625 -12.35133 -12.33748 -12.26676 -11.89325 -11.79135 -11.67777 -11.26424 -10.96035 -10.88428 -10.80648 -10.64348 -10.56460 -10.48333 -10.39613 -10.12437 -9.93689 -9.85019 -9.72030 -9.69286 -9.57089 -8.97270 -8.74024 -8.24278 -8.00627 -6.78123 -5.66796 -2.88309 1.08073 1.54618 3.12448 3.41672 3.48444 3.48998 3.52494 3.86770 4.43323 4.52147 4.65378 4.87074 4.97910 5.09323 5.22284 5.23022 5.26309 5.29309 5.32226 5.37689 5.47554 5.50082 5.65985 5.68599 5.77596 5.80153 5.81796 5.88519 5.96276 6.03482 6.06406 6.11884 6.14899 6.17346 6.22148 6.24803 6.37937 6.39836 6.45119 6.51667 6.58883 6.62422 6.84893 6.89403 6.90732 7.12605 7.37085 7.44340 7.84394 7.94835 8.40470 8.53656 9.16372 9.64321 10.24621 10.59608 11.56719 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.005304 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.909025 B = 5277.603428 C = 6350.230694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.167 4.167 4 O -0.305 6.305 5 C 0.322 3.678 6 C -0.184 4.184 7 C -0.052 4.052 8 C -0.157 4.157 9 C 0.147 3.853 10 C 0.597 3.403 11 O -0.511 6.511 12 N -0.707 5.707 13 C 0.112 3.888 14 C 0.184 3.816 15 N -0.702 5.702 16 C -0.216 4.216 17 H 0.076 0.924 18 C -0.002 4.002 19 N -0.922 5.922 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.300 1.300 23 H -0.289 1.289 24 C -0.130 4.130 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.121 4.121 28 N -0.512 5.512 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.396 0.604 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.250 0.750 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 13.542 3.807 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 C -0.225 4.225 4 O -0.213 6.213 5 C 0.141 3.859 6 C -0.205 4.205 7 C -0.077 4.077 8 C -0.178 4.178 9 C 0.010 3.990 10 C 0.382 3.618 11 O -0.384 6.384 12 N -0.356 5.356 13 C -0.014 4.014 14 C 0.091 3.909 15 N -0.343 5.343 16 C -0.347 4.347 17 H 0.094 0.906 18 C -0.199 4.199 19 N -0.570 5.570 20 Si 0.707 3.293 21 H -0.200 1.200 22 H -0.228 1.228 23 H -0.216 1.216 24 C -0.170 4.170 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.159 4.159 28 N -0.238 5.238 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.229 0.771 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.217 0.783 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.027 13.603 3.332 14.879 hybrid contribution -0.611 -1.005 1.358 1.797 sum -5.638 12.598 4.690 14.577 Atomic orbital electron populations 1.21880 0.93086 1.02986 1.02636 1.22307 0.94248 0.92705 0.88232 1.22215 1.02391 0.95650 1.02196 1.86245 1.29410 1.66535 1.39092 1.19631 0.85793 0.90603 0.89893 1.21127 0.97936 1.01992 0.99474 1.21372 0.92882 0.95808 0.97644 1.21987 1.02730 1.00063 0.93039 1.21085 0.89572 0.93474 0.94900 1.17160 0.84282 0.78671 0.81721 1.90754 1.23008 1.45094 1.79554 1.45253 1.30380 1.46493 1.13496 1.22039 0.98126 0.97673 0.83577 1.20776 0.92327 0.87548 0.90259 1.42264 1.58825 1.02422 1.30742 1.19209 1.17026 0.96231 1.02253 0.90627 1.24582 0.99862 0.96936 0.98472 1.69637 1.42736 1.04081 1.40590 0.86595 0.79384 0.78174 0.85175 1.20047 1.22797 1.21609 1.22894 0.99758 0.97533 0.96805 1.22190 0.95833 1.01259 0.95794 1.22035 0.95606 1.00306 0.97484 1.22286 0.97759 1.01228 0.94635 1.67133 1.07842 1.24637 1.24232 0.91923 0.90536 0.91845 0.89217 0.91712 0.91228 0.92378 0.84309 0.83935 0.83446 0.77086 0.90189 0.92713 0.78284 0.93941 0.91161 0.93392 0.93456 0.91350 0.92993 0.92599 0.92216 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.56 37.15 0.36 -1.21 16 2 C 0.08 1.07 3.03 -26.74 -0.08 0.99 16 3 C -0.17 -1.84 9.49 37.16 0.35 -1.48 16 4 O -0.30 -4.68 9.77 -18.70 -0.18 -4.86 16 5 C 0.32 5.47 7.42 -17.13 -0.13 5.34 16 6 C -0.18 -2.83 10.05 -39.16 -0.39 -3.22 16 7 C -0.05 -0.80 10.16 -39.35 -0.40 -1.20 16 8 C -0.16 -2.95 8.52 -39.05 -0.33 -3.28 16 9 C 0.15 2.93 5.32 -83.03 -0.44 2.49 16 10 C 0.60 12.82 4.68 -12.19 -0.06 12.76 16 11 O -0.51 -12.78 15.41 5.35 0.08 -12.70 16 12 N -0.71 -13.14 3.66 -61.16 -0.22 -13.36 16 13 C 0.11 1.99 5.24 -4.04 -0.02 1.97 16 14 C 0.18 3.43 0.81 -130.15 -0.11 3.32 16 15 N -0.70 -16.76 5.13 -45.70 -0.23 -17.00 16 16 C -0.22 -5.63 5.58 -15.06 -0.08 -5.71 16 17 H 0.08 1.94 5.36 -52.49 -0.28 1.66 16 18 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 19 N -0.92 -28.23 13.07 55.49 0.73 -27.50 16 20 Si 0.87 22.91 27.18 -169.99 -4.62 18.29 16 21 H -0.28 -6.91 7.04 56.52 0.40 -6.52 16 22 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 24 C -0.13 -2.21 5.65 -24.73 -0.14 -2.35 16 25 C -0.11 -1.82 6.79 -25.08 -0.17 -1.99 16 26 C -0.12 -1.72 6.80 -25.62 -0.17 -1.90 16 27 C -0.12 -1.94 6.06 -25.61 -0.16 -2.10 16 28 N -0.51 -9.32 7.72 -9.87 -0.08 -9.40 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.35 7.15 -51.93 -0.37 0.98 16 33 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.15 2.81 7.64 -52.48 -0.40 2.41 16 39 H 0.40 6.64 8.19 -40.82 -0.33 6.31 16 40 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 41 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 42 H 0.38 10.18 7.48 -40.82 -0.31 9.87 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 1.37 6.76 -51.93 -0.35 1.01 16 45 H 0.05 0.70 8.03 -51.93 -0.42 0.28 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 51 H 0.07 1.16 7.72 -51.93 -0.40 0.75 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -32.57 400.95 -8.82 -41.39 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -8.27 Total: 16.80 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.07 Total: 2.29 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: 0.19 Total: -67.25 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.10 Total: -17.56 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.62 Total: 18.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.57 -8.82 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270805811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.969 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds