Wall clock time and date at job start Wed Apr 1 2020 04:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47175 * 2 1 4 4 O 1.42896 * 109.47485 * 120.00117 * 2 1 3 5 5 C 1.35668 * 117.00295 * 152.60825 * 4 2 1 6 6 C 1.39289 * 119.61479 * 183.33458 * 5 4 2 7 7 C 1.38333 * 119.29965 * 179.97438 * 6 5 4 8 8 C 1.38779 * 118.56159 * 0.02562 * 7 6 5 9 9 C 1.39128 * 119.19115 * 359.97438 * 8 7 6 10 10 C 1.48150 * 119.69263 * 179.97438 * 9 8 7 11 11 O 1.21520 * 119.99630 * 4.96588 * 10 9 8 12 12 N 1.34775 * 120.00126 * 184.97156 * 10 9 8 13 13 C 1.46496 * 119.99913 * 184.88804 * 12 10 9 14 14 C 1.52998 * 109.47039 * 97.44481 * 13 12 10 15 15 N 1.46504 * 110.54063 * 302.99387 * 14 13 12 16 16 C 1.36941 * 119.99976 * 64.67084 * 15 14 13 17 17 H 1.08001 * 119.99596 * 7.53785 * 16 15 14 18 18 C 1.38804 * 119.99806 * 187.54135 * 16 15 14 19 19 N 1.31617 * 120.00512 * 358.18643 * 18 16 15 20 20 Si 1.86810 * 119.99858 * 178.18568 * 18 16 15 21 21 H 1.48497 * 109.46749 * 358.12360 * 20 18 16 22 22 H 1.48499 * 109.46874 * 118.12083 * 20 18 16 23 23 H 1.48498 * 109.47183 * 238.12334 * 20 18 16 24 24 C 1.54899 * 110.48812 * 65.60618 * 14 13 12 25 25 C 1.54886 * 102.74683 * 156.61954 * 24 14 13 26 26 C 1.54259 * 104.19863 * 322.05665 * 25 24 14 27 27 C 1.53875 * 106.59839 * 23.61350 * 26 25 24 28 28 N 1.31903 * 119.61698 * 3.59054 * 5 4 2 29 29 H 1.08997 * 109.47481 * 299.99793 * 1 2 3 30 30 H 1.09004 * 109.47216 * 60.00169 * 1 2 3 31 31 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47481 * 240.00207 * 2 1 3 33 33 H 1.09001 * 109.47647 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47438 * 300.00452 * 3 2 1 35 35 H 1.09001 * 109.47120 * 60.00079 * 3 2 1 36 36 H 1.07997 * 120.34954 * 0.02562 * 6 5 4 37 37 H 1.08004 * 120.71764 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.40695 * 180.02562 * 8 7 6 39 39 H 0.96996 * 119.99681 * 4.88825 * 12 10 9 40 40 H 1.08996 * 109.47261 * 337.44727 * 13 12 10 41 41 H 1.09004 * 109.46891 * 217.43991 * 13 12 10 42 42 H 0.96998 * 119.99660 * 244.66939 * 15 14 13 43 43 H 0.96998 * 120.00231 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.75336 * 274.93705 * 24 14 13 45 45 H 1.08998 * 110.75230 * 38.30440 * 24 14 13 46 46 H 1.08997 * 110.48216 * 203.37573 * 25 24 14 47 47 H 1.09007 * 110.48454 * 80.73916 * 25 24 14 48 48 H 1.08997 * 110.03694 * 264.32424 * 26 25 24 49 49 H 1.09007 * 110.03090 * 142.89157 * 26 25 24 50 50 H 1.09006 * 110.03065 * 240.71175 * 27 26 25 51 51 H 1.09002 * 110.03621 * 119.28394 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2236 -1.2667 1.0817 6 6 3.7102 -1.9975 2.1630 7 6 4.9519 -2.5999 2.0691 8 6 5.6733 -2.4531 0.8927 9 6 5.1283 -1.7095 -0.1492 10 6 5.8891 -1.5450 -1.4098 11 8 6.9420 -2.1316 -1.5649 12 7 5.4135 -0.7448 -2.3844 13 6 6.1092 -0.6651 -3.6712 14 6 5.4276 -1.5941 -4.6778 15 7 5.3993 -2.9685 -4.1715 16 6 4.6770 -3.2695 -3.0477 17 1 4.0321 -2.5248 -2.6048 18 6 4.7737 -4.5314 -2.4778 19 7 5.5318 -5.4501 -3.0377 20 14 3.8276 -4.9260 -0.9160 21 1 3.0910 -3.7181 -0.4651 22 1 2.8629 -6.0223 -1.1854 23 1 4.7770 -5.3512 0.1437 24 6 3.9921 -1.1001 -4.9857 25 6 3.7076 -1.7217 -6.3756 26 6 5.0546 -1.6166 -7.1200 27 6 6.1482 -1.5355 -6.0406 28 7 3.9346 -1.1404 -0.0221 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1240 -2.0934 3.0649 37 1 5.3516 -3.1715 2.8937 38 1 6.6457 -2.9111 0.7869 39 1 4.6107 -0.2217 -2.2338 40 1 7.1479 -0.9688 -3.5422 41 1 6.0734 0.3598 -4.0407 42 1 5.8922 -3.6653 -4.6323 43 1 5.5997 -6.3319 -2.6393 44 1 3.2872 -1.4746 -4.2434 45 1 3.9605 -0.0118 -5.0355 46 1 2.9379 -1.1530 -6.8974 47 1 3.4087 -2.7650 -6.2730 48 1 5.0713 -0.7180 -7.7367 49 1 5.2078 -2.4992 -7.7411 50 1 6.6956 -0.5974 -6.1334 51 1 6.8321 -2.3786 -6.1378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270805811.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:46 Heat of formation + Delta-G solvation = -45.790784 kcal Electronic energy + Delta-G solvation = -33421.778442 eV Core-core repulsion = 29320.946025 eV Total energy + Delta-G solvation = -4100.832417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92239 -40.69029 -39.47757 -38.65588 -35.48285 -34.92466 -34.23410 -33.61884 -32.17418 -31.30010 -29.85347 -29.24461 -28.13000 -26.43953 -25.50653 -24.87558 -24.18054 -22.16469 -21.81363 -21.14304 -19.99490 -19.70410 -18.92178 -18.58523 -17.35763 -17.07602 -16.84474 -16.67295 -16.45688 -16.04710 -15.97366 -15.53364 -15.36473 -15.25564 -15.04363 -14.70676 -14.53882 -14.12395 -13.94703 -13.84678 -13.34332 -13.25966 -13.16115 -13.13347 -13.05681 -12.92846 -12.72990 -12.35527 -12.21081 -12.15591 -11.87782 -11.85070 -11.73873 -11.65021 -11.57904 -11.51554 -11.24836 -11.13886 -10.96433 -10.76470 -10.51493 -9.73156 -9.53429 -8.77439 -7.84299 -5.02238 -0.30175 0.22900 1.30327 1.32818 1.39331 1.96183 1.97026 2.40490 2.56218 2.96787 3.12484 3.53335 3.84242 3.90225 3.91604 3.96680 4.01238 4.02303 4.03587 4.07189 4.21519 4.26802 4.30346 4.47738 4.58475 4.68577 4.72932 4.73684 4.80934 4.83840 4.87978 4.89442 4.93715 4.96648 4.99501 5.09865 5.13223 5.21022 5.22598 5.23938 5.30707 5.36935 5.38760 5.43365 5.58629 5.68374 5.74542 5.85418 6.19308 6.40808 6.55772 6.87908 7.46158 7.56335 8.26513 8.47681 9.42102 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.005304 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.909025 B = 5277.603428 C = 6350.230694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 C -0.159 4.159 4 O -0.306 6.306 5 C 0.309 3.691 6 C -0.175 4.175 7 C -0.046 4.046 8 C -0.177 4.177 9 C 0.121 3.879 10 C 0.590 3.410 11 O -0.557 6.557 12 N -0.695 5.695 13 C 0.111 3.889 14 C 0.169 3.831 15 N -0.714 5.714 16 C -0.171 4.171 17 H 0.082 0.918 18 C -0.069 4.069 19 N -0.968 5.968 20 Si 0.918 3.082 21 H -0.261 1.261 22 H -0.317 1.317 23 H -0.297 1.297 24 C -0.121 4.121 25 C -0.112 4.112 26 C -0.110 4.110 27 C -0.118 4.118 28 N -0.514 5.514 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.132 0.868 39 H 0.407 0.593 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.365 0.635 43 H 0.238 0.762 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.031 0.969 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 17.116 4.017 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 C -0.217 4.217 4 O -0.214 6.214 5 C 0.127 3.873 6 C -0.196 4.196 7 C -0.071 4.071 8 C -0.199 4.199 9 C -0.016 4.016 10 C 0.376 3.624 11 O -0.434 6.434 12 N -0.344 5.344 13 C -0.015 4.015 14 C 0.078 3.922 15 N -0.352 5.352 16 C -0.303 4.303 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.622 5.622 20 Si 0.752 3.248 21 H -0.185 1.185 22 H -0.247 1.247 23 H -0.225 1.225 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.156 4.156 28 N -0.241 5.241 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.150 0.850 39 H 0.242 0.758 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.197 0.803 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.111 0.889 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.049 17.281 3.529 18.994 hybrid contribution -0.059 -1.903 1.279 2.294 sum -7.108 15.378 4.808 17.610 Atomic orbital electron populations 1.21893 0.90963 1.02840 1.04377 1.22574 0.95891 0.93395 0.86573 1.22157 1.01281 0.94421 1.03799 1.86262 1.28451 1.66560 1.40089 1.20033 0.86272 0.90947 0.90051 1.21619 0.97734 1.00075 1.00134 1.21812 0.92594 0.95339 0.97365 1.22099 1.02829 1.00550 0.94435 1.20881 0.90534 0.95407 0.94770 1.17548 0.83893 0.78243 0.82727 1.90728 1.24930 1.47129 1.80631 1.45255 1.30430 1.45425 1.13319 1.22101 0.96434 1.00057 0.82881 1.21203 0.94320 0.84860 0.91779 1.42522 1.58021 1.04582 1.30045 1.19385 1.14579 0.95180 1.01200 0.90049 1.25068 1.02108 0.97832 1.01072 1.69771 1.46097 1.04071 1.42214 0.85835 0.78019 0.77628 0.83310 1.18537 1.24698 1.22501 1.22806 0.97019 0.99729 0.96450 1.22161 0.97526 0.99411 0.95867 1.22016 0.93872 1.01788 0.97067 1.22294 0.97916 1.02041 0.93349 1.67051 1.07207 1.24679 1.25178 0.90584 0.88393 0.92941 0.91601 0.93333 0.89107 0.91283 0.80674 0.80106 0.84956 0.75806 0.92689 0.87721 0.80331 0.95310 0.94009 0.89530 0.90556 0.95036 0.89458 0.93240 0.88938 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.56 71.98 0.69 -1.94 16 2 C 0.07 1.72 3.03 30.59 0.09 1.82 16 3 C -0.16 -3.07 9.49 71.98 0.68 -2.39 16 4 O -0.31 -8.71 9.77 -89.84 -0.88 -9.59 16 5 C 0.31 9.95 7.42 84.94 0.63 10.58 16 6 C -0.18 -4.90 10.05 22.55 0.23 -4.67 16 7 C -0.05 -1.35 10.16 22.42 0.23 -1.12 16 8 C -0.18 -6.72 8.52 22.61 0.19 -6.53 16 9 C 0.12 4.84 5.32 41.84 0.22 5.07 16 10 C 0.59 25.85 4.68 86.88 0.41 26.26 16 11 O -0.56 -29.13 15.41 -3.78 -0.06 -29.19 16 12 N -0.70 -25.37 3.66 -465.69 -1.71 -27.08 16 13 C 0.11 3.76 5.24 86.38 0.45 4.22 16 14 C 0.17 6.11 0.81 4.68 0.00 6.11 16 15 N -0.71 -34.94 5.13 -298.48 -1.53 -36.47 16 16 C -0.17 -9.14 5.58 84.03 0.47 -8.67 16 17 H 0.08 4.22 5.36 -2.91 -0.02 4.21 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 19 N -0.97 -62.59 13.07 21.65 0.28 -62.31 16 20 Si 0.92 49.00 27.18 68.60 1.86 50.86 16 21 H -0.26 -12.98 7.04 99.48 0.70 -12.28 16 22 H -0.32 -17.56 7.11 99.48 0.71 -16.85 16 23 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 24 C -0.12 -3.79 5.65 31.89 0.18 -3.61 16 25 C -0.11 -3.34 6.79 31.67 0.21 -3.13 16 26 C -0.11 -2.92 6.80 31.32 0.21 -2.71 16 27 C -0.12 -3.55 6.06 31.32 0.19 -3.36 16 28 N -0.51 -18.34 7.72 -298.20 -2.30 -20.64 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.91 7.15 -2.39 -0.02 1.89 16 33 H 0.05 1.09 7.95 -2.39 -0.02 1.08 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.13 5.31 7.64 -2.91 -0.02 5.29 16 39 H 0.41 13.06 8.19 -92.71 -0.76 12.30 16 40 H 0.05 2.18 7.16 -2.39 -0.02 2.16 16 41 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 42 H 0.37 20.33 7.48 -92.71 -0.69 19.64 16 43 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.04 1.55 6.76 -2.39 -0.02 1.54 16 45 H 0.09 2.09 8.03 -2.39 -0.02 2.07 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.09 2.19 7.84 -2.38 -0.02 2.18 16 51 H 0.04 1.54 7.72 -2.39 -0.02 1.52 16 Total: -1.00 -76.94 400.95 0.72 -76.23 By element: Atomic # 1 Polarization: 46.44 SS G_CDS: -0.51 Total: 45.92 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.56 Total: 12.26 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -5.26 Total: -146.50 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.94 Total: -38.78 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.86 Total: 50.86 kcal Total: -76.94 0.72 -76.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270805811.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.435 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds