Wall clock time and date at job start Wed Apr 1 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 O 1.42906 * 109.46850 * 119.99391 * 2 1 3 5 5 C 1.35434 * 116.99551 * 90.90982 * 4 2 1 6 6 N 1.32234 * 119.80229 * 4.63351 * 5 4 2 7 7 C 1.31878 * 121.79858 * 180.02562 * 6 5 4 8 8 C 1.38354 * 121.18812 * 359.97275 * 7 6 5 9 9 C 1.38340 * 119.45540 * 359.77136 * 8 7 6 10 10 C 1.39979 * 118.34942 * 0.47113 * 9 8 7 11 11 C 1.47533 * 120.59862 * 179.80696 * 10 9 8 12 12 O 1.21589 * 119.99884 * 189.37431 * 11 10 9 13 13 N 1.34777 * 119.99576 * 9.36680 * 11 10 9 14 14 C 1.47416 * 125.65180 * 6.63593 * 13 11 10 15 15 C 1.54912 * 104.83684 * 155.90584 * 14 13 11 16 16 C 1.55160 * 101.57769 * 37.00403 * 15 14 13 17 17 C 1.47027 * 125.64424 * 186.66899 * 13 11 10 18 18 H 1.08992 * 109.88364 * 300.60068 * 17 13 11 19 19 C 1.53002 * 109.87885 * 61.61318 * 17 13 11 20 20 N 1.46499 * 109.46985 * 305.89126 * 19 17 13 21 21 C 1.46506 * 119.99930 * 278.25443 * 20 19 17 22 22 C 1.36933 * 120.00089 * 98.25990 * 20 19 17 23 23 H 1.08001 * 119.99783 * 337.20873 * 22 20 19 24 24 C 1.38814 * 120.00119 * 157.48428 * 22 20 19 25 25 N 1.31617 * 119.99865 * 358.59297 * 24 22 20 26 26 Si 1.86800 * 119.99954 * 178.59315 * 24 22 20 27 27 H 1.48502 * 109.47165 * 64.98943 * 26 24 22 28 28 H 1.48500 * 109.47345 * 184.98958 * 26 24 22 29 29 H 1.48494 * 109.47308 * 304.99362 * 26 24 22 30 30 H 1.08998 * 109.47366 * 184.71977 * 1 2 3 31 31 H 1.08998 * 109.47261 * 304.72668 * 1 2 3 32 32 H 1.09006 * 109.46978 * 64.72917 * 1 2 3 33 33 H 1.08999 * 109.47544 * 239.99598 * 2 1 3 34 34 H 1.09003 * 109.47649 * 179.97438 * 3 2 1 35 35 H 1.09009 * 109.46943 * 299.99528 * 3 2 1 36 36 H 1.08994 * 109.47577 * 59.99532 * 3 2 1 37 37 H 1.08005 * 119.40740 * 179.97438 * 7 6 5 38 38 H 1.07998 * 120.27347 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.82423 * 180.25596 * 9 8 7 40 40 H 1.09004 * 110.36701 * 274.74314 * 14 13 11 41 41 H 1.09002 * 110.36870 * 37.06370 * 14 13 11 42 42 H 1.09000 * 111.00773 * 155.08241 * 15 14 13 43 43 H 1.09006 * 110.99984 * 278.93454 * 15 14 13 44 44 H 1.09005 * 110.71523 * 206.13585 * 16 15 14 45 45 H 1.08997 * 110.71742 * 82.86812 * 16 15 14 46 46 H 1.09005 * 109.47099 * 185.89371 * 19 17 13 47 47 H 1.09003 * 109.47238 * 65.89291 * 19 17 13 48 48 H 1.09001 * 109.46994 * 272.20557 * 21 20 19 49 49 H 1.08994 * 109.46909 * 32.20931 * 21 20 19 50 50 H 1.09003 * 109.46485 * 152.20898 * 21 20 19 51 51 H 0.97005 * 119.99568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2292 -2.0051 1.0602 6 7 2.0929 -2.6025 -0.1117 7 6 2.2996 -3.8964 -0.2603 8 6 2.6710 -4.6903 0.8103 9 6 2.8333 -4.1165 2.0586 10 6 2.6033 -2.7424 2.1935 11 6 2.7577 -2.0801 3.5028 12 8 2.3937 -0.9291 3.6485 13 7 3.3019 -2.7510 4.5372 14 6 3.9082 -4.0929 4.4674 15 6 4.8909 -4.1470 5.6638 16 6 4.1090 -3.3551 6.7450 17 6 3.3887 -2.2660 5.9225 18 1 3.9574 -1.3368 5.9550 19 6 1.9834 -2.0356 6.4820 20 7 1.2404 -1.1467 5.5853 21 6 1.4320 0.3034 5.6673 22 6 0.3669 -1.6713 4.6705 23 1 0.4774 -2.6946 4.3434 24 6 -0.6573 -0.8860 4.1593 25 7 -0.8056 0.3541 4.5744 26 14 -1.8250 -1.5894 2.8821 27 1 -2.6136 -2.6929 3.4869 28 1 -2.7455 -0.5230 2.4123 29 1 -1.0443 -2.1117 1.7320 30 1 -0.3634 -1.0241 0.0846 31 1 -0.3634 0.5854 0.8446 32 1 -0.3633 0.4387 -0.9294 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 2.1768 -4.3446 -1.2353 38 1 2.8369 -5.7484 0.6717 39 1 3.1267 -4.7146 2.9086 40 1 3.1420 -4.8613 4.5708 41 1 4.4470 -4.2174 3.5280 42 1 5.0638 -5.1753 5.9812 43 1 5.8308 -3.6517 5.4200 44 1 4.7937 -2.9056 7.4642 45 1 3.3875 -3.9988 7.2481 46 1 2.0557 -1.5784 7.4689 47 1 1.4628 -2.9900 6.5610 48 1 0.7469 0.7192 6.4062 49 1 2.4590 0.5181 5.9627 50 1 1.2325 0.7518 4.6940 51 1 -1.5216 0.9027 4.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275178358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:54 Heat of formation + Delta-G solvation = 49.352990 kcal Electronic energy + Delta-G solvation = -34428.969236 eV Core-core repulsion = 30332.262562 eV Total energy + Delta-G solvation = -4096.706674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58849 -39.24429 -37.77137 -36.42537 -34.98547 -32.86900 -32.68159 -31.22005 -30.74593 -29.70061 -28.93701 -26.91064 -25.61677 -25.27746 -24.27640 -23.42633 -22.40846 -20.95662 -20.64887 -20.50984 -18.67443 -17.78768 -16.81316 -16.69483 -16.24522 -15.79241 -15.27079 -14.98580 -14.76182 -14.53809 -14.08097 -13.68549 -13.55467 -13.48220 -13.25516 -13.06710 -12.81590 -12.73763 -12.46289 -12.26755 -11.96536 -11.90401 -11.78452 -11.69044 -11.62951 -11.40508 -11.11604 -10.84156 -10.72237 -10.64108 -10.47405 -10.40167 -10.31711 -10.23766 -9.78969 -9.71643 -9.56740 -9.53304 -9.37942 -8.53207 -8.28675 -8.02588 -7.68647 -6.18746 -5.39431 -2.79418 1.15339 1.55721 3.42675 3.48643 3.53132 3.54224 3.66127 3.80013 4.45720 4.50770 4.68835 4.75287 4.87833 5.03149 5.11768 5.22899 5.24679 5.32737 5.36355 5.38253 5.52575 5.56377 5.60815 5.70889 5.80172 5.82547 5.86293 5.87915 6.00197 6.05971 6.08153 6.12711 6.15259 6.20881 6.21894 6.29964 6.33393 6.44489 6.49600 6.61609 6.64566 6.73030 6.94029 7.24264 7.25512 7.75988 7.88946 7.95210 8.10536 8.30278 8.48398 8.79451 9.45919 9.58344 10.22968 10.70197 11.64923 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.006825 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.043043 B = 4101.387516 C = 5589.493730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 C -0.147 4.147 4 O -0.251 6.251 5 C 0.374 3.626 6 N -0.551 5.551 7 C 0.147 3.853 8 C -0.231 4.231 9 C -0.051 4.051 10 C -0.178 4.178 11 C 0.561 3.439 12 O -0.417 6.417 13 N -0.613 5.613 14 C 0.092 3.908 15 C -0.133 4.133 16 C -0.126 4.126 17 C 0.118 3.882 18 H 0.061 0.939 19 C 0.143 3.857 20 N -0.584 5.584 21 C 0.185 3.815 22 C -0.206 4.206 23 H 0.050 0.950 24 C 0.013 3.987 25 N -0.907 5.907 26 Si 0.882 3.118 27 H -0.294 1.294 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.047 0.953 48 H -0.003 1.003 49 H -0.024 1.024 50 H 0.080 0.920 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -9.373 -5.449 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 C -0.204 4.204 4 O -0.155 6.155 5 C 0.194 3.806 6 N -0.276 5.276 7 C -0.010 4.010 8 C -0.251 4.251 9 C -0.076 4.076 10 C -0.184 4.184 11 C 0.347 3.653 12 O -0.283 6.283 13 N -0.353 5.353 14 C -0.032 4.032 15 C -0.171 4.171 16 C -0.165 4.165 17 C 0.012 3.988 18 H 0.079 0.921 19 C 0.013 3.987 20 N -0.306 5.306 21 C 0.041 3.959 22 C -0.336 4.336 23 H 0.068 0.932 24 C -0.184 4.184 25 N -0.554 5.554 26 Si 0.714 3.286 27 H -0.222 1.222 28 H -0.218 1.218 29 H -0.210 1.210 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.015 0.985 49 H -0.006 1.006 50 H 0.098 0.902 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.947 -7.698 -6.006 14.668 hybrid contribution -0.691 -1.252 -0.378 1.480 sum 10.256 -8.950 -6.384 15.035 Atomic orbital electron populations 1.22302 0.95160 1.03109 1.02224 1.22316 0.94421 0.92982 0.87982 1.21852 1.01380 0.94223 1.02937 1.86661 1.77433 1.14799 1.36614 1.19831 0.87400 0.85385 0.87960 1.67312 1.22294 1.13305 1.24674 1.22446 0.91756 0.87927 0.98891 1.21823 1.07998 1.01331 0.93961 1.22669 0.92511 0.93576 0.98801 1.20278 1.09666 0.93894 0.94597 1.16915 0.79924 0.86838 0.81641 1.90972 1.41122 1.15480 1.80768 1.48010 1.61838 1.17003 1.08437 1.22570 0.95208 0.86910 0.98462 1.22775 0.98185 1.00506 0.95636 1.22657 0.98894 0.97656 0.97299 1.22425 0.99765 0.95598 0.81009 0.92106 1.21085 0.90306 0.94816 0.92483 1.43680 1.46920 1.01856 1.38118 1.20668 0.90815 0.83059 1.01379 1.18737 1.03326 0.95704 1.15863 0.93238 1.24691 0.97598 0.96384 0.99678 1.70042 1.32734 1.07024 1.45611 0.86717 0.81537 0.77831 0.82469 1.22201 1.21780 1.20952 0.92180 0.91271 0.91849 0.89875 0.92273 0.91142 0.90968 0.82836 0.84809 0.82070 0.92025 0.90868 0.90613 0.91061 0.90897 0.90787 0.94635 0.93505 0.98501 1.00613 0.90179 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.33 37.15 0.35 -2.89 16 2 C 0.08 1.45 3.17 -26.74 -0.08 1.37 16 3 C -0.15 -2.29 9.56 37.16 0.36 -1.93 16 4 O -0.25 -5.55 7.91 -39.54 -0.31 -5.86 16 5 C 0.37 7.71 7.48 -16.61 -0.12 7.59 16 6 N -0.55 -9.87 8.59 -12.98 -0.11 -9.98 16 7 C 0.15 2.07 11.17 -17.49 -0.20 1.88 16 8 C -0.23 -2.99 10.09 -39.50 -0.40 -3.39 16 9 C -0.05 -0.77 8.39 -38.89 -0.33 -1.10 16 10 C -0.18 -3.53 5.88 -104.69 -0.62 -4.14 16 11 C 0.56 12.27 5.24 -12.47 -0.07 12.20 16 12 O -0.42 -10.81 9.35 -16.26 -0.15 -10.96 16 13 N -0.61 -11.17 3.06 -164.24 -0.50 -11.67 16 14 C 0.09 1.19 4.90 -2.53 -0.01 1.18 16 15 C -0.13 -1.41 7.09 -24.58 -0.17 -1.58 16 16 C -0.13 -1.57 6.48 -24.90 -0.16 -1.74 16 17 C 0.12 2.09 3.31 -66.95 -0.22 1.87 16 18 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 19 C 0.14 3.01 5.35 -4.04 -0.02 2.99 16 20 N -0.58 -15.31 1.69 -181.11 -0.31 -15.62 16 21 C 0.19 5.06 7.53 59.85 0.45 5.51 16 22 C -0.21 -5.85 6.05 -15.06 -0.09 -5.94 16 23 H 0.05 1.43 7.20 -52.49 -0.38 1.05 16 24 C 0.01 0.38 5.29 -17.43 -0.09 0.29 16 25 N -0.91 -27.87 10.17 55.49 0.56 -27.31 16 26 Si 0.88 23.64 29.19 -169.99 -4.96 18.68 16 27 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 28 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 29 H -0.28 -7.53 5.99 56.52 0.34 -7.19 16 30 H 0.06 1.26 6.84 -51.93 -0.36 0.91 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.41 6.88 -51.93 -0.36 1.05 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.16 2.05 3.50 -52.49 -0.18 1.86 16 40 H 0.06 0.76 7.30 -51.93 -0.38 0.38 16 41 H 0.07 0.85 6.06 -51.93 -0.31 0.54 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 46 H 0.04 0.72 8.13 -51.93 -0.42 0.29 16 47 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 48 H 0.00 -0.09 7.85 -51.93 -0.41 -0.50 16 49 H -0.02 -0.63 8.03 -51.93 -0.42 -1.05 16 50 H 0.08 2.45 5.67 -51.93 -0.29 2.16 16 51 H 0.24 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -35.50 387.15 -9.54 -45.05 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.16 Total: -0.34 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -1.43 Total: 12.18 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.36 Total: -64.58 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.46 Total: -16.83 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.96 Total: 18.68 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.50 -9.54 -45.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275178358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.400 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds