Wall clock time and date at job start Wed Apr 1 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 O 1.42906 * 109.46850 * 119.99391 * 2 1 3 5 5 C 1.35434 * 116.99551 * 90.90982 * 4 2 1 6 6 N 1.32234 * 119.80229 * 4.63351 * 5 4 2 7 7 C 1.31878 * 121.79858 * 180.02562 * 6 5 4 8 8 C 1.38354 * 121.18812 * 359.97275 * 7 6 5 9 9 C 1.38340 * 119.45540 * 359.77136 * 8 7 6 10 10 C 1.39979 * 118.34942 * 0.47113 * 9 8 7 11 11 C 1.47533 * 120.59862 * 179.80696 * 10 9 8 12 12 O 1.21589 * 119.99884 * 189.37431 * 11 10 9 13 13 N 1.34777 * 119.99576 * 9.36680 * 11 10 9 14 14 C 1.47416 * 125.65180 * 6.63593 * 13 11 10 15 15 C 1.54912 * 104.83684 * 155.90584 * 14 13 11 16 16 C 1.55160 * 101.57769 * 37.00403 * 15 14 13 17 17 C 1.47027 * 125.64424 * 186.66899 * 13 11 10 18 18 H 1.08992 * 109.88364 * 300.60068 * 17 13 11 19 19 C 1.53002 * 109.87885 * 61.61318 * 17 13 11 20 20 N 1.46499 * 109.46985 * 305.89126 * 19 17 13 21 21 C 1.46506 * 119.99930 * 278.25443 * 20 19 17 22 22 C 1.36933 * 120.00089 * 98.25990 * 20 19 17 23 23 H 1.08001 * 119.99783 * 337.20873 * 22 20 19 24 24 C 1.38814 * 120.00119 * 157.48428 * 22 20 19 25 25 N 1.31617 * 119.99865 * 358.59297 * 24 22 20 26 26 Si 1.86800 * 119.99954 * 178.59315 * 24 22 20 27 27 H 1.48502 * 109.47165 * 64.98943 * 26 24 22 28 28 H 1.48500 * 109.47345 * 184.98958 * 26 24 22 29 29 H 1.48494 * 109.47308 * 304.99362 * 26 24 22 30 30 H 1.08998 * 109.47366 * 184.71977 * 1 2 3 31 31 H 1.08998 * 109.47261 * 304.72668 * 1 2 3 32 32 H 1.09006 * 109.46978 * 64.72917 * 1 2 3 33 33 H 1.08999 * 109.47544 * 239.99598 * 2 1 3 34 34 H 1.09003 * 109.47649 * 179.97438 * 3 2 1 35 35 H 1.09009 * 109.46943 * 299.99528 * 3 2 1 36 36 H 1.08994 * 109.47577 * 59.99532 * 3 2 1 37 37 H 1.08005 * 119.40740 * 179.97438 * 7 6 5 38 38 H 1.07998 * 120.27347 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.82423 * 180.25596 * 9 8 7 40 40 H 1.09004 * 110.36701 * 274.74314 * 14 13 11 41 41 H 1.09002 * 110.36870 * 37.06370 * 14 13 11 42 42 H 1.09000 * 111.00773 * 155.08241 * 15 14 13 43 43 H 1.09006 * 110.99984 * 278.93454 * 15 14 13 44 44 H 1.09005 * 110.71523 * 206.13585 * 16 15 14 45 45 H 1.08997 * 110.71742 * 82.86812 * 16 15 14 46 46 H 1.09005 * 109.47099 * 185.89371 * 19 17 13 47 47 H 1.09003 * 109.47238 * 65.89291 * 19 17 13 48 48 H 1.09001 * 109.46994 * 272.20557 * 21 20 19 49 49 H 1.08994 * 109.46909 * 32.20931 * 21 20 19 50 50 H 1.09003 * 109.46485 * 152.20898 * 21 20 19 51 51 H 0.97005 * 119.99568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.2292 -2.0051 1.0602 6 7 2.0929 -2.6025 -0.1117 7 6 2.2996 -3.8964 -0.2603 8 6 2.6710 -4.6903 0.8103 9 6 2.8333 -4.1165 2.0586 10 6 2.6033 -2.7424 2.1935 11 6 2.7577 -2.0801 3.5028 12 8 2.3937 -0.9291 3.6485 13 7 3.3019 -2.7510 4.5372 14 6 3.9082 -4.0929 4.4674 15 6 4.8909 -4.1470 5.6638 16 6 4.1090 -3.3551 6.7450 17 6 3.3887 -2.2660 5.9225 18 1 3.9574 -1.3368 5.9550 19 6 1.9834 -2.0356 6.4820 20 7 1.2404 -1.1467 5.5853 21 6 1.4320 0.3034 5.6673 22 6 0.3669 -1.6713 4.6705 23 1 0.4774 -2.6946 4.3434 24 6 -0.6573 -0.8860 4.1593 25 7 -0.8056 0.3541 4.5744 26 14 -1.8250 -1.5894 2.8821 27 1 -2.6136 -2.6929 3.4869 28 1 -2.7455 -0.5230 2.4123 29 1 -1.0443 -2.1117 1.7320 30 1 -0.3634 -1.0241 0.0846 31 1 -0.3634 0.5854 0.8446 32 1 -0.3633 0.4387 -0.9294 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 2.1768 -4.3446 -1.2353 38 1 2.8369 -5.7484 0.6717 39 1 3.1267 -4.7146 2.9086 40 1 3.1420 -4.8613 4.5708 41 1 4.4470 -4.2174 3.5280 42 1 5.0638 -5.1753 5.9812 43 1 5.8308 -3.6517 5.4200 44 1 4.7937 -2.9056 7.4642 45 1 3.3875 -3.9988 7.2481 46 1 2.0557 -1.5784 7.4689 47 1 1.4628 -2.9900 6.5610 48 1 0.7469 0.7192 6.4062 49 1 2.4590 0.5181 5.9627 50 1 1.2325 0.7518 4.6940 51 1 -1.5216 0.9027 4.2174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275178358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:53 Heat of formation + Delta-G solvation = 25.675418 kcal Electronic energy + Delta-G solvation = -34429.995973 eV Core-core repulsion = 30332.262562 eV Total energy + Delta-G solvation = -4097.733410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91543 -40.63806 -39.12300 -37.88151 -36.95519 -34.23886 -34.11173 -33.10628 -32.00013 -30.98065 -30.51278 -28.32503 -27.85085 -26.78102 -25.71801 -24.71395 -23.84284 -22.41281 -22.15636 -21.84440 -20.12637 -19.14015 -18.77025 -18.10045 -17.55019 -17.19821 -16.86821 -16.63392 -16.14168 -16.07556 -15.64594 -15.37700 -14.99792 -14.88888 -14.78915 -14.50307 -14.26343 -14.08636 -13.69213 -13.63806 -13.52160 -13.32454 -13.27612 -13.13550 -13.07425 -13.03991 -12.95819 -12.56782 -12.41668 -12.26625 -11.96621 -11.90583 -11.84796 -11.76301 -11.65438 -11.53974 -11.48573 -10.81430 -10.70118 -10.40921 -10.09374 -9.44287 -9.26764 -8.23914 -7.63169 -5.03114 -0.09818 0.34150 1.28547 1.32721 1.36017 2.13417 2.27707 2.45749 2.53699 3.05954 3.31546 3.53414 3.66596 3.77771 3.82435 3.93842 3.95477 3.98406 4.08377 4.16711 4.19179 4.23029 4.28623 4.38250 4.53302 4.55244 4.60556 4.67427 4.69208 4.75029 4.77810 4.79414 4.88372 4.96686 5.01990 5.06234 5.08795 5.10909 5.16135 5.17462 5.22205 5.29072 5.49808 5.56098 5.59442 5.65491 5.85155 6.06444 6.43463 6.53515 6.83591 7.05047 7.34775 7.92062 8.09463 8.52712 9.40715 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.006825 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.043043 B = 4101.387516 C = 5589.493730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 C -0.138 4.138 4 O -0.289 6.289 5 C 0.342 3.658 6 N -0.566 5.566 7 C 0.144 3.856 8 C -0.211 4.211 9 C -0.046 4.046 10 C -0.219 4.219 11 C 0.554 3.446 12 O -0.481 6.481 13 N -0.619 5.619 14 C 0.081 3.919 15 C -0.117 4.117 16 C -0.115 4.115 17 C 0.120 3.880 18 H 0.035 0.965 19 C 0.138 3.862 20 N -0.595 5.595 21 C 0.213 3.787 22 C -0.177 4.177 23 H 0.045 0.955 24 C -0.042 4.042 25 N -0.939 5.939 26 Si 0.930 3.070 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.285 1.285 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.198 0.802 38 H 0.187 0.813 39 H 0.189 0.811 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.050 0.950 48 H -0.028 1.028 49 H -0.013 1.013 50 H 0.042 0.958 51 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.866 -14.026 -6.384 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.195 4.195 4 O -0.195 6.195 5 C 0.164 3.836 6 N -0.291 5.291 7 C -0.013 4.013 8 C -0.230 4.230 9 C -0.070 4.070 10 C -0.225 4.225 11 C 0.341 3.659 12 O -0.353 6.353 13 N -0.357 5.357 14 C -0.041 4.041 15 C -0.155 4.155 16 C -0.154 4.154 17 C 0.014 3.986 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.317 5.317 21 C 0.068 3.932 22 C -0.308 4.308 23 H 0.062 0.938 24 C -0.235 4.235 25 N -0.590 5.590 26 Si 0.763 3.237 27 H -0.216 1.216 28 H -0.227 1.227 29 H -0.212 1.212 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.215 0.785 38 H 0.204 0.796 39 H 0.206 0.794 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.068 0.932 48 H -0.010 1.010 49 H 0.005 0.995 50 H 0.061 0.939 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.261 -12.450 -6.915 19.459 hybrid contribution -1.225 0.015 -0.160 1.236 sum 12.036 -12.435 -7.074 18.696 Atomic orbital electron populations 1.22232 0.96152 1.00967 1.02511 1.22516 0.93657 0.94111 0.87857 1.21835 1.01704 0.92866 1.03143 1.86632 1.78120 1.16366 1.38360 1.20133 0.89047 0.85143 0.89309 1.67339 1.22841 1.15297 1.23646 1.23367 0.89774 0.86770 1.01365 1.22392 1.04876 1.03547 0.92212 1.23076 0.91315 0.91683 1.00959 1.20388 1.12657 0.95992 0.93492 1.17487 0.78855 0.86538 0.83009 1.90951 1.44291 1.17945 1.82071 1.48141 1.60937 1.18888 1.07694 1.22934 0.96189 0.84226 1.00743 1.22783 0.97112 1.02429 0.93190 1.22625 0.99200 0.96122 0.97411 1.22252 0.97309 0.97082 0.81966 0.94661 1.21364 0.91602 0.93781 0.92203 1.43790 1.47397 1.01796 1.38734 1.20146 0.90493 0.84192 0.98360 1.18722 1.02112 0.94924 1.15024 0.93763 1.25182 0.99607 0.96832 1.01872 1.70204 1.33368 1.08079 1.47375 0.85925 0.79940 0.76976 0.80880 1.21595 1.22678 1.21245 0.94676 0.94903 0.88107 0.88394 0.91663 0.87579 0.93942 0.78498 0.79600 0.79418 0.90417 0.89193 0.86684 0.90624 0.88955 0.89582 0.93777 0.93161 1.00954 0.99467 0.93902 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.41 9.33 71.98 0.67 -5.73 16 2 C 0.07 2.84 3.17 30.59 0.10 2.94 16 3 C -0.14 -4.51 9.56 71.98 0.69 -3.82 16 4 O -0.29 -13.59 7.91 -66.70 -0.53 -14.12 16 5 C 0.34 14.38 7.48 85.13 0.64 15.02 16 6 N -0.57 -19.67 8.59 -307.99 -2.65 -22.31 16 7 C 0.14 3.52 11.17 84.71 0.95 4.47 16 8 C -0.21 -4.42 10.09 22.32 0.23 -4.19 16 9 C -0.05 -1.25 8.39 22.72 0.19 -1.06 16 10 C -0.22 -8.64 5.88 -19.91 -0.12 -8.76 16 11 C 0.55 24.77 5.24 86.69 0.45 25.22 16 12 O -0.48 -26.52 9.35 16.60 0.16 -26.36 16 13 N -0.62 -21.91 3.06 -791.79 -2.42 -24.33 16 14 C 0.08 1.77 4.90 86.86 0.43 2.20 16 15 C -0.12 -1.88 7.09 31.99 0.23 -1.66 16 16 C -0.12 -2.44 6.48 31.78 0.21 -2.23 16 17 C 0.12 4.14 3.31 45.34 0.15 4.29 16 18 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 19 C 0.14 5.81 5.35 86.38 0.46 6.27 16 20 N -0.60 -32.40 1.69 -726.91 -1.23 -33.63 16 21 C 0.21 12.44 7.53 127.77 0.96 13.40 16 22 C -0.18 -10.39 6.05 84.03 0.51 -9.88 16 23 H 0.04 2.61 7.20 -2.91 -0.02 2.59 16 24 C -0.04 -2.63 5.29 84.86 0.45 -2.18 16 25 N -0.94 -61.69 10.17 21.65 0.22 -61.47 16 26 Si 0.93 51.20 29.19 68.60 2.00 53.20 16 27 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 28 H -0.30 -16.69 7.11 99.48 0.71 -15.99 16 29 H -0.29 -15.63 5.99 99.48 0.60 -15.03 16 30 H 0.03 1.53 6.84 -2.39 -0.02 1.51 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.10 3.35 6.88 -2.39 -0.02 3.33 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.20 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.19 3.91 3.50 -2.91 -0.01 3.90 16 40 H 0.08 1.51 7.30 -2.38 -0.02 1.50 16 41 H 0.09 1.71 6.06 -2.39 -0.01 1.69 16 42 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.09 1.67 7.75 -2.39 -0.02 1.65 16 46 H 0.04 1.77 8.13 -2.38 -0.02 1.75 16 47 H 0.05 2.07 7.83 -2.39 -0.02 2.05 16 48 H -0.03 -1.72 7.85 -2.39 -0.02 -1.73 16 49 H -0.01 -0.71 8.03 -2.39 -0.02 -0.73 16 50 H 0.04 2.83 5.67 -2.39 -0.01 2.81 16 51 H 0.23 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -88.27 387.15 3.54 -84.72 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.81 Total: 10.00 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 7.18 Total: 34.29 kcal Atomic # 7 Polarization: -135.66 SS G_CDS: -6.08 Total: -141.74 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.37 Total: -40.48 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.00 Total: 53.20 kcal Total: -88.27 3.54 -84.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275178358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.398 kcal (2) G-P(sol) polarization free energy of solvation -88.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds