Wall clock time and date at job start Wed Apr 1 2020 04:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 O 1.42897 * 109.46924 * 119.99484 * 2 1 3 5 5 C 1.35684 * 116.99824 * 149.99819 * 4 2 1 6 6 C 1.38893 * 119.62526 * 180.02562 * 5 4 2 7 7 C 1.39573 * 118.94976 * 180.02562 * 6 5 4 8 8 C 1.48161 * 120.89248 * 179.72383 * 7 6 5 9 9 O 1.21510 * 120.00348 * 322.13463 * 8 7 6 10 10 N 1.34784 * 119.99662 * 142.13197 * 8 7 6 11 11 C 1.46491 * 120.00043 * 4.83554 * 10 8 7 12 12 C 1.46501 * 119.99498 * 184.83173 * 10 8 7 13 13 H 1.08996 * 109.47529 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46718 * 240.00276 * 12 10 8 15 15 N 1.46495 * 109.47486 * 55.00170 * 14 12 10 16 16 C 1.36937 * 120.00423 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99425 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00231 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47159 * 120.00513 * 20 18 16 23 23 H 1.48504 * 109.46729 * 240.00232 * 20 18 16 24 24 C 1.52994 * 109.46941 * 120.00338 * 12 10 8 25 25 C 1.53002 * 117.49784 * 248.74186 * 24 12 10 26 26 C 1.53004 * 117.49600 * 180.08388 * 24 12 10 27 27 C 1.39966 * 118.21458 * 359.97438 * 7 6 5 28 28 C 1.37979 * 119.13411 * 0.02562 * 27 7 6 29 29 N 1.31904 * 120.97667 * 0.02562 * 28 27 7 30 30 H 1.09003 * 109.47185 * 300.00036 * 1 2 3 31 31 H 1.09002 * 109.47149 * 60.00326 * 1 2 3 32 32 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.47193 * 239.99977 * 2 1 3 34 34 H 1.09002 * 109.46815 * 299.99879 * 3 2 1 35 35 H 1.09003 * 109.47093 * 59.99907 * 3 2 1 36 36 H 1.08996 * 109.46843 * 179.97438 * 3 2 1 37 37 H 1.08002 * 120.52787 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.47657 * 84.75075 * 11 10 8 39 39 H 1.08997 * 109.47087 * 204.75325 * 11 10 8 40 40 H 1.09006 * 109.47214 * 324.74884 * 11 10 8 41 41 H 1.09002 * 109.47075 * 175.00317 * 14 12 10 42 42 H 1.09005 * 109.47165 * 294.99933 * 14 12 10 43 43 H 0.97003 * 119.99864 * 359.97438 * 15 14 12 44 44 H 0.97002 * 120.00217 * 180.02562 * 19 18 16 45 45 H 1.09001 * 115.55196 * 34.41868 * 24 12 10 46 46 H 1.09003 * 117.49908 * 0.02562 * 25 24 12 47 47 H 1.08996 * 117.49776 * 145.02446 * 25 24 12 48 48 H 1.09006 * 117.49577 * 214.97806 * 26 24 12 49 49 H 1.08996 * 117.50232 * 359.97319 * 26 24 12 50 50 H 1.08003 * 120.43395 * 179.97438 * 27 7 6 51 51 H 1.07999 * 119.50833 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.1987 -1.3130 1.0653 6 6 3.7129 -1.9858 2.1663 7 6 4.9408 -2.6382 2.0464 8 6 5.5321 -3.3638 3.1949 9 8 5.4257 -2.9130 4.3183 10 7 6.1880 -4.5239 2.9936 11 6 6.4086 -5.0138 1.6308 12 6 6.6805 -5.2949 4.1379 13 1 6.4250 -4.7768 5.0622 14 6 8.2004 -5.4402 4.0387 15 7 8.8112 -4.1139 3.9217 16 6 10.1714 -3.9930 3.8195 17 1 10.7938 -4.8756 3.8247 18 6 10.7501 -2.7362 3.7081 19 7 9.9915 -1.6607 3.7011 20 14 12.6056 -2.5715 3.5679 21 1 13.2262 -3.9202 3.6005 22 1 12.9476 -1.8994 2.2887 23 1 13.1179 -1.7638 4.7039 24 6 6.0342 -6.6817 4.1345 25 6 5.0335 -6.9973 5.2480 26 6 6.4209 -7.6439 5.2595 27 6 5.6013 -2.5843 0.8135 28 6 5.0202 -1.8935 -0.2301 29 7 3.8582 -1.2877 -0.0798 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.1711 -2.0038 3.1004 38 1 7.3058 -4.5516 1.2192 39 1 6.5335 -6.0964 1.6496 40 1 5.5503 -4.7579 1.0094 41 1 8.5771 -5.9361 4.9333 42 1 8.4520 -6.0349 3.1605 43 1 8.2521 -3.3212 3.9166 44 1 10.3959 -0.7824 3.6229 45 1 5.8433 -7.1090 3.1501 46 1 4.8352 -6.2169 5.9826 47 1 4.1844 -7.6327 4.9962 48 1 6.4839 -8.7044 5.0152 49 1 7.1360 -7.2892 6.0017 50 1 6.5536 -3.0761 0.6810 51 1 5.5243 -1.8483 -1.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277719153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:36 Heat of formation + Delta-G solvation = 15.806667 kcal Electronic energy + Delta-G solvation = -31259.285296 eV Core-core repulsion = 27161.123944 eV Total energy + Delta-G solvation = -4098.161351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94925 -39.79983 -38.24698 -37.40096 -35.25151 -34.15772 -33.42215 -32.59812 -31.12653 -30.18266 -28.26367 -27.46922 -26.80653 -24.95814 -23.94658 -23.32854 -22.49853 -21.85129 -21.54472 -20.27241 -19.24774 -18.28101 -17.25133 -17.14157 -16.47158 -16.08319 -15.96149 -15.66001 -15.07521 -14.89403 -14.69569 -14.50933 -14.18579 -13.94479 -13.82278 -13.42952 -13.27801 -13.12856 -13.02449 -12.81480 -12.53842 -12.51358 -12.37355 -12.12811 -12.08176 -11.58925 -11.53344 -11.45059 -11.09449 -11.08729 -10.93160 -10.84821 -10.73627 -10.37872 -10.11362 -10.03609 -9.87767 -9.78674 -9.65086 -9.37270 -8.87305 -8.51736 -8.31475 -6.89871 -5.72561 -3.02581 0.85889 1.15954 2.75667 3.02849 3.22019 3.43516 3.48986 3.51631 3.78403 3.90927 4.20456 4.51680 4.58973 4.66879 4.77616 4.79115 4.94243 4.99416 5.00371 5.03962 5.09197 5.12233 5.31408 5.32717 5.36851 5.49604 5.54845 5.58103 5.61096 5.63034 5.65895 5.70825 5.74393 5.78864 5.86962 5.91146 5.97326 6.00790 6.02543 6.14753 6.20217 6.22371 6.29339 6.33008 6.46345 6.70634 6.93039 7.20481 7.59321 7.71374 7.77190 8.37770 8.44378 9.56035 10.14160 10.49465 11.49211 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009357 B = 0.003229 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.660133 B = 8669.757877 C =10862.475985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.169 4.169 4 O -0.301 6.301 5 C 0.318 3.682 6 C -0.142 4.142 7 C -0.036 4.036 8 C 0.563 3.437 9 O -0.521 6.521 10 N -0.584 5.584 11 C 0.073 3.927 12 C 0.163 3.837 13 H 0.102 0.898 14 C 0.149 3.851 15 N -0.729 5.729 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.927 5.927 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.160 4.160 25 C -0.179 4.179 26 C -0.169 4.169 27 C -0.180 4.180 28 C 0.135 3.865 29 N -0.531 5.531 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.022 0.978 43 H 0.386 0.614 44 H 0.254 0.746 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.099 0.901 50 H 0.155 0.845 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 -5.050 -9.280 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.227 4.227 4 O -0.209 6.209 5 C 0.139 3.861 6 C -0.163 4.163 7 C -0.047 4.047 8 C 0.350 3.650 9 O -0.397 6.397 10 N -0.316 5.316 11 C -0.070 4.070 12 C 0.060 3.940 13 H 0.120 0.880 14 C 0.020 3.980 15 N -0.373 5.373 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.575 5.575 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.180 4.180 25 C -0.216 4.216 26 C -0.206 4.206 27 C -0.200 4.200 28 C -0.020 4.020 29 N -0.256 5.256 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.124 0.876 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.118 0.882 50 H 0.173 0.827 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.266 -4.373 -9.153 20.893 hybrid contribution 1.448 0.093 0.298 1.482 sum -16.817 -4.280 -8.855 19.482 Atomic orbital electron populations 1.21907 0.93019 1.02914 1.02914 1.22322 0.94276 0.92808 0.88047 1.22222 1.02392 0.95614 1.02461 1.86301 1.31608 1.64466 1.38551 1.19536 0.86356 0.90655 0.89554 1.21002 0.96431 0.99822 0.99044 1.20098 0.93958 0.96537 0.94135 1.18036 0.78367 0.80655 0.87932 1.90802 1.59301 1.65716 1.23861 1.47418 1.55098 1.21619 1.07439 1.22110 1.01561 1.00508 0.82788 1.20974 0.94525 0.88745 0.89795 0.88006 1.20932 0.88588 0.90006 0.98458 1.42323 1.04561 1.01804 1.88655 1.19229 0.83169 0.92330 1.42431 0.91230 1.24747 0.97594 0.95483 1.03012 1.69700 1.33552 0.97162 1.57111 0.86159 0.85689 0.77364 0.77208 1.20620 1.21937 1.21920 1.22546 1.03772 0.96564 0.95081 1.23026 0.93049 1.03644 1.01870 1.22932 0.98399 0.97951 1.01351 1.22631 1.02571 1.02228 0.92611 1.22354 0.89538 0.91107 0.99040 1.67084 1.10848 1.22968 1.24651 0.91628 0.90587 0.91880 0.89268 0.91216 0.91982 0.91815 0.83520 0.91153 0.90939 0.91230 0.95257 0.96017 0.77937 0.93605 0.87607 0.88648 0.89132 0.88794 0.88242 0.82716 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 37.16 0.36 -0.81 16 2 C 0.08 0.84 3.11 -26.73 -0.08 0.76 16 3 C -0.17 -1.64 9.53 37.16 0.35 -1.28 16 4 O -0.30 -4.00 9.76 -18.75 -0.18 -4.18 16 5 C 0.32 4.55 7.45 -17.16 -0.13 4.42 16 6 C -0.14 -2.16 9.68 -38.84 -0.38 -2.53 16 7 C -0.04 -0.58 5.28 -104.68 -0.55 -1.13 16 8 C 0.56 10.42 7.11 -12.18 -0.09 10.34 16 9 O -0.52 -11.58 16.27 5.36 0.09 -11.49 16 10 N -0.58 -9.57 2.24 -174.94 -0.39 -9.96 16 11 C 0.07 0.94 7.96 59.84 0.48 1.42 16 12 C 0.16 2.75 2.41 -67.93 -0.16 2.59 16 13 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 14 C 0.15 2.94 5.32 -4.04 -0.02 2.92 16 15 N -0.73 -18.56 5.43 -59.91 -0.33 -18.89 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 20 Si 0.90 22.51 29.55 -169.99 -5.02 17.48 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 24 C -0.16 -2.08 5.12 -90.62 -0.46 -2.54 16 25 C -0.18 -2.11 10.18 -26.69 -0.27 -2.39 16 26 C -0.17 -1.97 9.80 -26.69 -0.26 -2.23 16 27 C -0.18 -2.47 7.68 -39.03 -0.30 -2.77 16 28 C 0.13 1.64 11.17 -17.62 -0.20 1.45 16 29 N -0.53 -7.12 8.61 -13.38 -0.12 -7.24 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.94 6.98 -51.94 -0.36 0.58 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.07 1.00 6.88 -51.93 -0.36 0.64 16 39 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 40 H 0.07 0.75 5.84 -51.93 -0.30 0.45 16 41 H 0.03 0.59 7.48 -51.93 -0.39 0.20 16 42 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 43 H 0.39 10.77 7.06 -40.82 -0.29 10.48 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.11 1.23 6.66 -51.93 -0.35 0.88 16 46 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.10 1.24 7.67 -51.93 -0.40 0.84 16 50 H 0.16 2.05 5.28 -52.48 -0.28 1.77 16 51 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 413.41 15.07 6.23 6.23 Total: -1.00 -34.15 413.41 -8.97 -43.12 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -8.00 Total: 11.86 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.97 Total: 0.89 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.11 Total: -63.91 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.10 Total: -15.67 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.15 -8.97 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277719153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.923 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds