Wall clock time and date at job start Wed Apr 1 2020 04:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 O 1.42897 * 109.46924 * 119.99484 * 2 1 3 5 5 C 1.35684 * 116.99824 * 149.99819 * 4 2 1 6 6 C 1.38893 * 119.62526 * 180.02562 * 5 4 2 7 7 C 1.39573 * 118.94976 * 180.02562 * 6 5 4 8 8 C 1.48161 * 120.89248 * 179.72383 * 7 6 5 9 9 O 1.21510 * 120.00348 * 322.13463 * 8 7 6 10 10 N 1.34784 * 119.99662 * 142.13197 * 8 7 6 11 11 C 1.46491 * 120.00043 * 4.83554 * 10 8 7 12 12 C 1.46501 * 119.99498 * 184.83173 * 10 8 7 13 13 H 1.08996 * 109.47529 * 359.97438 * 12 10 8 14 14 C 1.53002 * 109.46718 * 240.00276 * 12 10 8 15 15 N 1.46495 * 109.47486 * 55.00170 * 14 12 10 16 16 C 1.36937 * 120.00423 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99425 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00231 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47159 * 120.00513 * 20 18 16 23 23 H 1.48504 * 109.46729 * 240.00232 * 20 18 16 24 24 C 1.52994 * 109.46941 * 120.00338 * 12 10 8 25 25 C 1.53002 * 117.49784 * 248.74186 * 24 12 10 26 26 C 1.53004 * 117.49600 * 180.08388 * 24 12 10 27 27 C 1.39966 * 118.21458 * 359.97438 * 7 6 5 28 28 C 1.37979 * 119.13411 * 0.02562 * 27 7 6 29 29 N 1.31904 * 120.97667 * 0.02562 * 28 27 7 30 30 H 1.09003 * 109.47185 * 300.00036 * 1 2 3 31 31 H 1.09002 * 109.47149 * 60.00326 * 1 2 3 32 32 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.47193 * 239.99977 * 2 1 3 34 34 H 1.09002 * 109.46815 * 299.99879 * 3 2 1 35 35 H 1.09003 * 109.47093 * 59.99907 * 3 2 1 36 36 H 1.08996 * 109.46843 * 179.97438 * 3 2 1 37 37 H 1.08002 * 120.52787 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.47657 * 84.75075 * 11 10 8 39 39 H 1.08997 * 109.47087 * 204.75325 * 11 10 8 40 40 H 1.09006 * 109.47214 * 324.74884 * 11 10 8 41 41 H 1.09002 * 109.47075 * 175.00317 * 14 12 10 42 42 H 1.09005 * 109.47165 * 294.99933 * 14 12 10 43 43 H 0.97003 * 119.99864 * 359.97438 * 15 14 12 44 44 H 0.97002 * 120.00217 * 180.02562 * 19 18 16 45 45 H 1.09001 * 115.55196 * 34.41868 * 24 12 10 46 46 H 1.09003 * 117.49908 * 0.02562 * 25 24 12 47 47 H 1.08996 * 117.49776 * 145.02446 * 25 24 12 48 48 H 1.09006 * 117.49577 * 214.97806 * 26 24 12 49 49 H 1.08996 * 117.50232 * 359.97319 * 26 24 12 50 50 H 1.08003 * 120.43395 * 179.97438 * 27 7 6 51 51 H 1.07999 * 119.50833 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.1987 -1.3130 1.0653 6 6 3.7129 -1.9858 2.1663 7 6 4.9408 -2.6382 2.0464 8 6 5.5321 -3.3638 3.1949 9 8 5.4257 -2.9130 4.3183 10 7 6.1880 -4.5239 2.9936 11 6 6.4086 -5.0138 1.6308 12 6 6.6805 -5.2949 4.1379 13 1 6.4250 -4.7768 5.0622 14 6 8.2004 -5.4402 4.0387 15 7 8.8112 -4.1139 3.9217 16 6 10.1714 -3.9930 3.8195 17 1 10.7938 -4.8756 3.8247 18 6 10.7501 -2.7362 3.7081 19 7 9.9915 -1.6607 3.7011 20 14 12.6056 -2.5715 3.5679 21 1 13.2262 -3.9202 3.6005 22 1 12.9476 -1.8994 2.2887 23 1 13.1179 -1.7638 4.7039 24 6 6.0342 -6.6817 4.1345 25 6 5.0335 -6.9973 5.2480 26 6 6.4209 -7.6439 5.2595 27 6 5.6013 -2.5843 0.8135 28 6 5.0202 -1.8935 -0.2301 29 7 3.8582 -1.2877 -0.0798 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.1711 -2.0038 3.1004 38 1 7.3058 -4.5516 1.2192 39 1 6.5335 -6.0964 1.6496 40 1 5.5503 -4.7579 1.0094 41 1 8.5771 -5.9361 4.9333 42 1 8.4520 -6.0349 3.1605 43 1 8.2521 -3.3212 3.9166 44 1 10.3959 -0.7824 3.6229 45 1 5.8433 -7.1090 3.1501 46 1 4.8352 -6.2169 5.9826 47 1 4.1844 -7.6327 4.9962 48 1 6.4839 -8.7044 5.0152 49 1 7.1360 -7.2892 6.0017 50 1 6.5536 -3.0761 0.6810 51 1 5.5243 -1.8483 -1.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277719153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:35 Heat of formation + Delta-G solvation = -6.400286 kcal Electronic energy + Delta-G solvation = -31260.248261 eV Core-core repulsion = 27161.123944 eV Total energy + Delta-G solvation = -4099.124317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.10479 -41.03597 -39.30079 -38.64545 -36.63763 -35.91763 -34.27123 -33.89147 -32.96020 -31.30052 -29.83470 -28.16667 -28.02105 -26.49555 -25.46075 -24.41734 -23.79320 -22.91928 -22.74617 -21.35352 -20.54750 -19.42536 -19.14515 -18.42264 -17.68543 -17.28216 -17.12269 -16.71708 -16.56161 -16.34375 -15.98659 -15.56127 -15.42542 -15.21202 -15.02393 -14.80620 -14.68983 -14.63634 -14.24990 -13.98015 -13.75569 -13.36481 -13.29212 -13.18789 -13.14155 -12.93416 -12.87304 -12.76709 -12.61295 -12.40975 -12.22275 -12.05672 -11.93326 -11.78729 -11.76897 -11.49368 -11.21665 -11.01666 -10.98015 -10.90557 -10.57224 -9.68910 -9.55556 -8.99978 -7.92584 -5.23116 -0.32947 0.07051 1.45934 1.47629 1.57455 1.59052 1.72192 2.09534 2.55036 2.65791 2.88466 3.18739 3.36389 3.40390 3.59929 3.86148 3.87549 3.96100 3.97626 4.01074 4.03647 4.08917 4.12628 4.28402 4.28800 4.31608 4.40995 4.53465 4.56302 4.67782 4.69047 4.69880 4.78974 4.82148 4.84552 4.87326 4.89309 4.93098 5.01560 5.04667 5.08217 5.19494 5.23876 5.26839 5.29162 5.34224 5.48693 5.58367 6.20534 6.25383 6.28013 6.70079 6.98955 7.33106 8.08535 8.32064 9.30280 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009357 B = 0.003229 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.660133 B = 8669.757877 C =10862.475985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 C -0.166 4.166 4 O -0.313 6.313 5 C 0.317 3.683 6 C -0.158 4.158 7 C -0.050 4.050 8 C 0.553 3.447 9 O -0.575 6.575 10 N -0.580 5.580 11 C 0.069 3.931 12 C 0.169 3.831 13 H 0.065 0.935 14 C 0.149 3.851 15 N -0.742 5.742 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.292 1.292 23 H -0.300 1.300 24 C -0.166 4.166 25 C -0.175 4.175 26 C -0.158 4.158 27 C -0.181 4.181 28 C 0.147 3.853 29 N -0.529 5.529 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.137 0.863 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.041 0.959 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.130 0.870 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.085 0.915 50 H 0.161 0.839 51 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 -6.882 -11.756 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 C -0.224 4.224 4 O -0.221 6.221 5 C 0.139 3.861 6 C -0.179 4.179 7 C -0.061 4.061 8 C 0.342 3.658 9 O -0.455 6.455 10 N -0.310 5.310 11 C -0.072 4.072 12 C 0.066 3.934 13 H 0.083 0.917 14 C 0.022 3.978 15 N -0.385 5.385 16 C -0.371 4.371 17 H 0.098 0.902 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.219 1.219 23 H -0.228 1.228 24 C -0.185 4.185 25 C -0.212 4.212 26 C -0.196 4.196 27 C -0.201 4.201 28 C -0.008 4.008 29 N -0.253 5.253 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.155 0.845 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.202 0.798 44 H 0.057 0.943 45 H 0.148 0.852 46 H 0.094 0.906 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.104 0.896 50 H 0.178 0.822 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -18.547 -6.284 -11.652 22.787 hybrid contribution 1.489 0.636 1.063 1.937 sum -17.058 -5.648 -10.589 20.856 Atomic orbital electron populations 1.21921 0.90880 1.03324 1.04099 1.22643 0.95916 0.92726 0.86952 1.22214 1.00983 0.95532 1.03633 1.86301 1.31100 1.64458 1.40276 1.19552 0.86764 0.90392 0.89418 1.20974 0.96707 1.00903 0.99344 1.19985 0.94584 0.97331 0.94160 1.18549 0.78252 0.81016 0.87991 1.90759 1.61533 1.67199 1.26008 1.47541 1.53813 1.20886 1.08751 1.22332 1.02049 1.01871 0.80977 1.20765 0.93024 0.90831 0.88796 0.91672 1.21103 0.90293 0.87515 0.98883 1.42542 1.03957 1.03376 1.88614 1.19660 0.84442 0.92576 1.40434 0.90238 1.25580 1.02093 0.95274 1.03844 1.69889 1.35388 0.97398 1.59281 0.85074 0.80349 0.77794 0.76520 1.18678 1.21866 1.22761 1.22455 1.04749 0.94398 0.96866 1.23060 0.94074 1.03416 1.00637 1.23020 0.97673 0.99032 0.99864 1.22730 1.02622 1.02701 0.92091 1.22978 0.88796 0.89115 0.99914 1.67222 1.11194 1.22902 1.24011 0.91733 0.88068 0.91879 0.89332 0.88672 0.92195 0.93911 0.84468 0.92322 0.88376 0.88926 0.95211 0.94144 0.79776 0.94331 0.85174 0.90574 0.86633 0.85937 0.89628 0.82193 0.77890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.56 71.98 0.69 -1.31 16 2 C 0.07 1.43 3.11 30.59 0.10 1.53 16 3 C -0.17 -3.05 9.53 71.98 0.69 -2.36 16 4 O -0.31 -8.34 9.76 -90.02 -0.88 -9.22 16 5 C 0.32 9.13 7.45 84.80 0.63 9.76 16 6 C -0.16 -5.04 9.68 22.75 0.22 -4.82 16 7 C -0.05 -1.64 5.28 -19.90 -0.11 -1.75 16 8 C 0.55 21.60 7.11 86.88 0.62 22.22 16 9 O -0.57 -27.68 16.27 -3.75 -0.06 -27.74 16 10 N -0.58 -19.28 2.24 -825.67 -1.85 -21.14 16 11 C 0.07 1.68 7.96 127.77 1.02 2.69 16 12 C 0.17 5.82 2.41 44.99 0.11 5.93 16 13 H 0.07 2.73 6.67 -2.39 -0.02 2.71 16 14 C 0.15 5.89 5.32 86.38 0.46 6.35 16 15 N -0.74 -38.54 5.43 -343.45 -1.87 -40.41 16 16 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 20 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 C -0.17 -4.04 5.12 -10.79 -0.06 -4.10 16 25 C -0.17 -3.92 10.18 30.62 0.31 -3.61 16 26 C -0.16 -3.38 9.80 30.62 0.30 -3.08 16 27 C -0.18 -4.87 7.68 22.63 0.17 -4.70 16 28 C 0.15 3.33 11.17 84.62 0.94 4.27 16 29 N -0.53 -13.58 8.61 -309.14 -2.66 -16.24 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.74 6.98 -2.39 -0.02 1.73 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.06 1.60 6.88 -2.39 -0.02 1.58 16 39 H 0.10 1.87 6.50 -2.39 -0.02 1.85 16 40 H 0.09 1.84 5.84 -2.38 -0.01 1.82 16 41 H 0.03 1.19 7.48 -2.39 -0.02 1.17 16 42 H 0.04 1.48 7.84 -2.38 -0.02 1.46 16 43 H 0.37 21.53 7.06 -92.71 -0.65 20.87 16 44 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.13 2.57 6.66 -2.39 -0.02 2.56 16 46 H 0.08 2.01 8.05 -2.39 -0.02 1.99 16 47 H 0.12 2.03 8.14 -2.39 -0.02 2.02 16 48 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 49 H 0.09 2.07 7.67 -2.39 -0.02 2.06 16 50 H 0.16 4.12 5.28 -2.91 -0.02 4.10 16 51 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -77.55 413.41 2.68 -74.87 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: 0.29 Total: 41.77 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 7.40 Total: 10.53 kcal Atomic # 7 Polarization: -132.77 SS G_CDS: -6.10 Total: -138.87 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.94 Total: -36.95 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -77.55 2.68 -74.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277719153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.469 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds