Wall clock time and date at job start Wed Apr 1 2020 04:49:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.47177 * 2 1
4 4 O 1.42897 * 109.46924 * 119.99484 * 2 1 3
5 5 C 1.35684 * 116.99824 * 149.99819 * 4 2 1
6 6 C 1.38893 * 119.62526 * 180.02562 * 5 4 2
7 7 C 1.39573 * 118.94976 * 180.02562 * 6 5 4
8 8 C 1.48161 * 120.89248 * 179.72383 * 7 6 5
9 9 O 1.21510 * 120.00348 * 322.13463 * 8 7 6
10 10 N 1.34784 * 119.99662 * 142.13197 * 8 7 6
11 11 C 1.46491 * 120.00043 * 4.83554 * 10 8 7
12 12 C 1.46501 * 119.99498 * 184.83173 * 10 8 7
13 13 H 1.08996 * 109.47529 * 359.97438 * 12 10 8
14 14 C 1.53002 * 109.46718 * 240.00276 * 12 10 8
15 15 N 1.46495 * 109.47486 * 55.00170 * 14 12 10
16 16 C 1.36937 * 120.00423 * 179.97438 * 15 14 12
17 17 H 1.08007 * 119.99425 * 0.02562 * 16 15 14
18 18 C 1.38809 * 120.00231 * 179.97438 * 16 15 14
19 19 N 1.31616 * 119.99974 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99821 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47309 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47159 * 120.00513 * 20 18 16
23 23 H 1.48504 * 109.46729 * 240.00232 * 20 18 16
24 24 C 1.52994 * 109.46941 * 120.00338 * 12 10 8
25 25 C 1.53002 * 117.49784 * 248.74186 * 24 12 10
26 26 C 1.53004 * 117.49600 * 180.08388 * 24 12 10
27 27 C 1.39966 * 118.21458 * 359.97438 * 7 6 5
28 28 C 1.37979 * 119.13411 * 0.02562 * 27 7 6
29 29 N 1.31904 * 120.97667 * 0.02562 * 28 27 7
30 30 H 1.09003 * 109.47185 * 300.00036 * 1 2 3
31 31 H 1.09002 * 109.47149 * 60.00326 * 1 2 3
32 32 H 1.08998 * 109.47127 * 179.97438 * 1 2 3
33 33 H 1.08989 * 109.47193 * 239.99977 * 2 1 3
34 34 H 1.09002 * 109.46815 * 299.99879 * 3 2 1
35 35 H 1.09003 * 109.47093 * 59.99907 * 3 2 1
36 36 H 1.08996 * 109.46843 * 179.97438 * 3 2 1
37 37 H 1.08002 * 120.52787 * 0.02562 * 6 5 4
38 38 H 1.08998 * 109.47657 * 84.75075 * 11 10 8
39 39 H 1.08997 * 109.47087 * 204.75325 * 11 10 8
40 40 H 1.09006 * 109.47214 * 324.74884 * 11 10 8
41 41 H 1.09002 * 109.47075 * 175.00317 * 14 12 10
42 42 H 1.09005 * 109.47165 * 294.99933 * 14 12 10
43 43 H 0.97003 * 119.99864 * 359.97438 * 15 14 12
44 44 H 0.97002 * 120.00217 * 180.02562 * 19 18 16
45 45 H 1.09001 * 115.55196 * 34.41868 * 24 12 10
46 46 H 1.09003 * 117.49908 * 0.02562 * 25 24 12
47 47 H 1.08996 * 117.49776 * 145.02446 * 25 24 12
48 48 H 1.09006 * 117.49577 * 214.97806 * 26 24 12
49 49 H 1.08996 * 117.50232 * 359.97319 * 26 24 12
50 50 H 1.08003 * 120.43395 * 179.97438 * 27 7 6
51 51 H 1.07999 * 119.50833 * 180.02562 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6735 1.1668
5 6 3.1987 -1.3130 1.0653
6 6 3.7129 -1.9858 2.1663
7 6 4.9408 -2.6382 2.0464
8 6 5.5321 -3.3638 3.1949
9 8 5.4257 -2.9130 4.3183
10 7 6.1880 -4.5239 2.9936
11 6 6.4086 -5.0138 1.6308
12 6 6.6805 -5.2949 4.1379
13 1 6.4250 -4.7768 5.0622
14 6 8.2004 -5.4402 4.0387
15 7 8.8112 -4.1139 3.9217
16 6 10.1714 -3.9930 3.8195
17 1 10.7938 -4.8756 3.8247
18 6 10.7501 -2.7362 3.7081
19 7 9.9915 -1.6607 3.7011
20 14 12.6056 -2.5715 3.5679
21 1 13.2262 -3.9202 3.6005
22 1 12.9476 -1.8994 2.2887
23 1 13.1179 -1.7638 4.7039
24 6 6.0342 -6.6817 4.1345
25 6 5.0335 -6.9973 5.2480
26 6 6.4209 -7.6439 5.2595
27 6 5.6013 -2.5843 0.8135
28 6 5.0202 -1.8935 -0.2301
29 7 3.8582 -1.2877 -0.0798
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 -0.0005
33 1 1.8933 -0.5138 -0.8899
34 1 1.6767 1.9563 -0.8900
35 1 1.6767 1.9564 0.8900
36 1 3.1300 1.4424 0.0005
37 1 3.1711 -2.0038 3.1004
38 1 7.3058 -4.5516 1.2192
39 1 6.5335 -6.0964 1.6496
40 1 5.5503 -4.7579 1.0094
41 1 8.5771 -5.9361 4.9333
42 1 8.4520 -6.0349 3.1605
43 1 8.2521 -3.3212 3.9166
44 1 10.3959 -0.7824 3.6229
45 1 5.8433 -7.1090 3.1501
46 1 4.8352 -6.2169 5.9826
47 1 4.1844 -7.6327 4.9962
48 1 6.4839 -8.7044 5.0152
49 1 7.1360 -7.2892 6.0017
50 1 6.5536 -3.0761 0.6810
51 1 5.5243 -1.8483 -1.1842
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001277719153.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:49:35
Heat of formation + Delta-G solvation = -6.400286 kcal
Electronic energy + Delta-G solvation = -31260.248261 eV
Core-core repulsion = 27161.123944 eV
Total energy + Delta-G solvation = -4099.124317 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.10479 -41.03597 -39.30079 -38.64545 -36.63763 -35.91763 -34.27123 -33.89147
-32.96020 -31.30052 -29.83470 -28.16667 -28.02105 -26.49555 -25.46075 -24.41734
-23.79320 -22.91928 -22.74617 -21.35352 -20.54750 -19.42536 -19.14515 -18.42264
-17.68543 -17.28216 -17.12269 -16.71708 -16.56161 -16.34375 -15.98659 -15.56127
-15.42542 -15.21202 -15.02393 -14.80620 -14.68983 -14.63634 -14.24990 -13.98015
-13.75569 -13.36481 -13.29212 -13.18789 -13.14155 -12.93416 -12.87304 -12.76709
-12.61295 -12.40975 -12.22275 -12.05672 -11.93326 -11.78729 -11.76897 -11.49368
-11.21665 -11.01666 -10.98015 -10.90557 -10.57224 -9.68910 -9.55556 -8.99978
-7.92584 -5.23116 -0.32947 0.07051 1.45934 1.47629 1.57455 1.59052
1.72192 2.09534 2.55036 2.65791 2.88466 3.18739 3.36389 3.40390
3.59929 3.86148 3.87549 3.96100 3.97626 4.01074 4.03647 4.08917
4.12628 4.28402 4.28800 4.31608 4.40995 4.53465 4.56302 4.67782
4.69047 4.69880 4.78974 4.82148 4.84552 4.87326 4.89309 4.93098
5.01560 5.04667 5.08217 5.19494 5.23876 5.26839 5.29162 5.34224
5.48693 5.58367 6.20534 6.25383 6.28013 6.70079 6.98955 7.33106
8.08535 8.32064 9.30280
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009357 B = 0.003229 C = 0.002577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2991.660133 B = 8669.757877 C =10862.475985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.073 3.927
3 C -0.166 4.166
4 O -0.313 6.313
5 C 0.317 3.683
6 C -0.158 4.158
7 C -0.050 4.050
8 C 0.553 3.447
9 O -0.575 6.575
10 N -0.580 5.580
11 C 0.069 3.931
12 C 0.169 3.831
13 H 0.065 0.935
14 C 0.149 3.851
15 N -0.742 5.742
16 C -0.239 4.239
17 H 0.080 0.920
18 C -0.076 4.076
19 N -0.969 5.969
20 Si 0.973 3.027
21 H -0.263 1.263
22 H -0.292 1.292
23 H -0.300 1.300
24 C -0.166 4.166
25 C -0.175 4.175
26 C -0.158 4.158
27 C -0.181 4.181
28 C 0.147 3.853
29 N -0.529 5.529
30 H 0.064 0.936
31 H 0.101 0.899
32 H 0.062 0.938
33 H 0.089 0.911
34 H 0.095 0.905
35 H 0.059 0.941
36 H 0.042 0.958
37 H 0.137 0.863
38 H 0.058 0.942
39 H 0.098 0.902
40 H 0.092 0.908
41 H 0.030 0.970
42 H 0.041 0.959
43 H 0.371 0.629
44 H 0.248 0.752
45 H 0.130 0.870
46 H 0.076 0.924
47 H 0.115 0.885
48 H 0.122 0.878
49 H 0.085 0.915
50 H 0.161 0.839
51 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.114 -6.882 -11.756 22.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.018 3.982
3 C -0.224 4.224
4 O -0.221 6.221
5 C 0.139 3.861
6 C -0.179 4.179
7 C -0.061 4.061
8 C 0.342 3.658
9 O -0.455 6.455
10 N -0.310 5.310
11 C -0.072 4.072
12 C 0.066 3.934
13 H 0.083 0.917
14 C 0.022 3.978
15 N -0.385 5.385
16 C -0.371 4.371
17 H 0.098 0.902
18 C -0.268 4.268
19 N -0.620 5.620
20 Si 0.803 3.197
21 H -0.187 1.187
22 H -0.219 1.219
23 H -0.228 1.228
24 C -0.185 4.185
25 C -0.212 4.212
26 C -0.196 4.196
27 C -0.201 4.201
28 C -0.008 4.008
29 N -0.253 5.253
30 H 0.083 0.917
31 H 0.119 0.881
32 H 0.081 0.919
33 H 0.107 0.893
34 H 0.113 0.887
35 H 0.078 0.922
36 H 0.061 0.939
37 H 0.155 0.845
38 H 0.077 0.923
39 H 0.116 0.884
40 H 0.111 0.889
41 H 0.048 0.952
42 H 0.059 0.941
43 H 0.202 0.798
44 H 0.057 0.943
45 H 0.148 0.852
46 H 0.094 0.906
47 H 0.134 0.866
48 H 0.141 0.859
49 H 0.104 0.896
50 H 0.178 0.822
51 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -18.547 -6.284 -11.652 22.787
hybrid contribution 1.489 0.636 1.063 1.937
sum -17.058 -5.648 -10.589 20.856
Atomic orbital electron populations
1.21921 0.90880 1.03324 1.04099 1.22643 0.95916 0.92726 0.86952
1.22214 1.00983 0.95532 1.03633 1.86301 1.31100 1.64458 1.40276
1.19552 0.86764 0.90392 0.89418 1.20974 0.96707 1.00903 0.99344
1.19985 0.94584 0.97331 0.94160 1.18549 0.78252 0.81016 0.87991
1.90759 1.61533 1.67199 1.26008 1.47541 1.53813 1.20886 1.08751
1.22332 1.02049 1.01871 0.80977 1.20765 0.93024 0.90831 0.88796
0.91672 1.21103 0.90293 0.87515 0.98883 1.42542 1.03957 1.03376
1.88614 1.19660 0.84442 0.92576 1.40434 0.90238 1.25580 1.02093
0.95274 1.03844 1.69889 1.35388 0.97398 1.59281 0.85074 0.80349
0.77794 0.76520 1.18678 1.21866 1.22761 1.22455 1.04749 0.94398
0.96866 1.23060 0.94074 1.03416 1.00637 1.23020 0.97673 0.99032
0.99864 1.22730 1.02622 1.02701 0.92091 1.22978 0.88796 0.89115
0.99914 1.67222 1.11194 1.22902 1.24011 0.91733 0.88068 0.91879
0.89332 0.88672 0.92195 0.93911 0.84468 0.92322 0.88376 0.88926
0.95211 0.94144 0.79776 0.94331 0.85174 0.90574 0.86633 0.85937
0.89628 0.82193 0.77890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.00 9.56 71.98 0.69 -1.31 16
2 C 0.07 1.43 3.11 30.59 0.10 1.53 16
3 C -0.17 -3.05 9.53 71.98 0.69 -2.36 16
4 O -0.31 -8.34 9.76 -90.02 -0.88 -9.22 16
5 C 0.32 9.13 7.45 84.80 0.63 9.76 16
6 C -0.16 -5.04 9.68 22.75 0.22 -4.82 16
7 C -0.05 -1.64 5.28 -19.90 -0.11 -1.75 16
8 C 0.55 21.60 7.11 86.88 0.62 22.22 16
9 O -0.57 -27.68 16.27 -3.75 -0.06 -27.74 16
10 N -0.58 -19.28 2.24 -825.67 -1.85 -21.14 16
11 C 0.07 1.68 7.96 127.77 1.02 2.69 16
12 C 0.17 5.82 2.41 44.99 0.11 5.93 16
13 H 0.07 2.73 6.67 -2.39 -0.02 2.71 16
14 C 0.15 5.89 5.32 86.38 0.46 6.35 16
15 N -0.74 -38.54 5.43 -343.45 -1.87 -40.41 16
16 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16
17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16
18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16
19 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16
20 Si 0.97 46.63 29.55 68.60 2.03 48.65 16
21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16
22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16
23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16
24 C -0.17 -4.04 5.12 -10.79 -0.06 -4.10 16
25 C -0.17 -3.92 10.18 30.62 0.31 -3.61 16
26 C -0.16 -3.38 9.80 30.62 0.30 -3.08 16
27 C -0.18 -4.87 7.68 22.63 0.17 -4.70 16
28 C 0.15 3.33 11.17 84.62 0.94 4.27 16
29 N -0.53 -13.58 8.61 -309.14 -2.66 -16.24 16
30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16
32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.09 1.74 6.98 -2.39 -0.02 1.73 16
34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
37 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16
38 H 0.06 1.60 6.88 -2.39 -0.02 1.58 16
39 H 0.10 1.87 6.50 -2.39 -0.02 1.85 16
40 H 0.09 1.84 5.84 -2.38 -0.01 1.82 16
41 H 0.03 1.19 7.48 -2.39 -0.02 1.17 16
42 H 0.04 1.48 7.84 -2.38 -0.02 1.46 16
43 H 0.37 21.53 7.06 -92.71 -0.65 20.87 16
44 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16
45 H 0.13 2.57 6.66 -2.39 -0.02 2.56 16
46 H 0.08 2.01 8.05 -2.39 -0.02 1.99 16
47 H 0.12 2.03 8.14 -2.39 -0.02 2.02 16
48 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16
49 H 0.09 2.07 7.67 -2.39 -0.02 2.06 16
50 H 0.16 4.12 5.28 -2.91 -0.02 4.10 16
51 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16
Total: -1.00 -77.55 413.41 2.68 -74.87
By element:
Atomic # 1 Polarization: 41.49 SS G_CDS: 0.29 Total: 41.77 kcal
Atomic # 6 Polarization: 3.13 SS G_CDS: 7.40 Total: 10.53 kcal
Atomic # 7 Polarization: -132.77 SS G_CDS: -6.10 Total: -138.87 kcal
Atomic # 8 Polarization: -36.01 SS G_CDS: -0.94 Total: -36.95 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal
Total: -77.55 2.68 -74.87 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277719153.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.469 kcal
(2) G-P(sol) polarization free energy of solvation -77.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.400 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds