Wall clock time and date at job start Wed Apr 1 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47671 * 2 1 4 4 O 1.42897 * 109.46972 * 120.00232 * 2 1 3 5 5 C 1.35689 * 117.00333 * 89.99564 * 4 2 1 6 6 C 1.38895 * 119.62626 * 179.97438 * 5 4 2 7 7 C 1.39565 * 118.94579 * 180.02562 * 6 5 4 8 8 C 1.48167 * 120.88925 * 180.02562 * 7 6 5 9 9 O 1.21507 * 120.00340 * 9.19953 * 8 7 6 10 10 N 1.34777 * 120.00046 * 189.20271 * 8 7 6 11 11 C 1.47424 * 125.64907 * 6.65742 * 10 8 7 12 12 C 1.54909 * 104.83293 * 155.83750 * 11 10 8 13 13 C 1.55150 * 101.57940 * 37.01514 * 12 11 10 14 14 C 1.47019 * 125.65124 * 186.62146 * 10 8 7 15 15 H 1.08999 * 109.88172 * 300.67024 * 14 10 8 16 16 C 1.53003 * 109.88310 * 61.67205 * 14 10 8 17 17 N 1.46497 * 109.47253 * 305.26018 * 16 14 10 18 18 C 1.46503 * 119.99712 * 277.61277 * 17 16 14 19 19 C 1.36934 * 120.00234 * 97.61410 * 17 16 14 20 20 H 1.08000 * 120.00222 * 336.67087 * 19 17 16 21 21 C 1.38810 * 119.99987 * 156.95358 * 19 17 16 22 22 N 1.31619 * 120.00287 * 358.04600 * 21 19 17 23 23 Si 1.86810 * 119.99806 * 178.05206 * 21 19 17 24 24 H 1.48495 * 109.47126 * 59.99687 * 23 21 19 25 25 H 1.48506 * 109.46884 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46978 * 299.99499 * 23 21 19 27 27 C 1.39968 * 118.22148 * 0.27321 * 7 6 5 28 28 C 1.37982 * 119.13029 * 359.48220 * 27 7 6 29 29 N 1.31915 * 120.97682 * 0.52930 * 28 27 7 30 30 H 1.08995 * 109.46978 * 300.00136 * 1 2 3 31 31 H 1.09000 * 109.46492 * 59.99686 * 1 2 3 32 32 H 1.08991 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46978 * 239.99864 * 2 1 3 34 34 H 1.09000 * 109.47317 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47052 * 300.00134 * 3 2 1 36 36 H 1.09007 * 109.46622 * 59.99920 * 3 2 1 37 37 H 1.07998 * 120.52195 * 359.97438 * 6 5 4 38 38 H 1.09006 * 110.36675 * 274.68323 * 11 10 8 39 39 H 1.09008 * 110.36600 * 36.88759 * 11 10 8 40 40 H 1.09002 * 110.99851 * 155.08336 * 12 11 10 41 41 H 1.08997 * 111.00560 * 278.93310 * 12 11 10 42 42 H 1.09004 * 110.72146 * 206.13377 * 13 12 11 43 43 H 1.09005 * 110.72659 * 82.86104 * 13 12 11 44 44 H 1.08996 * 109.47308 * 185.25408 * 16 14 10 45 45 H 1.09006 * 109.46908 * 65.25443 * 16 14 10 46 46 H 1.09004 * 109.47097 * 272.41213 * 18 17 16 47 47 H 1.08991 * 109.47064 * 32.41291 * 18 17 16 48 48 H 1.08999 * 109.46846 * 152.41494 * 18 17 16 49 49 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 50 50 H 1.07998 * 120.43674 * 179.70222 * 27 7 6 51 51 H 1.07993 * 119.51348 * 180.24972 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 -2.0111 1.0653 6 6 2.6745 -2.7202 2.1662 7 6 2.8812 -4.0952 2.0459 8 6 3.3735 -4.8936 3.1928 9 8 3.4440 -4.3915 4.2970 10 7 3.7432 -6.1769 3.0113 11 6 3.8407 -6.8675 1.7124 12 6 4.8486 -8.0196 1.9505 13 6 4.4889 -8.4543 3.3958 14 6 4.1168 -7.1198 4.0756 15 1 4.9715 -6.7328 4.6305 16 6 2.9340 -7.3304 5.0230 17 7 2.4747 -6.0337 5.5267 18 6 3.1585 -5.4038 6.6589 19 6 1.4064 -5.4104 4.9392 20 1 1.1383 -5.6444 3.9195 21 6 0.6713 -4.4734 5.6523 22 7 0.9774 -4.2121 6.9055 23 14 -0.7524 -3.5833 4.8335 24 1 -1.7665 -4.5736 4.3910 25 1 -1.3700 -2.6417 5.8016 26 1 -0.2526 -2.8273 3.6571 27 6 2.6160 -4.6988 0.8112 28 6 2.1534 -3.9217 -0.2309 29 7 1.9695 -2.6241 -0.0805 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8901 37 1 2.8722 -2.2153 3.1002 38 1 2.8692 -7.2673 1.4215 39 1 4.2143 -6.1864 0.9477 40 1 4.6843 -8.8343 1.2452 41 1 5.8754 -7.6581 1.8952 42 1 5.3487 -8.9105 3.8866 43 1 3.6384 -9.1361 3.3932 44 1 3.2455 -7.9556 5.8597 45 1 2.1214 -7.8202 4.4863 46 1 2.7196 -5.7585 7.5915 47 1 4.2169 -5.6628 6.6338 48 1 3.0476 -4.3214 6.5938 49 1 0.4635 -3.5576 7.4040 50 1 2.7681 -5.7596 0.6769 51 1 1.9429 -4.3817 -1.1850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281965472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:00 Heat of formation + Delta-G solvation = 42.884077 kcal Electronic energy + Delta-G solvation = -33052.733029 eV Core-core repulsion = 28955.745842 eV Total energy + Delta-G solvation = -4096.987187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65974 -39.57769 -37.95090 -36.65013 -35.06141 -33.28427 -32.51602 -31.31604 -30.98029 -29.89501 -28.90606 -27.31461 -25.71383 -25.34878 -24.65107 -23.19116 -22.63025 -21.48998 -20.81226 -20.35560 -18.94799 -17.92559 -16.91723 -16.80474 -15.88391 -15.72623 -15.59529 -15.26823 -14.83415 -14.66806 -14.28782 -14.09467 -13.74053 -13.60208 -13.48884 -13.13924 -12.98196 -12.93648 -12.79964 -12.37128 -12.34505 -12.02680 -11.99419 -11.88907 -11.71300 -11.51133 -11.19067 -10.98566 -10.81113 -10.74139 -10.67892 -10.62308 -10.50294 -10.35042 -9.88096 -9.81193 -9.64895 -9.53013 -9.43251 -8.82245 -8.38919 -8.26179 -7.81788 -6.28860 -5.49739 -2.89841 1.16653 1.40340 3.06795 3.46787 3.52217 3.52727 3.58024 3.70942 4.31142 4.41837 4.62775 4.72219 4.77228 4.83662 4.94378 5.03066 5.07006 5.17855 5.21541 5.36691 5.41598 5.46755 5.48838 5.55429 5.65812 5.68074 5.70817 5.75544 5.78495 5.82581 5.95233 5.97961 5.98741 6.07079 6.09951 6.15398 6.17479 6.25696 6.36444 6.43235 6.54907 6.62192 6.87102 7.14049 7.14613 7.46059 7.78850 7.86391 8.00862 8.18242 8.30187 8.68293 9.19600 9.48361 10.12528 10.60451 11.54630 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.004819 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.532327 B = 5808.600073 C = 7646.554452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.300 6.300 5 C 0.317 3.683 6 C -0.133 4.133 7 C -0.023 4.023 8 C 0.553 3.447 9 O -0.428 6.428 10 N -0.607 5.607 11 C 0.092 3.908 12 C -0.133 4.133 13 C -0.126 4.126 14 C 0.117 3.883 15 H 0.063 0.937 16 C 0.141 3.859 17 N -0.586 5.586 18 C 0.183 3.817 19 C -0.211 4.211 20 H 0.053 0.947 21 C 0.008 3.992 22 N -0.906 5.906 23 Si 0.886 3.114 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.283 1.283 27 C -0.219 4.219 28 C 0.126 3.874 29 N -0.539 5.539 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.150 0.850 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.048 0.952 46 H 0.000 1.000 47 H -0.022 1.022 48 H 0.075 0.925 49 H 0.248 0.752 50 H 0.161 0.839 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -1.418 -16.529 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 C -0.207 4.207 4 O -0.208 6.208 5 C 0.139 3.861 6 C -0.154 4.154 7 C -0.034 4.034 8 C 0.339 3.661 9 O -0.296 6.296 10 N -0.346 5.346 11 C -0.032 4.032 12 C -0.171 4.171 13 C -0.165 4.165 14 C 0.011 3.989 15 H 0.081 0.919 16 C 0.012 3.988 17 N -0.308 5.308 18 C 0.039 3.961 19 C -0.341 4.341 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.553 5.553 23 Si 0.717 3.283 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.209 1.209 27 C -0.239 4.239 28 C -0.029 4.029 29 N -0.264 5.264 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.019 0.981 47 H -0.003 1.003 48 H 0.093 0.907 49 H 0.059 0.941 50 H 0.178 0.822 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.119 -0.163 -16.156 17.277 hybrid contribution -0.864 -0.014 -0.066 0.866 sum 5.256 -0.177 -16.223 17.054 Atomic orbital electron populations 1.22220 0.95139 1.02992 1.02343 1.22283 0.94307 0.92667 0.88185 1.21902 1.01902 0.94107 1.02820 1.86327 1.80226 1.15994 1.38274 1.19593 0.92321 0.84571 0.89629 1.21132 1.02165 0.93228 0.98913 1.20346 0.95737 0.93110 0.94178 1.17179 0.80790 0.80695 0.87448 1.90930 1.46791 1.68726 1.23128 1.47931 1.70064 1.10136 1.06451 1.22632 0.98490 0.94316 0.87748 1.22781 0.99256 0.97786 0.97324 1.22658 1.01521 0.97091 0.95230 1.22486 0.99836 0.87121 0.89497 0.91910 1.21091 0.93923 0.89263 0.94515 1.43703 1.33905 1.16346 1.36813 1.20666 0.88206 0.99787 0.87464 1.18797 1.02853 1.18013 0.94419 0.92946 1.24811 0.98057 1.00716 0.95342 1.70038 1.40806 1.36222 1.08239 0.86596 0.83268 0.79706 0.78731 1.21548 1.21657 1.20922 1.23129 1.03857 1.03340 0.93525 1.22245 0.94209 0.87702 0.98735 1.67021 1.21541 1.13065 1.24767 0.91981 0.91332 0.91953 0.89395 0.91876 0.90710 0.91612 0.83190 0.91751 0.90368 0.90482 0.91011 0.90789 0.90694 0.94385 0.93358 0.98131 1.00344 0.90655 0.94131 0.82242 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.53 37.16 0.35 -1.78 16 2 C 0.08 1.09 3.11 -26.73 -0.08 1.00 16 3 C -0.15 -1.55 9.56 37.16 0.36 -1.20 16 4 O -0.30 -5.17 9.76 -18.77 -0.18 -5.35 16 5 C 0.32 5.74 7.45 -17.16 -0.13 5.61 16 6 C -0.13 -2.64 9.61 -38.84 -0.37 -3.01 16 7 C -0.02 -0.43 5.88 -104.68 -0.62 -1.05 16 8 C 0.55 11.57 5.22 -12.18 -0.06 11.50 16 9 O -0.43 -10.81 10.66 5.36 0.06 -10.75 16 10 N -0.61 -10.57 3.06 -164.00 -0.50 -11.07 16 11 C 0.09 1.12 4.92 -2.53 -0.01 1.11 16 12 C -0.13 -1.33 7.08 -24.59 -0.17 -1.51 16 13 C -0.13 -1.50 6.48 -24.90 -0.16 -1.66 16 14 C 0.12 1.99 3.31 -66.95 -0.22 1.76 16 15 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 16 C 0.14 2.90 5.34 -4.04 -0.02 2.88 16 17 N -0.59 -15.09 1.70 -181.12 -0.31 -15.40 16 18 C 0.18 4.91 7.61 59.85 0.46 5.37 16 19 C -0.21 -5.88 6.00 -15.06 -0.09 -5.97 16 20 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 21 C 0.01 0.23 5.28 -17.43 -0.09 0.14 16 22 N -0.91 -27.79 10.22 55.49 0.57 -27.23 16 23 Si 0.89 23.47 29.55 -169.99 -5.02 18.45 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 26 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 27 C -0.22 -3.24 8.39 -39.03 -0.33 -3.57 16 28 C 0.13 1.73 11.17 -17.61 -0.20 1.54 16 29 N -0.54 -8.64 8.61 -13.38 -0.12 -8.75 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.15 6.98 -51.93 -0.36 0.79 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.15 3.22 7.77 -52.49 -0.41 2.81 16 38 H 0.06 0.75 7.34 -51.93 -0.38 0.37 16 39 H 0.08 0.86 6.03 -51.92 -0.31 0.55 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.85 7.76 -51.93 -0.40 0.45 16 44 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.05 0.99 7.85 -51.93 -0.41 0.58 16 46 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 47 H -0.02 -0.54 8.06 -51.93 -0.42 -0.96 16 48 H 0.07 2.26 5.79 -51.93 -0.30 1.96 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.16 1.93 3.50 -52.49 -0.18 1.75 16 51 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -34.64 392.73 -9.15 -43.79 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.16 Total: -0.78 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.40 Total: 11.18 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.36 Total: -62.45 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.13 Total: -16.10 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.64 -9.15 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281965472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.673 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds