Wall clock time and date at job start Wed Apr 1 2020 04:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47671 * 2 1 4 4 O 1.42897 * 109.46972 * 120.00232 * 2 1 3 5 5 C 1.35689 * 117.00333 * 89.99564 * 4 2 1 6 6 C 1.38895 * 119.62626 * 179.97438 * 5 4 2 7 7 C 1.39565 * 118.94579 * 180.02562 * 6 5 4 8 8 C 1.48167 * 120.88925 * 180.02562 * 7 6 5 9 9 O 1.21507 * 120.00340 * 9.19953 * 8 7 6 10 10 N 1.34777 * 120.00046 * 189.20271 * 8 7 6 11 11 C 1.47424 * 125.64907 * 6.65742 * 10 8 7 12 12 C 1.54909 * 104.83293 * 155.83750 * 11 10 8 13 13 C 1.55150 * 101.57940 * 37.01514 * 12 11 10 14 14 C 1.47019 * 125.65124 * 186.62146 * 10 8 7 15 15 H 1.08999 * 109.88172 * 300.67024 * 14 10 8 16 16 C 1.53003 * 109.88310 * 61.67205 * 14 10 8 17 17 N 1.46497 * 109.47253 * 305.26018 * 16 14 10 18 18 C 1.46503 * 119.99712 * 277.61277 * 17 16 14 19 19 C 1.36934 * 120.00234 * 97.61410 * 17 16 14 20 20 H 1.08000 * 120.00222 * 336.67087 * 19 17 16 21 21 C 1.38810 * 119.99987 * 156.95358 * 19 17 16 22 22 N 1.31619 * 120.00287 * 358.04600 * 21 19 17 23 23 Si 1.86810 * 119.99806 * 178.05206 * 21 19 17 24 24 H 1.48495 * 109.47126 * 59.99687 * 23 21 19 25 25 H 1.48506 * 109.46884 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46978 * 299.99499 * 23 21 19 27 27 C 1.39968 * 118.22148 * 0.27321 * 7 6 5 28 28 C 1.37982 * 119.13029 * 359.48220 * 27 7 6 29 29 N 1.31915 * 120.97682 * 0.52930 * 28 27 7 30 30 H 1.08995 * 109.46978 * 300.00136 * 1 2 3 31 31 H 1.09000 * 109.46492 * 59.99686 * 1 2 3 32 32 H 1.08991 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46978 * 239.99864 * 2 1 3 34 34 H 1.09000 * 109.47317 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47052 * 300.00134 * 3 2 1 36 36 H 1.09007 * 109.46622 * 59.99920 * 3 2 1 37 37 H 1.07998 * 120.52195 * 359.97438 * 6 5 4 38 38 H 1.09006 * 110.36675 * 274.68323 * 11 10 8 39 39 H 1.09008 * 110.36600 * 36.88759 * 11 10 8 40 40 H 1.09002 * 110.99851 * 155.08336 * 12 11 10 41 41 H 1.08997 * 111.00560 * 278.93310 * 12 11 10 42 42 H 1.09004 * 110.72146 * 206.13377 * 13 12 11 43 43 H 1.09005 * 110.72659 * 82.86104 * 13 12 11 44 44 H 1.08996 * 109.47308 * 185.25408 * 16 14 10 45 45 H 1.09006 * 109.46908 * 65.25443 * 16 14 10 46 46 H 1.09004 * 109.47097 * 272.41213 * 18 17 16 47 47 H 1.08991 * 109.47064 * 32.41291 * 18 17 16 48 48 H 1.08999 * 109.46846 * 152.41494 * 18 17 16 49 49 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 50 50 H 1.07998 * 120.43674 * 179.70222 * 27 7 6 51 51 H 1.07993 * 119.51348 * 180.24972 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 -2.0111 1.0653 6 6 2.6745 -2.7202 2.1662 7 6 2.8812 -4.0952 2.0459 8 6 3.3735 -4.8936 3.1928 9 8 3.4440 -4.3915 4.2970 10 7 3.7432 -6.1769 3.0113 11 6 3.8407 -6.8675 1.7124 12 6 4.8486 -8.0196 1.9505 13 6 4.4889 -8.4543 3.3958 14 6 4.1168 -7.1198 4.0756 15 1 4.9715 -6.7328 4.6305 16 6 2.9340 -7.3304 5.0230 17 7 2.4747 -6.0337 5.5267 18 6 3.1585 -5.4038 6.6589 19 6 1.4064 -5.4104 4.9392 20 1 1.1383 -5.6444 3.9195 21 6 0.6713 -4.4734 5.6523 22 7 0.9774 -4.2121 6.9055 23 14 -0.7524 -3.5833 4.8335 24 1 -1.7665 -4.5736 4.3910 25 1 -1.3700 -2.6417 5.8016 26 1 -0.2526 -2.8273 3.6571 27 6 2.6160 -4.6988 0.8112 28 6 2.1534 -3.9217 -0.2309 29 7 1.9695 -2.6241 -0.0805 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8901 37 1 2.8722 -2.2153 3.1002 38 1 2.8692 -7.2673 1.4215 39 1 4.2143 -6.1864 0.9477 40 1 4.6843 -8.8343 1.2452 41 1 5.8754 -7.6581 1.8952 42 1 5.3487 -8.9105 3.8866 43 1 3.6384 -9.1361 3.3932 44 1 3.2455 -7.9556 5.8597 45 1 2.1214 -7.8202 4.4863 46 1 2.7196 -5.7585 7.5915 47 1 4.2169 -5.6628 6.6338 48 1 3.0476 -4.3214 6.5938 49 1 0.4635 -3.5576 7.4040 50 1 2.7681 -5.7596 0.6769 51 1 1.9429 -4.3817 -1.1850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281965472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:59 Heat of formation + Delta-G solvation = 19.469464 kcal Electronic energy + Delta-G solvation = -33053.748363 eV Core-core repulsion = 28955.745842 eV Total energy + Delta-G solvation = -4098.002521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97959 -40.93377 -39.18847 -38.09818 -36.99642 -34.36728 -33.97511 -33.16039 -32.21174 -31.23144 -30.39743 -28.23351 -27.90598 -26.78633 -26.14335 -24.48422 -23.97395 -22.88527 -22.14383 -21.64514 -20.31259 -19.23747 -18.84033 -18.18194 -17.22754 -17.05133 -16.89680 -16.80493 -16.57004 -16.12567 -15.57683 -15.43164 -15.35450 -15.02724 -14.78728 -14.70423 -14.34603 -14.20575 -13.97457 -13.59547 -13.41929 -13.33165 -13.27747 -13.24445 -13.03588 -12.93391 -12.88023 -12.78949 -12.43498 -12.32960 -12.01353 -11.94436 -11.84508 -11.81699 -11.68219 -11.55931 -11.47128 -10.90049 -10.89337 -10.45998 -10.34493 -9.55757 -9.44671 -8.31328 -7.69914 -5.10787 -0.21596 0.12227 1.29628 1.36090 1.37799 1.84435 2.15598 2.36906 2.50223 2.90908 3.25283 3.46470 3.56652 3.71900 3.85019 3.86046 3.97551 3.98191 4.00224 4.06030 4.18265 4.22621 4.26292 4.38500 4.54403 4.61146 4.62677 4.65266 4.73988 4.76533 4.78562 4.81155 4.83724 4.88554 4.98768 5.05659 5.07707 5.11460 5.14174 5.20236 5.23763 5.28177 5.39766 5.50260 5.53986 5.61302 5.76733 5.97839 6.23928 6.47111 6.74009 6.86478 7.28571 7.65349 8.03184 8.46770 9.34287 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.004819 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.532327 B = 5808.600073 C = 7646.554452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.324 6.324 5 C 0.311 3.689 6 C -0.170 4.170 7 C -0.042 4.042 8 C 0.549 3.451 9 O -0.495 6.495 10 N -0.609 5.609 11 C 0.077 3.923 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.117 3.883 15 H 0.040 0.960 16 C 0.136 3.864 17 N -0.599 5.599 18 C 0.209 3.791 19 C -0.181 4.181 20 H 0.052 0.948 21 C -0.053 4.053 22 N -0.944 5.944 23 Si 0.935 3.065 24 H -0.275 1.275 25 H -0.299 1.299 26 H -0.293 1.293 27 C -0.205 4.205 28 C 0.141 3.859 29 N -0.534 5.534 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.053 0.947 46 H -0.023 1.023 47 H -0.006 1.006 48 H 0.036 0.964 49 H 0.237 0.763 50 H 0.196 0.804 51 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -4.156 -21.572 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 C -0.202 4.202 4 O -0.233 6.233 5 C 0.133 3.867 6 C -0.192 4.192 7 C -0.053 4.053 8 C 0.335 3.665 9 O -0.367 6.367 10 N -0.345 5.345 11 C -0.044 4.044 12 C -0.155 4.155 13 C -0.153 4.153 14 C 0.012 3.988 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.321 5.321 18 C 0.063 3.937 19 C -0.312 4.312 20 H 0.069 0.931 21 C -0.246 4.246 22 N -0.594 5.594 23 Si 0.766 3.234 24 H -0.201 1.201 25 H -0.226 1.226 26 H -0.220 1.220 27 C -0.224 4.224 28 C -0.015 4.015 29 N -0.259 5.259 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.071 0.929 46 H -0.005 1.005 47 H 0.012 0.988 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.212 0.788 51 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.514 -2.966 -21.276 22.447 hybrid contribution -0.841 0.771 1.294 1.725 sum 5.673 -2.195 -19.982 20.887 Atomic orbital electron populations 1.22218 0.94663 1.01951 1.03506 1.22662 0.94792 0.93828 0.87021 1.21930 1.01898 0.92342 1.04048 1.86313 1.80386 1.15951 1.40613 1.19552 0.92423 0.85029 0.89701 1.20996 1.05252 0.94414 0.98493 1.20369 0.97015 0.92569 0.95372 1.17714 0.79614 0.81799 0.87336 1.90922 1.50011 1.70328 1.25452 1.48085 1.68224 1.09196 1.09018 1.23052 1.00567 0.95297 0.85494 1.22791 0.98661 0.97654 0.96444 1.22636 1.02824 0.93739 0.96147 1.22347 0.96968 0.90003 0.89525 0.94176 1.21386 0.95263 0.86850 0.95566 1.43840 1.33636 1.18149 1.36459 1.20177 0.88842 0.97461 0.87181 1.18841 1.01838 1.16798 0.93750 0.93065 1.25350 1.00673 1.02554 0.96017 1.70198 1.42167 1.37576 1.09499 0.85798 0.81518 0.78825 0.77266 1.20149 1.22557 1.22037 1.23523 1.02259 1.05000 0.91647 1.23220 0.91248 0.86683 1.00331 1.67192 1.21115 1.14276 1.23293 0.92995 0.87971 0.94006 0.88860 0.91934 0.87507 0.92273 0.87100 0.89850 0.88537 0.86553 0.90516 0.88824 0.89424 0.93397 0.92893 1.00522 0.98817 0.94498 0.95337 0.78805 0.76983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.53 71.98 0.69 -3.33 16 2 C 0.07 1.87 3.11 30.59 0.10 1.96 16 3 C -0.15 -2.83 9.56 71.98 0.69 -2.14 16 4 O -0.32 -11.58 9.76 -90.08 -0.88 -12.46 16 5 C 0.31 11.45 7.45 84.80 0.63 12.08 16 6 C -0.17 -7.16 9.61 22.75 0.22 -6.94 16 7 C -0.04 -1.61 5.88 -19.90 -0.12 -1.72 16 8 C 0.55 23.41 5.22 86.88 0.45 23.86 16 9 O -0.50 -26.63 10.66 -3.74 -0.04 -26.67 16 10 N -0.61 -20.18 3.06 -791.06 -2.42 -22.61 16 11 C 0.08 1.52 4.92 86.86 0.43 1.95 16 12 C -0.12 -1.66 7.08 31.98 0.23 -1.43 16 13 C -0.11 -2.21 6.48 31.78 0.21 -2.00 16 14 C 0.12 3.80 3.31 45.34 0.15 3.95 16 15 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 16 C 0.14 5.50 5.34 86.38 0.46 5.96 16 17 N -0.60 -31.78 1.70 -726.94 -1.24 -33.02 16 18 C 0.21 11.87 7.61 127.77 0.97 12.84 16 19 C -0.18 -10.43 6.00 84.03 0.50 -9.92 16 20 H 0.05 2.91 7.08 -2.91 -0.02 2.89 16 21 C -0.05 -3.29 5.28 84.86 0.45 -2.84 16 22 N -0.94 -61.69 10.22 21.65 0.22 -61.47 16 23 Si 0.93 50.70 29.55 68.60 2.03 52.73 16 24 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 26 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 27 C -0.21 -5.40 8.39 22.63 0.19 -5.21 16 28 C 0.14 3.28 11.17 84.62 0.94 4.23 16 29 N -0.53 -16.01 8.61 -309.13 -2.66 -18.68 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.28 6.98 -2.39 -0.02 2.26 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.11 5.41 7.77 -2.91 -0.02 5.39 16 38 H 0.08 1.42 7.34 -2.38 -0.02 1.41 16 39 H 0.10 1.60 6.03 -2.38 -0.01 1.59 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.53 7.76 -2.38 -0.02 1.51 16 44 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 45 H 0.05 2.08 7.85 -2.38 -0.02 2.06 16 46 H -0.02 -1.42 7.84 -2.38 -0.02 -1.44 16 47 H -0.01 -0.34 8.06 -2.39 -0.02 -0.36 16 48 H 0.04 2.38 5.79 -2.39 -0.01 2.36 16 49 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 50 H 0.20 3.64 3.50 -2.91 -0.01 3.63 16 51 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -85.50 392.73 3.12 -82.38 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.92 Total: 8.49 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 7.19 Total: 31.29 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -6.10 Total: -135.76 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.92 Total: -39.13 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.03 Total: 52.73 kcal Total: -85.50 3.12 -82.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281965472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.850 kcal (2) G-P(sol) polarization free energy of solvation -85.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds