Wall clock time and date at job start Wed Apr 1 2020 04:54:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.47261 * 2 1
4 4 O 1.42898 * 109.47178 * 180.02562 * 3 2 1
5 5 C 1.35648 * 117.00148 * 180.02562 * 4 3 2
6 6 C 1.39350 * 120.53654 * 0.25118 * 5 4 3
7 7 C 1.38300 * 118.43427 * 180.26499 * 6 5 4
8 8 C 1.38766 * 119.44926 * 359.75054 * 7 6 5
9 9 N 1.31381 * 121.06471 * 359.97438 * 8 7 6
10 10 C 1.32857 * 121.69887 * 0.02562 * 9 8 7
11 11 C 1.47822 * 119.78400 * 179.97438 * 10 9 8
12 12 O 1.21555 * 119.99849 * 142.51460 * 11 10 9
13 13 N 1.34780 * 120.00100 * 322.77980 * 11 10 9
14 14 C 1.46923 * 120.62981 * 0.09387 * 13 11 10
15 15 C 1.53195 * 108.77535 * 233.58288 * 14 13 11
16 16 C 1.53040 * 109.31222 * 305.36626 * 15 14 13
17 17 C 1.53043 * 109.53941 * 61.36353 * 16 15 14
18 18 C 1.46928 * 120.62778 * 179.81091 * 13 11 10
19 19 H 1.09001 * 109.58352 * 246.20509 * 18 13 11
20 20 C 1.53003 * 109.59011 * 6.63012 * 18 13 11
21 21 N 1.46497 * 109.46860 * 287.18654 * 20 18 13
22 22 C 1.36942 * 119.99685 * 172.78883 * 21 20 18
23 23 H 1.08006 * 119.99878 * 0.02562 * 22 21 20
24 24 C 1.38808 * 119.99843 * 179.97438 * 22 21 20
25 25 N 1.31618 * 120.00240 * 0.02562 * 24 22 21
26 26 Si 1.86799 * 120.00065 * 180.02562 * 24 22 21
27 27 H 1.48499 * 109.47116 * 59.99817 * 26 24 22
28 28 H 1.48503 * 109.47387 * 179.97438 * 26 24 22
29 29 H 1.48504 * 109.47252 * 300.00106 * 26 24 22
30 30 H 1.08996 * 109.46956 * 59.99609 * 1 2 3
31 31 H 1.09000 * 109.47252 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.46655 * 299.99940 * 1 2 3
33 33 H 1.09004 * 109.47187 * 240.00089 * 2 1 3
34 34 H 1.08996 * 109.46956 * 120.00391 * 2 1 3
35 35 H 1.08997 * 109.46756 * 60.00221 * 3 2 1
36 36 H 1.08994 * 109.47050 * 300.00422 * 3 2 1
37 37 H 1.07995 * 120.78392 * 0.02562 * 6 5 4
38 38 H 1.08000 * 120.27661 * 179.72678 * 7 6 5
39 39 H 1.08001 * 119.47213 * 179.97438 * 8 7 6
40 40 H 1.09002 * 109.58828 * 353.37143 * 14 13 11
41 41 H 1.08998 * 109.58685 * 113.65239 * 14 13 11
42 42 H 1.09001 * 109.49318 * 65.31690 * 15 14 13
43 43 H 1.08997 * 109.49573 * 185.41658 * 15 14 13
44 44 H 1.08995 * 109.46378 * 181.38868 * 16 15 14
45 45 H 1.09003 * 109.46188 * 301.36126 * 16 15 14
46 46 H 1.08998 * 109.49317 * 58.58357 * 17 16 15
47 47 H 1.08999 * 109.49760 * 178.65258 * 17 16 15
48 48 H 1.09001 * 109.47068 * 47.18579 * 20 18 13
49 49 H 1.08999 * 109.46790 * 167.18642 * 20 18 13
50 50 H 0.97003 * 120.00283 * 352.79531 * 21 20 18
51 51 H 0.97002 * 120.00050 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 3.4690 1.4425 -0.0006
5 6 4.0849 2.6511 -0.0001
6 6 3.3370 3.8268 0.0061
7 6 4.0097 5.0352 0.0007
8 6 5.3973 5.0436 -0.0054
9 7 6.0820 3.9223 -0.0057
10 6 5.4811 2.7374 -0.0006
11 6 6.2932 1.5023 -0.0017
12 8 5.9320 0.5368 0.6425
13 7 7.4370 1.4484 -0.7127
14 6 7.8907 2.6097 -1.4900
15 6 8.1403 2.1685 -2.9356
16 6 9.1139 0.9878 -2.9434
17 6 8.4997 -0.1872 -2.1790
18 6 8.2569 0.2292 -0.7203
19 1 9.2103 0.4270 -0.2304
20 6 7.5196 -0.8895 0.0186
21 7 7.5391 -0.6192 1.4583
22 6 6.8138 -1.4063 2.3125
23 1 6.2277 -2.2265 1.9249
24 6 6.8327 -1.1506 3.6767
25 7 7.5473 -0.1513 4.1492
26 14 5.8439 -2.2246 4.8421
27 1 6.3090 -3.6307 4.7342
28 1 6.0322 -1.7470 6.2356
29 1 4.4048 -2.1503 4.4831
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3632 0.5138 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 1.6768 1.9562 0.8900
36 1 1.6767 1.9563 -0.8899
37 1 2.2575 3.7952 0.0111
38 1 3.4596 5.9646 0.0009
39 1 5.9230 5.9870 -0.0101
40 1 7.1237 3.3840 -1.4715
41 1 8.8134 2.9993 -1.0600
42 1 7.1977 1.8658 -3.3915
43 1 8.5686 2.9969 -3.4999
44 1 9.3125 0.6876 -3.9722
45 1 10.0475 1.2836 -2.4648
46 1 7.5536 -0.4677 -2.6421
47 1 9.1834 -1.0357 -2.2054
48 1 6.4874 -0.9354 -0.3285
49 1 8.0121 -1.8415 -0.1791
50 1 8.0657 0.1173 1.8064
51 1 7.5608 0.0271 5.1025
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317193062.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:42
Heat of formation + Delta-G solvation = -4.005346 kcal
Electronic energy + Delta-G solvation = -32845.415904 eV
Core-core repulsion = 28746.395439 eV
Total energy + Delta-G solvation = -4099.020465 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.07753 -40.80812 -39.35205 -38.03256 -36.33645 -34.96446 -34.11691 -33.58903
-32.85661 -31.48162 -31.36571 -27.76943 -27.63494 -26.16769 -25.14290 -24.36154
-24.04612 -22.95716 -22.40606 -21.60104 -20.53359 -19.19815 -18.97865 -18.14422
-17.82188 -17.41435 -16.72670 -16.65479 -16.46823 -16.01736 -15.57025 -15.45045
-15.32029 -15.12553 -15.01229 -14.92776 -14.68142 -14.42508 -14.16036 -13.85011
-13.68282 -13.53584 -13.47778 -13.12347 -13.06398 -12.92936 -12.76632 -12.72490
-12.53433 -12.19682 -12.06210 -11.97630 -11.83114 -11.73641 -11.69006 -11.51297
-11.36273 -10.86037 -10.74443 -10.61365 -9.82937 -9.46545 -9.31467 -8.62296
-7.81508 -5.00969 -0.17580 0.25309 1.38550 1.44633 1.49754 2.01078
2.06458 2.18339 2.61733 2.79245 3.35374 3.51303 3.63526 3.70166
3.83153 3.85208 3.87114 3.93991 4.04119 4.07763 4.16761 4.19229
4.20083 4.35555 4.40979 4.45679 4.47323 4.48159 4.57666 4.64542
4.72025 4.89163 4.92343 4.93842 5.02655 5.03712 5.06758 5.10400
5.11769 5.12430 5.17676 5.24169 5.26927 5.31691 5.50260 5.51232
5.53909 5.93165 6.27097 6.38770 6.67073 6.85666 7.43870 7.60482
8.22559 8.46855 9.43776
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.006482 B = 0.005708 C = 0.003900
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4318.377976 B = 4904.483866 C = 7177.030593
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.126 4.126
3 C 0.050 3.950
4 O -0.318 6.318
5 C 0.109 3.891
6 C -0.172 4.172
7 C -0.097 4.097
8 C 0.047 3.953
9 N -0.437 5.437
10 C 0.022 3.978
11 C 0.527 3.473
12 O -0.481 6.481
13 N -0.600 5.600
14 C 0.104 3.896
15 C -0.127 4.127
16 C -0.111 4.111
17 C -0.117 4.117
18 C 0.145 3.855
19 H 0.058 0.942
20 C 0.164 3.836
21 N -0.704 5.704
22 C -0.189 4.189
23 H 0.057 0.943
24 C -0.091 4.091
25 N -0.979 5.979
26 Si 0.965 3.035
27 H -0.276 1.276
28 H -0.295 1.295
29 H -0.290 1.290
30 H 0.076 0.924
31 H 0.067 0.933
32 H 0.063 0.937
33 H 0.065 0.935
34 H 0.045 0.955
35 H 0.070 0.930
36 H 0.091 0.909
37 H 0.173 0.827
38 H 0.189 0.811
39 H 0.199 0.801
40 H 0.103 0.897
41 H 0.061 0.939
42 H 0.055 0.945
43 H 0.099 0.901
44 H 0.087 0.913
45 H 0.068 0.932
46 H 0.059 0.941
47 H 0.084 0.916
48 H 0.028 0.972
49 H 0.011 0.989
50 H 0.364 0.636
51 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.591 13.686 -19.251 25.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.164 4.164
3 C -0.024 4.024
4 O -0.230 6.230
5 C 0.059 3.941
6 C -0.198 4.198
7 C -0.116 4.116
8 C -0.114 4.114
9 N -0.149 5.149
10 C -0.115 4.115
11 C 0.312 3.688
12 O -0.352 6.352
13 N -0.336 5.336
14 C -0.018 4.018
15 C -0.165 4.165
16 C -0.149 4.149
17 C -0.156 4.156
18 C 0.042 3.958
19 H 0.076 0.924
20 C 0.037 3.963
21 N -0.344 5.344
22 C -0.322 4.322
23 H 0.075 0.925
24 C -0.281 4.281
25 N -0.634 5.634
26 Si 0.795 3.205
27 H -0.202 1.202
28 H -0.221 1.221
29 H -0.217 1.217
30 H 0.095 0.905
31 H 0.087 0.913
32 H 0.082 0.918
33 H 0.084 0.916
34 H 0.064 0.936
35 H 0.089 0.911
36 H 0.109 0.891
37 H 0.190 0.810
38 H 0.206 0.794
39 H 0.215 0.785
40 H 0.120 0.880
41 H 0.080 0.920
42 H 0.074 0.926
43 H 0.117 0.883
44 H 0.106 0.894
45 H 0.087 0.913
46 H 0.078 0.922
47 H 0.103 0.897
48 H 0.046 0.954
49 H 0.028 0.972
50 H 0.195 0.805
51 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -8.950 12.719 -18.862 24.447
hybrid contribution -1.181 -0.403 1.488 1.942
sum -10.131 12.316 -17.374 23.583
Atomic orbital electron populations
1.21638 0.91441 1.03252 1.03177 1.21501 0.98046 0.94475 1.02364
1.23216 0.76727 0.99747 1.02698 1.86285 1.23267 1.26428 1.87015
1.20228 0.92203 0.86627 0.95001 1.22101 1.02222 0.90968 1.04496
1.22644 0.95313 0.99289 0.94345 1.23498 0.92716 0.96570 0.98630
1.67773 1.40188 0.97591 1.09386 1.20711 0.89532 0.93131 1.08112
1.18346 0.82409 0.87323 0.80688 1.91228 1.69186 1.35274 1.39482
1.47792 1.21954 1.14822 1.49008 1.22122 1.01103 0.87657 0.90916
1.21931 0.99791 0.99402 0.95401 1.21498 0.98330 0.94109 1.00952
1.21927 1.01609 0.99624 0.92434 1.21506 0.92942 0.84275 0.97099
0.92399 1.20933 0.97106 0.94015 0.84221 1.42280 1.54910 1.35805
1.01426 1.19310 1.18247 1.06168 0.88428 0.92476 1.25346 1.03475
1.00954 0.98320 1.69830 1.47859 1.33933 1.11739 0.85302 0.78396
0.78655 0.78102 1.20227 1.22087 1.21736 0.90479 0.91348 0.91766
0.91639 0.93648 0.91137 0.89135 0.80967 0.79368 0.78471 0.87972
0.92045 0.92646 0.88298 0.89426 0.91347 0.92230 0.89703 0.95406
0.97157 0.80548 0.94887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.30 9.91 71.98 0.71 -1.59 16
2 C -0.13 -3.20 6.30 30.60 0.19 -3.01 16
3 C 0.05 1.26 4.76 71.98 0.34 1.61 16
4 O -0.32 -11.80 8.84 -73.41 -0.65 -12.45 16
5 C 0.11 3.71 6.67 22.94 0.15 3.86 16
6 C -0.17 -3.81 9.13 22.55 0.21 -3.60 16
7 C -0.10 -1.63 10.10 22.41 0.23 -1.40 16
8 C 0.05 1.00 11.17 84.89 0.95 1.94 16
9 N -0.44 -13.87 7.25 -184.63 -1.34 -15.21 16
10 C 0.02 0.85 6.01 41.93 0.25 1.10 16
11 C 0.53 24.13 7.08 86.78 0.61 24.74 16
12 O -0.48 -26.86 9.39 12.34 0.12 -26.75 16
13 N -0.60 -23.00 2.97 -797.61 -2.37 -25.37 16
14 C 0.10 3.00 5.94 86.36 0.51 3.51 16
15 C -0.13 -2.72 6.08 30.67 0.19 -2.54 16
16 C -0.11 -2.34 5.88 30.62 0.18 -2.16 16
17 C -0.12 -3.27 5.37 30.82 0.17 -3.11 16
18 C 0.15 5.58 2.93 45.12 0.13 5.71 16
19 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
20 C 0.16 7.96 4.90 86.38 0.42 8.38 16
21 N -0.70 -41.92 3.43 -343.45 -1.18 -43.10 16
22 C -0.19 -12.19 9.07 84.03 0.76 -11.43 16
23 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16
24 C -0.09 -5.96 5.50 84.86 0.47 -5.50 16
25 N -0.98 -67.56 13.06 21.65 0.28 -67.27 16
26 Si 0.96 52.56 29.55 68.60 2.03 54.58 16
27 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16
28 H -0.29 -15.87 7.11 99.48 0.71 -15.16 16
29 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16
30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16
34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
35 H 0.07 1.58 7.68 -2.39 -0.02 1.56 16
36 H 0.09 1.62 7.71 -2.39 -0.02 1.60 16
37 H 0.17 2.57 6.46 -2.91 -0.02 2.55 16
38 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16
39 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16
40 H 0.10 2.93 4.66 -2.39 -0.01 2.92 16
41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
44 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16
45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16
47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16
48 H 0.03 1.49 6.22 -2.39 -0.01 1.48 16
49 H 0.01 0.51 8.10 -2.39 -0.02 0.49 16
50 H 0.36 23.32 7.68 -92.71 -0.71 22.61 16
51 H 0.24 16.23 8.31 -92.71 -0.77 15.46 16
Total: -1.00 -90.57 399.24 3.59 -86.98
By element:
Atomic # 1 Polarization: 31.85 SS G_CDS: 0.22 Total: 32.07 kcal
Atomic # 6 Polarization: 10.04 SS G_CDS: 6.48 Total: 16.52 kcal
Atomic # 7 Polarization: -146.35 SS G_CDS: -4.60 Total: -150.95 kcal
Atomic # 8 Polarization: -38.66 SS G_CDS: -0.53 Total: -39.20 kcal
Atomic # 14 Polarization: 52.56 SS G_CDS: 2.03 Total: 54.58 kcal
Total: -90.57 3.59 -86.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317193062.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.974 kcal
(2) G-P(sol) polarization free energy of solvation -90.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.592 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.005 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds