Wall clock time and date at job start Wed Apr 1 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35747 * 116.99776 * 2 1 4 4 C 1.39213 * 120.81771 * 359.97438 * 3 2 1 5 5 C 1.38306 * 119.28958 * 180.02562 * 4 3 2 6 6 N 1.31614 * 120.97273 * 359.72015 * 5 4 3 7 7 C 1.32797 * 121.77665 * 0.57016 * 6 5 4 8 8 C 1.48192 * 119.69316 * 179.70905 * 7 6 5 9 9 O 1.21514 * 119.99326 * 179.72874 * 8 7 6 10 10 N 1.34775 * 119.99955 * 359.72631 * 8 7 6 11 11 C 1.46498 * 119.99331 * 185.14224 * 10 8 7 12 12 C 1.52997 * 109.47394 * 298.81638 * 11 10 8 13 13 N 1.46500 * 109.47370 * 304.93638 * 12 11 10 14 14 C 1.36940 * 119.99903 * 184.73764 * 13 12 11 15 15 H 1.07994 * 119.99899 * 353.59125 * 14 13 12 16 16 C 1.38805 * 119.99479 * 173.59509 * 14 13 12 17 17 N 1.31627 * 119.99733 * 178.17163 * 16 14 13 18 18 Si 1.86796 * 120.00606 * 358.17039 * 16 14 13 19 19 H 1.48507 * 109.47347 * 84.83777 * 18 16 14 20 20 H 1.48498 * 109.47580 * 204.84156 * 18 16 14 21 21 H 1.48500 * 109.46932 * 324.84099 * 18 16 14 22 22 C 1.52999 * 109.47445 * 58.82166 * 11 10 8 23 23 C 1.53003 * 109.46982 * 59.99812 * 22 11 10 24 24 C 1.52998 * 109.47242 * 60.00053 * 23 22 11 25 25 C 1.52999 * 109.47089 * 299.99882 * 24 23 22 26 26 C 1.52997 * 109.47255 * 60.00383 * 25 24 23 27 27 H 1.08996 * 109.47764 * 179.97438 * 26 25 24 28 28 C 1.53001 * 109.47493 * 59.99562 * 26 25 24 29 29 C 1.39097 * 120.60773 * 359.43088 * 7 6 5 30 30 H 1.09003 * 109.47580 * 300.00013 * 1 2 3 31 31 H 1.09003 * 109.47144 * 60.00012 * 1 2 3 32 32 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.35333 * 0.04443 * 4 3 2 34 34 H 1.08006 * 119.51192 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00547 * 5.14025 * 10 8 7 36 36 H 1.09004 * 109.46749 * 64.93837 * 12 11 10 37 37 H 1.09003 * 109.47274 * 184.93420 * 12 11 10 38 38 H 0.97000 * 119.99546 * 4.73716 * 13 12 11 39 39 H 0.97008 * 119.99948 * 180.02562 * 17 16 14 40 40 H 1.08990 * 109.47251 * 299.99601 * 22 11 10 41 41 H 1.08998 * 109.47217 * 179.97438 * 22 11 10 42 42 H 1.09000 * 109.46788 * 179.97438 * 23 22 11 43 43 H 1.08998 * 109.46866 * 299.99873 * 23 22 11 44 44 H 1.09007 * 109.47211 * 60.00251 * 24 23 22 45 45 H 1.09007 * 109.46965 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47080 * 299.99762 * 25 24 23 47 47 H 1.09005 * 109.46896 * 179.97438 * 25 24 23 48 48 H 1.09003 * 109.47291 * 300.00826 * 28 26 25 49 49 H 1.08998 * 109.47064 * 59.99875 * 28 26 25 50 50 H 1.08994 * 109.47299 * 180.02562 * 28 26 25 51 51 H 1.07996 * 120.51265 * 180.29767 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2791 3.6591 0.0045 7 6 4.0260 2.5611 -0.0005 8 6 5.5033 2.6782 -0.0005 9 8 6.1920 1.6771 0.0000 10 7 6.0828 3.8950 -0.0010 11 6 7.5386 4.0127 -0.1147 12 6 8.2013 3.3131 1.0737 13 7 7.6679 3.8618 2.3230 14 6 8.1845 3.4561 3.5246 15 1 8.9112 2.6580 3.5581 16 6 7.7738 4.0708 4.6994 17 7 8.2431 3.6570 5.8575 18 14 6.5553 5.4852 4.6372 19 1 5.1721 4.9458 4.5996 20 1 6.7222 6.3359 5.8428 21 1 6.8026 6.2984 3.4195 22 6 8.0033 3.3569 -1.4165 23 6 7.3407 4.0567 -2.6049 24 6 7.7338 5.5353 -2.6100 25 6 7.2691 6.1911 -1.3082 26 6 7.9318 5.4915 -0.1198 27 1 7.6012 5.9589 0.8077 28 6 9.4522 5.6145 -0.2385 29 6 3.4345 1.3022 0.0001 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2242 2.3532 -0.0002 34 1 1.3924 4.5192 -0.0019 35 1 5.5361 4.6927 0.0739 36 1 7.9930 2.2441 1.0281 37 1 9.2785 3.4753 1.0363 38 1 6.9488 4.5123 2.2989 39 1 7.9558 4.0863 6.6786 40 1 7.7233 2.3036 -1.4129 41 1 9.0864 3.4450 -1.5013 42 1 7.6721 3.5898 -3.5324 43 1 6.2575 3.9690 -2.5203 44 1 8.8170 5.6230 -2.6947 45 1 7.2621 6.0338 -3.4570 46 1 6.1860 6.1035 -1.2237 47 1 7.5496 7.2445 -1.3117 48 1 9.7833 5.1473 -1.1660 49 1 9.7323 6.6678 -0.2423 50 1 9.9243 5.1156 0.6079 51 1 4.0434 0.4102 0.0008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318746170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:19 Heat of formation + Delta-G solvation = -24.366155 kcal Electronic energy + Delta-G solvation = -32529.005973 eV Core-core repulsion = 28429.102597 eV Total energy + Delta-G solvation = -4099.903376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09020 -40.40239 -38.70653 -37.66134 -34.79564 -33.39867 -32.00244 -31.78713 -31.69868 -30.92012 -29.87073 -27.97571 -26.69440 -25.22597 -24.18414 -23.54567 -22.63941 -22.09771 -20.80058 -20.26792 -18.74936 -18.25151 -17.61623 -17.41483 -16.55599 -16.21351 -15.91308 -15.47805 -15.35114 -14.98212 -14.91410 -14.43116 -14.32920 -14.12644 -13.97611 -13.57717 -13.45966 -13.20188 -12.89897 -12.76090 -12.66458 -12.42176 -12.06136 -11.92038 -11.82188 -11.72298 -11.62524 -11.49173 -11.21925 -10.98293 -10.82756 -10.72580 -10.36284 -10.23352 -10.06110 -9.88316 -9.81478 -9.49385 -9.42496 -9.34059 -9.14006 -8.70177 -8.56399 -7.05021 -5.66684 -2.99834 0.54620 1.10447 2.69555 2.89559 3.38584 3.42349 3.45301 3.49523 3.87201 4.12321 4.34805 4.57601 4.67814 4.71842 4.74619 4.77216 4.86324 4.89636 4.92475 5.07282 5.12326 5.24629 5.28167 5.42924 5.48318 5.52649 5.58368 5.63203 5.66912 5.78259 5.79949 5.81818 5.86474 5.94796 6.03686 6.11370 6.17936 6.19018 6.22643 6.27917 6.41439 6.49017 6.54497 6.63082 6.67355 6.87458 6.95470 7.09825 7.59538 7.91412 8.12877 8.49917 8.53517 9.33108 10.05483 10.26910 11.52332 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.004535 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.087257 B = 6172.053757 C = 8188.692681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.162 3.838 4 C -0.248 4.248 5 C 0.135 3.865 6 N -0.482 5.482 7 C 0.123 3.877 8 C 0.576 3.424 9 O -0.516 6.516 10 N -0.692 5.692 11 C 0.176 3.824 12 C 0.143 3.857 13 N -0.747 5.747 14 C -0.232 4.232 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.937 5.937 18 Si 0.878 3.122 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.277 1.277 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.091 4.091 27 H 0.080 0.920 28 C -0.146 4.146 29 C -0.143 4.143 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.405 0.595 36 H 0.050 0.950 37 H 0.039 0.961 38 H 0.356 0.644 39 H 0.257 0.743 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.071 0.929 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 1.018 -19.871 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.108 3.892 4 C -0.269 4.269 5 C -0.024 4.024 6 N -0.197 5.197 7 C -0.014 4.014 8 C 0.360 3.640 9 O -0.391 6.391 10 N -0.343 5.343 11 C 0.091 3.909 12 C 0.015 3.985 13 N -0.392 5.392 14 C -0.362 4.362 15 H 0.107 0.893 16 C -0.192 4.192 17 N -0.586 5.586 18 Si 0.709 3.291 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.203 1.203 22 C -0.168 4.168 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.110 4.110 27 H 0.099 0.901 28 C -0.204 4.204 29 C -0.165 4.165 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.241 0.759 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.188 0.812 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.090 0.910 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.799 0.752 -19.718 23.519 hybrid contribution -2.166 0.752 0.370 2.322 sum -14.965 1.504 -19.347 24.505 Atomic orbital electron populations 1.23160 0.77685 1.04514 1.01652 1.86105 1.21921 1.26017 1.87798 1.19201 0.92149 0.84785 0.93017 1.22364 1.01662 0.93254 1.09665 1.22552 0.89763 0.97119 0.92988 1.67621 1.07266 1.31383 1.13456 1.21163 0.94842 0.88503 0.96892 1.17584 0.85211 0.84131 0.77077 1.90751 1.62739 1.36627 1.48998 1.45786 1.07824 1.07963 1.72722 1.20699 0.78818 0.95507 0.95902 1.21192 0.95839 0.97512 0.83911 1.42481 1.42916 1.51919 1.01881 1.19063 1.20027 1.14403 0.82685 0.89332 1.24644 1.00004 0.99309 0.95280 1.69706 1.47792 1.44235 0.96847 0.86649 0.81959 0.83710 0.76828 1.21360 1.21913 1.20267 1.21914 1.00698 1.01218 0.92958 1.21460 1.00660 0.95236 0.97784 1.21558 1.01231 0.95726 0.97042 1.21611 1.00102 0.99108 0.94584 1.21271 0.97085 0.93813 0.98813 0.90135 1.21935 0.94297 1.01573 1.02573 1.21421 0.91927 0.99961 1.03187 0.92211 0.92321 0.87733 0.84047 0.81911 0.75881 0.93213 0.94322 0.81173 0.93274 0.89886 0.90721 0.92468 0.92304 0.91654 0.92656 0.92117 0.91963 0.92293 0.92855 0.91032 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.36 10.51 -18.95 -0.20 -3.56 16 3 C 0.16 1.96 6.73 -38.85 -0.26 1.70 16 4 C -0.25 -2.43 9.11 -39.19 -0.36 -2.79 16 5 C 0.14 1.44 11.17 -17.62 -0.20 1.25 16 6 N -0.48 -6.70 9.55 -9.87 -0.09 -6.79 16 7 C 0.12 1.93 6.75 -83.04 -0.56 1.37 16 8 C 0.58 10.14 7.22 -12.17 -0.09 10.05 16 9 O -0.52 -10.31 12.61 5.35 0.07 -10.24 16 10 N -0.69 -11.22 3.39 -48.43 -0.16 -11.39 16 11 C 0.18 2.85 0.10 -131.82 -0.01 2.83 16 12 C 0.14 2.97 4.66 -4.04 -0.02 2.96 16 13 N -0.75 -18.39 4.91 -59.91 -0.29 -18.69 16 14 C -0.23 -6.82 10.47 -15.06 -0.16 -6.98 16 15 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 16 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 17 N -0.94 -30.39 13.97 55.49 0.78 -29.62 16 18 Si 0.88 22.91 27.50 -169.99 -4.67 18.24 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 21 H -0.28 -6.75 6.88 56.52 0.39 -6.36 16 22 C -0.13 -1.84 4.23 -26.73 -0.11 -1.95 16 23 C -0.11 -1.35 5.77 -26.73 -0.15 -1.51 16 24 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 25 C -0.12 -1.37 5.28 -26.73 -0.14 -1.51 16 26 C -0.09 -1.33 2.17 -90.61 -0.20 -1.52 16 27 H 0.08 1.38 7.28 -51.93 -0.38 1.00 16 28 C -0.15 -2.01 8.15 37.16 0.30 -1.70 16 29 C -0.14 -2.09 9.60 -38.89 -0.37 -2.46 16 30 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 31 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.14 0.90 6.45 -52.48 -0.34 0.56 16 34 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.41 6.15 6.70 -40.82 -0.27 5.87 16 36 H 0.05 1.16 6.24 -51.93 -0.32 0.83 16 37 H 0.04 0.80 6.18 -51.93 -0.32 0.48 16 38 H 0.36 8.59 4.72 -40.82 -0.19 8.39 16 39 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 40 H 0.08 1.34 6.26 -51.93 -0.33 1.01 16 41 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 44 H 0.06 0.67 6.43 -51.92 -0.33 0.34 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.71 6.89 -51.93 -0.36 0.35 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.14 6.32 -51.93 -0.33 0.81 16 51 H 0.16 2.33 7.64 -52.49 -0.40 1.93 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -35.31 386.41 -7.80 -43.11 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -7.46 Total: 13.66 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.58 Total: -0.55 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.22 Total: -66.48 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.13 Total: -13.80 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.31 -7.80 -43.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318746170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.745 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds