Wall clock time and date at job start Wed Apr 1 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35747 * 116.99776 * 2 1 4 4 C 1.39213 * 120.81771 * 359.97438 * 3 2 1 5 5 C 1.38306 * 119.28958 * 180.02562 * 4 3 2 6 6 N 1.31614 * 120.97273 * 359.72015 * 5 4 3 7 7 C 1.32797 * 121.77665 * 0.57016 * 6 5 4 8 8 C 1.48192 * 119.69316 * 179.70905 * 7 6 5 9 9 O 1.21514 * 119.99326 * 179.72874 * 8 7 6 10 10 N 1.34775 * 119.99955 * 359.72631 * 8 7 6 11 11 C 1.46498 * 119.99331 * 185.14224 * 10 8 7 12 12 C 1.52997 * 109.47394 * 298.81638 * 11 10 8 13 13 N 1.46500 * 109.47370 * 304.93638 * 12 11 10 14 14 C 1.36940 * 119.99903 * 184.73764 * 13 12 11 15 15 H 1.07994 * 119.99899 * 353.59125 * 14 13 12 16 16 C 1.38805 * 119.99479 * 173.59509 * 14 13 12 17 17 N 1.31627 * 119.99733 * 178.17163 * 16 14 13 18 18 Si 1.86796 * 120.00606 * 358.17039 * 16 14 13 19 19 H 1.48507 * 109.47347 * 84.83777 * 18 16 14 20 20 H 1.48498 * 109.47580 * 204.84156 * 18 16 14 21 21 H 1.48500 * 109.46932 * 324.84099 * 18 16 14 22 22 C 1.52999 * 109.47445 * 58.82166 * 11 10 8 23 23 C 1.53003 * 109.46982 * 59.99812 * 22 11 10 24 24 C 1.52998 * 109.47242 * 60.00053 * 23 22 11 25 25 C 1.52999 * 109.47089 * 299.99882 * 24 23 22 26 26 C 1.52997 * 109.47255 * 60.00383 * 25 24 23 27 27 H 1.08996 * 109.47764 * 179.97438 * 26 25 24 28 28 C 1.53001 * 109.47493 * 59.99562 * 26 25 24 29 29 C 1.39097 * 120.60773 * 359.43088 * 7 6 5 30 30 H 1.09003 * 109.47580 * 300.00013 * 1 2 3 31 31 H 1.09003 * 109.47144 * 60.00012 * 1 2 3 32 32 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.35333 * 0.04443 * 4 3 2 34 34 H 1.08006 * 119.51192 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00547 * 5.14025 * 10 8 7 36 36 H 1.09004 * 109.46749 * 64.93837 * 12 11 10 37 37 H 1.09003 * 109.47274 * 184.93420 * 12 11 10 38 38 H 0.97000 * 119.99546 * 4.73716 * 13 12 11 39 39 H 0.97008 * 119.99948 * 180.02562 * 17 16 14 40 40 H 1.08990 * 109.47251 * 299.99601 * 22 11 10 41 41 H 1.08998 * 109.47217 * 179.97438 * 22 11 10 42 42 H 1.09000 * 109.46788 * 179.97438 * 23 22 11 43 43 H 1.08998 * 109.46866 * 299.99873 * 23 22 11 44 44 H 1.09007 * 109.47211 * 60.00251 * 24 23 22 45 45 H 1.09007 * 109.46965 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47080 * 299.99762 * 25 24 23 47 47 H 1.09005 * 109.46896 * 179.97438 * 25 24 23 48 48 H 1.09003 * 109.47291 * 300.00826 * 28 26 25 49 49 H 1.08998 * 109.47064 * 59.99875 * 28 26 25 50 50 H 1.08994 * 109.47299 * 180.02562 * 28 26 25 51 51 H 1.07996 * 120.51265 * 180.29767 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2791 3.6591 0.0045 7 6 4.0260 2.5611 -0.0005 8 6 5.5033 2.6782 -0.0005 9 8 6.1920 1.6771 0.0000 10 7 6.0828 3.8950 -0.0010 11 6 7.5386 4.0127 -0.1147 12 6 8.2013 3.3131 1.0737 13 7 7.6679 3.8618 2.3230 14 6 8.1845 3.4561 3.5246 15 1 8.9112 2.6580 3.5581 16 6 7.7738 4.0708 4.6994 17 7 8.2431 3.6570 5.8575 18 14 6.5553 5.4852 4.6372 19 1 5.1721 4.9458 4.5996 20 1 6.7222 6.3359 5.8428 21 1 6.8026 6.2984 3.4195 22 6 8.0033 3.3569 -1.4165 23 6 7.3407 4.0567 -2.6049 24 6 7.7338 5.5353 -2.6100 25 6 7.2691 6.1911 -1.3082 26 6 7.9318 5.4915 -0.1198 27 1 7.6012 5.9589 0.8077 28 6 9.4522 5.6145 -0.2385 29 6 3.4345 1.3022 0.0001 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2242 2.3532 -0.0002 34 1 1.3924 4.5192 -0.0019 35 1 5.5361 4.6927 0.0739 36 1 7.9930 2.2441 1.0281 37 1 9.2785 3.4753 1.0363 38 1 6.9488 4.5123 2.2989 39 1 7.9558 4.0863 6.6786 40 1 7.7233 2.3036 -1.4129 41 1 9.0864 3.4450 -1.5013 42 1 7.6721 3.5898 -3.5324 43 1 6.2575 3.9690 -2.5203 44 1 8.8170 5.6230 -2.6947 45 1 7.2621 6.0338 -3.4570 46 1 6.1860 6.1035 -1.2237 47 1 7.5496 7.2445 -1.3117 48 1 9.7833 5.1473 -1.1660 49 1 9.7323 6.6678 -0.2423 50 1 9.9243 5.1156 0.6079 51 1 4.0434 0.4102 0.0008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318746170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:18 Heat of formation + Delta-G solvation = -49.435703 kcal Electronic energy + Delta-G solvation = -32530.093070 eV Core-core repulsion = 28429.102597 eV Total energy + Delta-G solvation = -4100.990473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.21100 -41.45150 -39.68350 -38.79319 -36.59757 -34.87433 -33.65740 -32.80423 -32.67673 -32.41653 -31.23250 -28.59647 -28.00640 -26.79378 -25.20711 -24.44416 -24.32911 -23.36701 -22.10290 -21.45918 -19.98442 -19.73028 -19.29335 -18.37945 -17.56065 -16.95915 -16.90971 -16.71984 -16.62836 -16.40084 -16.25477 -15.92676 -15.50330 -15.29420 -15.14201 -14.80287 -14.75550 -14.49570 -14.32290 -14.16261 -13.82009 -13.57595 -13.37158 -13.27227 -13.02284 -12.86481 -12.82659 -12.55978 -12.41298 -12.38220 -12.33384 -12.14887 -11.91859 -11.82464 -11.44846 -11.24633 -11.00132 -10.93208 -10.86566 -10.51780 -10.38584 -10.02069 -9.92554 -9.23718 -8.04434 -5.36391 -0.46618 0.18619 1.30606 1.34860 1.42667 1.72244 1.83562 2.30457 2.45170 2.79739 3.09419 3.26839 3.52131 3.56257 3.72620 3.78518 3.80259 3.90617 3.95744 4.12382 4.20467 4.30640 4.34246 4.35857 4.44715 4.46701 4.49348 4.54701 4.67468 4.69485 4.72435 4.78379 4.81926 4.88100 4.89980 4.97798 5.12737 5.13772 5.17944 5.22437 5.29224 5.33801 5.40736 5.45403 5.49795 5.58175 5.70881 5.74950 6.12238 6.19054 6.46826 6.78434 7.06101 7.20636 7.81780 8.03987 9.17763 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.004535 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.087257 B = 6172.053757 C = 8188.692681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.329 6.329 3 C 0.158 3.842 4 C -0.228 4.228 5 C 0.134 3.866 6 N -0.495 5.495 7 C 0.100 3.900 8 C 0.569 3.431 9 O -0.554 6.554 10 N -0.685 5.685 11 C 0.183 3.817 12 C 0.143 3.857 13 N -0.742 5.742 14 C -0.229 4.229 15 H 0.048 0.952 16 C -0.062 4.062 17 N -0.984 5.984 18 Si 0.950 3.050 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.247 1.247 22 C -0.124 4.124 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.088 4.088 27 H 0.057 0.943 28 C -0.144 4.144 29 C -0.167 4.167 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.185 0.815 34 H 0.206 0.794 35 H 0.412 0.588 36 H 0.019 0.981 37 H 0.038 0.962 38 H 0.362 0.638 39 H 0.257 0.743 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.039 0.961 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.254 4.046 -22.404 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.105 3.895 4 C -0.248 4.248 5 C -0.025 4.025 6 N -0.211 5.211 7 C -0.036 4.036 8 C 0.354 3.646 9 O -0.432 6.432 10 N -0.336 5.336 11 C 0.097 3.903 12 C 0.016 3.984 13 N -0.387 5.387 14 C -0.360 4.360 15 H 0.066 0.934 16 C -0.253 4.253 17 N -0.635 5.635 18 Si 0.776 3.224 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.171 1.171 22 C -0.163 4.163 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.108 4.108 27 H 0.075 0.925 28 C -0.201 4.201 29 C -0.189 4.189 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.202 0.798 34 H 0.222 0.778 35 H 0.249 0.751 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.195 0.805 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.059 0.941 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.075 3.793 -22.303 27.752 hybrid contribution -1.219 -0.375 1.172 1.732 sum -17.294 3.418 -21.130 27.518 Atomic orbital electron populations 1.23549 0.75015 1.06331 1.03224 1.86093 1.24675 1.25713 1.87519 1.19254 0.91357 0.86251 0.92683 1.22794 1.03587 0.91711 1.06708 1.23323 0.88783 0.99150 0.91257 1.67601 1.08874 1.30444 1.14173 1.20821 0.93788 0.89528 0.99503 1.18050 0.86428 0.83896 0.76251 1.90725 1.63978 1.37796 1.50735 1.45752 1.07751 1.07910 1.72194 1.20605 0.78647 0.96594 0.94410 1.21250 0.96298 0.96277 0.84601 1.42361 1.42902 1.51832 1.01591 1.18994 1.18981 1.13182 0.84859 0.93415 1.25470 1.02622 1.02597 0.94592 1.69898 1.49873 1.46063 0.97686 0.85501 0.78844 0.80077 0.77945 1.20962 1.21744 1.17150 1.21855 1.01455 0.99880 0.93104 1.21419 0.99806 0.96354 0.96886 1.21546 1.02024 0.94269 0.97118 1.21589 0.99930 0.99795 0.93445 1.21257 0.97935 0.92144 0.99417 0.92487 1.21920 0.93419 1.02627 1.02184 1.21369 0.93577 0.99041 1.04947 0.90929 0.90239 0.86088 0.79791 0.77755 0.75072 0.96325 0.94380 0.80527 0.93379 0.92495 0.89793 0.90946 0.93188 0.90698 0.90404 0.91890 0.90041 0.90381 0.90979 0.94141 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -6.81 10.51 -90.71 -0.95 -7.77 16 3 C 0.16 3.68 6.73 22.75 0.15 3.83 16 4 C -0.23 -3.66 9.11 22.52 0.21 -3.46 16 5 C 0.13 2.40 11.17 84.74 0.95 3.35 16 6 N -0.50 -13.03 9.55 -185.14 -1.77 -14.80 16 7 C 0.10 3.20 6.75 41.85 0.28 3.48 16 8 C 0.57 21.00 7.22 86.89 0.63 21.63 16 9 O -0.55 -24.06 12.61 -3.76 -0.05 -24.11 16 10 N -0.69 -22.49 3.39 -425.42 -1.44 -23.93 16 11 C 0.18 6.00 0.10 3.61 0.00 6.00 16 12 C 0.14 6.27 4.66 86.38 0.40 6.68 16 13 N -0.74 -37.80 4.91 -343.45 -1.68 -39.49 16 14 C -0.23 -14.14 10.47 84.03 0.88 -13.26 16 15 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 16 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 17 N -0.98 -66.12 13.97 21.65 0.30 -65.82 16 18 Si 0.95 47.72 27.50 68.60 1.89 49.61 16 19 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.25 -11.14 6.88 99.48 0.68 -10.46 16 22 C -0.12 -3.55 4.23 30.59 0.13 -3.42 16 23 C -0.11 -2.35 5.77 30.59 0.18 -2.17 16 24 C -0.11 -1.98 5.65 30.59 0.17 -1.81 16 25 C -0.11 -2.23 5.28 30.59 0.16 -2.07 16 26 C -0.09 -2.46 2.17 -10.79 -0.02 -2.49 16 27 H 0.06 1.87 7.28 -2.39 -0.02 1.85 16 28 C -0.14 -3.75 8.15 71.98 0.59 -3.16 16 29 C -0.17 -5.10 9.60 22.72 0.22 -4.88 16 30 H 0.07 0.50 7.71 -2.39 -0.02 0.49 16 31 H 0.08 0.42 7.71 -2.39 -0.02 0.40 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.18 1.32 6.45 -2.91 -0.02 1.30 16 34 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.41 12.19 6.70 -92.71 -0.62 11.57 16 36 H 0.02 0.95 6.24 -2.38 -0.01 0.93 16 37 H 0.04 1.68 6.18 -2.39 -0.01 1.67 16 38 H 0.36 17.52 4.72 -92.71 -0.44 17.08 16 39 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 40 H 0.06 1.94 6.26 -2.39 -0.01 1.93 16 41 H 0.08 2.19 6.43 -2.39 -0.02 2.18 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 44 H 0.07 1.22 6.43 -2.38 -0.02 1.21 16 45 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.06 1.27 6.89 -2.39 -0.02 1.25 16 47 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.08 1.70 4.81 -2.39 -0.01 1.69 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.04 1.29 6.32 -2.39 -0.02 1.28 16 51 H 0.13 4.50 7.64 -2.91 -0.02 4.48 16 Total: -1.00 -83.20 386.41 2.69 -80.51 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.11 Total: 39.69 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.50 Total: 6.09 kcal Atomic # 7 Polarization: -139.44 SS G_CDS: -4.59 Total: -144.03 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.00 Total: -31.88 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.89 Total: 49.61 kcal Total: -83.20 2.69 -80.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318746170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.079 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds