Wall clock time and date at job start Wed Apr 1 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47221 * 2 1 4 4 O 1.42907 * 109.47009 * 120.00134 * 2 1 3 5 5 C 1.35688 * 117.00091 * 89.99523 * 4 2 1 6 6 C 1.38892 * 119.62215 * 179.72552 * 5 4 2 7 7 C 1.39563 * 118.94870 * 180.28050 * 6 5 4 8 8 C 1.48160 * 120.89679 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99789 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00312 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46876 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.46817 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.88349 * 302.56898 * 13 12 11 15 15 C 1.55153 * 111.00231 * 178.64586 * 13 12 11 16 16 C 1.54322 * 102.94004 * 206.42098 * 15 13 12 17 17 N 1.47017 * 107.27483 * 22.19614 * 16 15 13 18 18 C 1.36930 * 125.65286 * 181.01782 * 17 16 15 19 19 H 1.07999 * 120.00423 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00018 * 0.04837 * 18 17 16 21 21 N 1.31622 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 89.99748 * 22 20 18 24 24 H 1.48502 * 109.46772 * 209.99474 * 22 20 18 25 25 H 1.48498 * 109.47262 * 329.99694 * 22 20 18 26 26 C 1.47430 * 108.69996 * 1.05896 * 17 16 15 27 27 C 1.39978 * 118.21433 * 359.97438 * 7 6 5 28 28 C 1.37970 * 119.13278 * 0.02562 * 27 7 6 29 29 N 1.31905 * 120.98004 * 0.02562 * 28 27 7 30 30 H 1.09006 * 109.47085 * 300.00253 * 1 2 3 31 31 H 1.08997 * 109.46927 * 59.99704 * 1 2 3 32 32 H 1.08996 * 109.47604 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46648 * 239.99588 * 2 1 3 34 34 H 1.09005 * 109.47262 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47412 * 299.99999 * 3 2 1 36 36 H 1.09001 * 109.47646 * 60.00199 * 3 2 1 37 37 H 1.08008 * 120.52841 * 0.27492 * 6 5 4 38 38 H 0.97004 * 120.00041 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.46723 * 299.99858 * 11 10 8 40 40 H 1.09000 * 109.46732 * 59.99817 * 11 10 8 41 41 H 1.09002 * 109.47227 * 299.99425 * 12 11 10 42 42 H 1.08992 * 109.47403 * 59.99686 * 12 11 10 43 43 H 1.08997 * 110.72159 * 324.78747 * 15 13 12 44 44 H 1.08999 * 110.72046 * 88.06444 * 15 13 12 45 45 H 1.09000 * 109.88385 * 262.77432 * 16 15 13 46 46 H 1.09005 * 110.01141 * 141.68825 * 16 15 13 47 47 H 0.97001 * 120.00162 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.36532 * 217.03456 * 26 17 16 49 49 H 1.09003 * 110.46185 * 94.75460 * 26 17 16 50 50 H 1.08001 * 120.42804 * 179.97438 * 27 7 6 51 51 H 1.07998 * 119.50916 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 -2.0111 1.0653 6 6 2.6795 -2.7193 2.1647 7 6 2.8912 -4.0933 2.0430 8 6 3.3900 -4.8907 3.1878 9 8 3.6199 -4.3491 4.2510 10 7 3.5886 -6.2165 3.0501 11 6 4.0812 -7.0050 4.1823 12 6 4.2187 -8.4698 3.7623 13 6 4.7338 -9.2931 4.9447 14 1 5.6855 -8.9024 5.3049 15 6 4.8545 -10.7931 4.5671 16 6 4.6975 -11.5055 5.9271 17 7 3.9941 -10.5792 6.8264 18 6 3.6766 -10.8247 8.1356 19 1 3.1559 -10.0763 8.7145 20 6 4.0243 -12.0354 8.7189 21 7 4.6588 -12.9476 8.0134 22 14 3.5917 -12.3699 10.5051 23 1 2.2505 -13.0031 10.5793 24 1 4.6032 -13.2822 11.0967 25 1 3.5776 -11.0906 11.2590 26 6 3.6865 -9.3427 6.0850 27 6 2.6198 -4.6981 0.8101 28 6 2.1571 -3.9209 -0.2319 29 7 1.9696 -2.6241 -0.0804 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.8764 -2.2146 3.0991 38 1 3.4047 -6.6489 2.2014 39 1 5.0536 -6.6241 4.4946 40 1 3.3778 -6.9288 5.0115 41 1 3.2465 -8.8510 3.4498 42 1 4.9223 -8.5456 2.9333 43 1 4.0562 -11.0845 3.8847 44 1 5.8314 -11.0039 4.1320 45 1 5.6792 -11.7451 6.3356 46 1 4.1142 -12.4182 5.8049 47 1 4.9021 -13.7935 8.4211 48 1 3.7922 -8.4742 6.7352 49 1 2.6784 -9.3865 5.6725 50 1 2.7714 -5.7590 0.6760 51 1 1.9454 -4.3813 -1.1856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481455090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:45 Heat of formation + Delta-G solvation = -22.301841 kcal Electronic energy + Delta-G solvation = -29188.237950 eV Core-core repulsion = 25088.424090 eV Total energy + Delta-G solvation = -4099.813860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27385 -39.86073 -38.43486 -37.79476 -35.39230 -33.76686 -33.34954 -32.78134 -30.94855 -30.43075 -29.00578 -27.71871 -26.87625 -25.37675 -24.42490 -23.77117 -22.59430 -21.94188 -20.75903 -19.98923 -19.64898 -18.91004 -17.61200 -17.01104 -16.69367 -16.17231 -16.12557 -15.81162 -15.70814 -15.01912 -14.82900 -14.72813 -14.52710 -14.27904 -14.03637 -13.83676 -13.62314 -13.48395 -12.80725 -12.75942 -12.53952 -12.39780 -12.37181 -12.28306 -11.97548 -11.83345 -11.57381 -11.40932 -11.25172 -11.11755 -10.86624 -10.75475 -10.53361 -10.33325 -10.13152 -10.05560 -9.96379 -9.84270 -9.75844 -9.60392 -9.24014 -8.96525 -8.56859 -6.79179 -5.68091 -3.01103 0.30200 0.70232 2.43682 2.59938 2.94104 3.42364 3.43364 3.47477 3.49415 3.80070 4.19071 4.40269 4.49172 4.51611 4.53006 4.55250 4.61982 4.79562 4.87735 5.06433 5.09717 5.20448 5.23891 5.28969 5.30633 5.33462 5.38702 5.49586 5.58893 5.61932 5.64634 5.65489 5.72880 5.73747 5.84793 5.90668 5.99977 6.07142 6.18453 6.27977 6.38568 6.55748 6.60033 6.74223 6.83650 6.97884 7.20983 7.34995 7.59908 7.65967 7.86038 7.90392 8.29923 9.26034 9.86526 10.52767 11.43716 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.001530 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.483466 B =18292.498331 C =18943.191987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 C -0.152 4.152 4 O -0.299 6.299 5 C 0.324 3.676 6 C -0.134 4.134 7 C -0.049 4.049 8 C 0.554 3.446 9 O -0.523 6.523 10 N -0.718 5.718 11 C 0.116 3.884 12 C -0.116 4.116 13 C -0.101 4.101 14 H 0.076 0.924 15 C -0.138 4.138 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.139 3.861 27 C -0.184 4.184 28 C 0.139 3.861 29 N -0.528 5.528 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.155 0.845 38 H 0.400 0.600 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.037 0.963 49 H 0.017 0.983 50 H 0.143 0.857 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 22.547 -23.307 32.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.206 6.206 5 C 0.145 3.855 6 C -0.156 4.156 7 C -0.059 4.059 8 C 0.340 3.660 9 O -0.399 6.399 10 N -0.369 5.369 11 C -0.006 4.006 12 C -0.154 4.154 13 C -0.121 4.121 14 H 0.095 0.905 15 C -0.176 4.176 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.013 3.987 27 C -0.205 4.205 28 C -0.016 4.016 29 N -0.253 5.253 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.172 0.828 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.035 0.965 50 H 0.160 0.840 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.797 23.430 -22.805 33.046 hybrid contribution -0.117 -1.069 0.981 1.456 sum -4.914 22.361 -21.823 31.629 Atomic orbital electron populations 1.22224 0.94750 1.02952 1.02736 1.22384 0.94491 0.92851 0.87769 1.21917 1.02085 0.93770 1.03116 1.86335 1.79940 1.15520 1.38809 1.19641 0.91579 0.84978 0.89339 1.21156 1.01987 0.92846 0.99614 1.20174 0.98017 0.93513 0.94240 1.18071 0.78411 0.82259 0.87300 1.90823 1.50453 1.70923 1.27724 1.45970 1.67057 1.07616 1.16286 1.21600 1.00300 0.90471 0.88274 1.21752 1.01908 0.92785 0.99004 1.22274 0.99786 0.95303 0.94712 0.90529 1.22896 1.00134 0.94602 0.99990 1.21139 0.97238 0.91620 0.84852 1.44481 1.67295 1.12816 1.08691 1.19082 1.31186 0.99805 0.85477 0.90473 1.24797 1.00815 0.96601 0.98347 1.69971 1.44943 1.07160 1.35026 0.86124 0.77530 0.77734 0.84431 1.21656 1.21686 1.20689 1.21612 0.94618 0.90543 0.91923 1.22163 1.03325 1.01799 0.93235 1.22372 0.92961 0.87461 0.98830 1.67142 1.20697 1.12938 1.24494 0.91868 0.91004 0.91971 0.89194 0.91740 0.90400 0.91496 0.82765 0.76469 0.91015 0.90485 0.91204 0.91561 0.92568 0.92332 0.93711 0.94072 0.93839 0.94437 0.96531 0.83975 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.53 37.16 0.35 -0.72 16 2 C 0.08 0.59 3.11 -26.74 -0.08 0.51 16 3 C -0.15 -0.81 9.56 37.15 0.36 -0.46 16 4 O -0.30 -2.94 9.76 -18.77 -0.18 -3.13 16 5 C 0.32 3.28 7.45 -17.16 -0.13 3.16 16 6 C -0.13 -1.43 9.61 -38.85 -0.37 -1.80 16 7 C -0.05 -0.48 5.91 -104.68 -0.62 -1.10 16 8 C 0.55 6.71 7.80 -12.19 -0.10 6.61 16 9 O -0.52 -8.44 16.44 5.35 0.09 -8.35 16 10 N -0.72 -7.15 5.51 -61.14 -0.34 -7.48 16 11 C 0.12 1.39 5.52 -4.04 -0.02 1.37 16 12 C -0.12 -1.35 4.84 -26.73 -0.13 -1.48 16 13 C -0.10 -1.64 3.07 -88.47 -0.27 -1.91 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.14 -2.45 6.42 -24.90 -0.16 -2.61 16 16 C 0.18 4.27 5.38 -3.07 -0.02 4.26 16 17 N -0.61 -15.65 3.39 -170.07 -0.58 -16.22 16 18 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.42 10.31 55.49 0.57 -26.84 16 22 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.14 2.84 5.89 -2.53 -0.01 2.82 16 27 C -0.18 -1.27 9.61 -39.03 -0.38 -1.64 16 28 C 0.14 0.94 11.17 -17.62 -0.20 0.74 16 29 N -0.53 -4.74 8.61 -13.38 -0.12 -4.85 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.67 6.98 -51.93 -0.36 0.31 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.15 1.71 7.74 -52.48 -0.41 1.31 16 38 H 0.40 2.68 6.61 -40.82 -0.27 2.41 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.07 7.46 -51.93 -0.39 0.68 16 41 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 46 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 49 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 50 H 0.14 0.55 6.53 -52.49 -0.34 0.21 16 51 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -34.43 413.57 -9.78 -44.21 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -8.41 Total: -1.74 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.03 Total: 0.76 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.46 Total: -55.40 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.10 Total: -11.48 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.43 -9.78 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481455090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.907 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds