Wall clock time and date at job start Wed Apr 1 2020 04:47:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52989 * 109.47221 * 2 1
4 4 O 1.42907 * 109.47009 * 120.00134 * 2 1 3
5 5 C 1.35688 * 117.00091 * 89.99523 * 4 2 1
6 6 C 1.38892 * 119.62215 * 179.72552 * 5 4 2
7 7 C 1.39563 * 118.94870 * 180.28050 * 6 5 4
8 8 C 1.48160 * 120.89679 * 179.97438 * 7 6 5
9 9 O 1.21515 * 119.99789 * 0.02562 * 8 7 6
10 10 N 1.34771 * 120.00312 * 180.02562 * 8 7 6
11 11 C 1.46508 * 120.00054 * 180.02562 * 10 8 7
12 12 C 1.53000 * 109.46876 * 180.02562 * 11 10 8
13 13 C 1.53006 * 109.46817 * 179.97438 * 12 11 10
14 14 H 1.08996 * 110.88349 * 302.56898 * 13 12 11
15 15 C 1.55153 * 111.00231 * 178.64586 * 13 12 11
16 16 C 1.54322 * 102.94004 * 206.42098 * 15 13 12
17 17 N 1.47017 * 107.27483 * 22.19614 * 16 15 13
18 18 C 1.36930 * 125.65286 * 181.01782 * 17 16 15
19 19 H 1.07999 * 120.00423 * 180.02562 * 18 17 16
20 20 C 1.38813 * 120.00018 * 0.04837 * 18 17 16
21 21 N 1.31622 * 119.99808 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00034 * 179.97438 * 20 18 17
23 23 H 1.48499 * 109.47136 * 89.99748 * 22 20 18
24 24 H 1.48502 * 109.46772 * 209.99474 * 22 20 18
25 25 H 1.48498 * 109.47262 * 329.99694 * 22 20 18
26 26 C 1.47430 * 108.69996 * 1.05896 * 17 16 15
27 27 C 1.39978 * 118.21433 * 359.97438 * 7 6 5
28 28 C 1.37970 * 119.13278 * 0.02562 * 27 7 6
29 29 N 1.31905 * 120.98004 * 0.02562 * 28 27 7
30 30 H 1.09006 * 109.47085 * 300.00253 * 1 2 3
31 31 H 1.08997 * 109.46927 * 59.99704 * 1 2 3
32 32 H 1.08996 * 109.47604 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46648 * 239.99588 * 2 1 3
34 34 H 1.09005 * 109.47262 * 180.02562 * 3 2 1
35 35 H 1.08997 * 109.47412 * 299.99999 * 3 2 1
36 36 H 1.09001 * 109.47646 * 60.00199 * 3 2 1
37 37 H 1.08008 * 120.52841 * 0.27492 * 6 5 4
38 38 H 0.97004 * 120.00041 * 359.97438 * 10 8 7
39 39 H 1.09002 * 109.46723 * 299.99858 * 11 10 8
40 40 H 1.09000 * 109.46732 * 59.99817 * 11 10 8
41 41 H 1.09002 * 109.47227 * 299.99425 * 12 11 10
42 42 H 1.08992 * 109.47403 * 59.99686 * 12 11 10
43 43 H 1.08997 * 110.72159 * 324.78747 * 15 13 12
44 44 H 1.08999 * 110.72046 * 88.06444 * 15 13 12
45 45 H 1.09000 * 109.88385 * 262.77432 * 16 15 13
46 46 H 1.09005 * 110.01141 * 141.68825 * 16 15 13
47 47 H 0.97001 * 120.00162 * 179.97438 * 21 20 18
48 48 H 1.09004 * 110.36532 * 217.03456 * 26 17 16
49 49 H 1.09003 * 110.46185 * 94.75460 * 26 17 16
50 50 H 1.08001 * 120.42804 * 179.97438 * 27 7 6
51 51 H 1.07998 * 119.50916 * 180.02562 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 2.2116 -2.0111 1.0653
6 6 2.6795 -2.7193 2.1647
7 6 2.8912 -4.0933 2.0430
8 6 3.3900 -4.8907 3.1878
9 8 3.6199 -4.3491 4.2510
10 7 3.5886 -6.2165 3.0501
11 6 4.0812 -7.0050 4.1823
12 6 4.2187 -8.4698 3.7623
13 6 4.7338 -9.2931 4.9447
14 1 5.6855 -8.9024 5.3049
15 6 4.8545 -10.7931 4.5671
16 6 4.6975 -11.5055 5.9271
17 7 3.9941 -10.5792 6.8264
18 6 3.6766 -10.8247 8.1356
19 1 3.1559 -10.0763 8.7145
20 6 4.0243 -12.0354 8.7189
21 7 4.6588 -12.9476 8.0134
22 14 3.5917 -12.3699 10.5051
23 1 2.2505 -13.0031 10.5793
24 1 4.6032 -13.2822 11.0967
25 1 3.5776 -11.0906 11.2590
26 6 3.6865 -9.3427 6.0850
27 6 2.6198 -4.6981 0.8101
28 6 2.1571 -3.9209 -0.2319
29 7 1.9696 -2.6241 -0.0804
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3634 -1.0276 0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 3.1300 1.4424 -0.0005
35 1 1.6767 1.9563 -0.8899
36 1 1.6767 1.9563 0.8900
37 1 2.8764 -2.2146 3.0991
38 1 3.4047 -6.6489 2.2014
39 1 5.0536 -6.6241 4.4946
40 1 3.3778 -6.9288 5.0115
41 1 3.2465 -8.8510 3.4498
42 1 4.9223 -8.5456 2.9333
43 1 4.0562 -11.0845 3.8847
44 1 5.8314 -11.0039 4.1320
45 1 5.6792 -11.7451 6.3356
46 1 4.1142 -12.4182 5.8049
47 1 4.9021 -13.7935 8.4211
48 1 3.7922 -8.4742 6.7352
49 1 2.6784 -9.3865 5.6725
50 1 2.7714 -5.7590 0.6760
51 1 1.9454 -4.3813 -1.1856
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001481455090.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:44
Heat of formation + Delta-G solvation = -46.025062 kcal
Electronic energy + Delta-G solvation = -29189.266666 eV
Core-core repulsion = 25088.424090 eV
Total energy + Delta-G solvation = -4100.842576 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.96639 -40.73676 -39.44015 -39.01763 -36.57379 -34.85685 -34.26503 -33.82511
-32.41304 -31.20386 -30.64562 -28.32097 -28.16228 -26.82075 -25.68915 -24.43380
-23.69016 -22.76935 -21.80892 -21.58907 -20.85878 -19.74386 -18.86692 -18.30478
-17.56263 -17.08098 -16.86491 -16.77044 -16.66711 -16.49743 -16.22125 -15.62791
-15.40984 -15.32536 -15.08987 -14.83322 -14.77104 -14.15419 -14.07110 -13.83538
-13.67500 -13.33940 -13.28990 -13.20082 -13.10666 -12.97646 -12.86832 -12.78324
-12.67407 -12.22397 -12.01589 -11.94744 -11.80996 -11.79040 -11.64276 -11.38320
-11.31070 -11.26917 -11.08209 -10.70166 -10.66634 -10.18043 -9.58850 -8.87720
-7.85321 -5.20102 -0.42613 0.08311 1.44038 1.45880 1.54722 1.73125
1.75319 2.16984 2.49133 2.74989 3.23228 3.32419 3.46475 3.67687
3.80239 3.86396 3.88830 3.98580 4.00269 4.02781 4.05070 4.17121
4.27413 4.35038 4.38520 4.60001 4.64042 4.67676 4.68940 4.73499
4.78664 4.82989 4.84463 4.88364 4.91873 4.97313 5.01760 5.14000
5.17884 5.19654 5.25296 5.28120 5.31838 5.38813 5.45377 5.55259
5.73007 5.81289 6.21844 6.22066 6.41312 6.72647 7.06187 7.11885
7.80184 8.43946 9.24837
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.025322 B = 0.001530 C = 0.001478
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.483466 B =18292.498331 C =18943.191987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.075 3.925
3 C -0.149 4.149
4 O -0.317 6.317
5 C 0.312 3.688
6 C -0.158 4.158
7 C -0.060 4.060
8 C 0.553 3.447
9 O -0.575 6.575
10 N -0.698 5.698
11 C 0.120 3.880
12 C -0.099 4.099
13 C -0.086 4.086
14 H 0.072 0.928
15 C -0.121 4.121
16 C 0.179 3.821
17 N -0.631 5.631
18 C -0.245 4.245
19 H 0.078 0.922
20 C -0.067 4.067
21 N -0.950 5.950
22 Si 0.977 3.023
23 H -0.285 1.285
24 H -0.292 1.292
25 H -0.271 1.271
26 C 0.132 3.868
27 C -0.167 4.167
28 C 0.143 3.857
29 N -0.533 5.533
30 H 0.058 0.942
31 H 0.092 0.908
32 H 0.048 0.952
33 H 0.088 0.912
34 H 0.059 0.941
35 H 0.100 0.900
36 H 0.063 0.937
37 H 0.134 0.866
38 H 0.420 0.580
39 H 0.062 0.938
40 H 0.053 0.947
41 H 0.085 0.915
42 H 0.102 0.898
43 H 0.078 0.922
44 H 0.083 0.917
45 H 0.006 0.994
46 H 0.004 0.996
47 H 0.246 0.754
48 H 0.031 0.969
49 H 0.026 0.974
50 H 0.181 0.819
51 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.366 22.883 -26.524 35.439
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.019 3.981
3 C -0.206 4.206
4 O -0.225 6.225
5 C 0.134 3.866
6 C -0.180 4.180
7 C -0.070 4.070
8 C 0.340 3.660
9 O -0.454 6.454
10 N -0.351 5.351
11 C -0.003 4.003
12 C -0.137 4.137
13 C -0.106 4.106
14 H 0.090 0.910
15 C -0.159 4.159
16 C 0.054 3.946
17 N -0.358 5.358
18 C -0.374 4.374
19 H 0.096 0.904
20 C -0.260 4.260
21 N -0.600 5.600
22 Si 0.805 3.195
23 H -0.212 1.212
24 H -0.219 1.219
25 H -0.196 1.196
26 C 0.007 3.993
27 C -0.187 4.187
28 C -0.012 4.012
29 N -0.258 5.258
30 H 0.077 0.923
31 H 0.111 0.889
32 H 0.067 0.933
33 H 0.106 0.894
34 H 0.078 0.922
35 H 0.118 0.882
36 H 0.082 0.918
37 H 0.152 0.848
38 H 0.259 0.741
39 H 0.081 0.919
40 H 0.072 0.928
41 H 0.103 0.897
42 H 0.120 0.880
43 H 0.097 0.903
44 H 0.101 0.899
45 H 0.024 0.976
46 H 0.022 0.978
47 H 0.056 0.944
48 H 0.049 0.951
49 H 0.043 0.957
50 H 0.198 0.802
51 H 0.225 0.775
Dipole moment (debyes) X Y Z Total
from point charges -5.442 23.786 -26.074 35.711
hybrid contribution 0.045 -1.168 1.937 2.262
sum -5.397 22.618 -24.137 33.516
Atomic orbital electron populations
1.22196 0.94126 1.02298 1.03553 1.22608 0.95048 0.93502 0.86918
1.21936 1.01820 0.92747 1.04053 1.86313 1.80218 1.15761 1.40243
1.19651 0.92215 0.85188 0.89589 1.21095 1.03789 0.93703 0.99402
1.20054 0.99203 0.92976 0.94796 1.18429 0.77617 0.82771 0.87194
1.90800 1.52785 1.71991 1.29859 1.45718 1.65959 1.06775 1.16614
1.21397 0.99319 0.91179 0.88408 1.21603 1.03456 0.91007 0.97603
1.22159 0.98356 0.95213 0.94857 0.90969 1.22754 1.02391 0.94444
0.96308 1.20964 0.94256 0.91265 0.88094 1.44836 1.67356 1.15019
1.08544 1.19466 1.30844 0.99928 0.87171 0.90441 1.25637 1.01272
0.96587 1.02475 1.70196 1.46057 1.07251 1.36456 0.85102 0.77066
0.77667 0.79661 1.21186 1.21855 1.19636 1.21846 0.96384 0.88111
0.92939 1.22548 1.01157 1.03542 0.91439 1.23139 0.91205 0.86607
1.00285 1.67235 1.20605 1.14207 1.23742 0.92275 0.88925 0.93289
0.89354 0.92172 0.88175 0.91795 0.84766 0.74089 0.91916 0.92821
0.89675 0.88002 0.90325 0.89883 0.97577 0.97803 0.94444 0.95111
0.95666 0.80174 0.77548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.96 9.53 71.98 0.69 -1.28 16
2 C 0.07 1.05 3.11 30.59 0.10 1.15 16
3 C -0.15 -1.48 9.56 71.98 0.69 -0.79 16
4 O -0.32 -6.45 9.76 -90.06 -0.88 -7.33 16
5 C 0.31 6.33 7.45 84.80 0.63 6.96 16
6 C -0.16 -3.49 9.61 22.75 0.22 -3.27 16
7 C -0.06 -1.11 5.91 -19.90 -0.12 -1.23 16
8 C 0.55 12.95 7.80 86.88 0.68 13.63 16
9 O -0.57 -19.18 16.44 -3.76 -0.06 -19.24 16
10 N -0.70 -11.98 5.51 -465.66 -2.57 -14.55 16
11 C 0.12 2.64 5.52 86.38 0.48 3.12 16
12 C -0.10 -1.89 4.84 30.60 0.15 -1.74 16
13 C -0.09 -2.59 3.07 -9.40 -0.03 -2.62 16
14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
15 C -0.12 -4.02 6.42 31.78 0.20 -3.81 16
16 C 0.18 8.86 5.38 86.73 0.47 9.33 16
17 N -0.63 -33.14 3.39 -691.98 -2.35 -35.49 16
18 C -0.24 -14.23 10.28 84.03 0.86 -13.36 16
19 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16
20 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16
21 N -0.95 -58.35 10.31 21.65 0.22 -58.13 16
22 Si 0.98 47.02 29.55 68.60 2.03 49.05 16
23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16
24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16
25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
26 C 0.13 5.31 5.89 86.85 0.51 5.83 16
27 C -0.17 -1.68 9.61 22.63 0.22 -1.46 16
28 C 0.14 1.40 11.17 84.62 0.94 2.35 16
29 N -0.53 -8.62 8.61 -309.15 -2.66 -11.29 16
30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16
31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.09 1.24 6.98 -2.39 -0.02 1.23 16
34 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16
35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16
36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
37 H 0.13 3.37 7.74 -2.91 -0.02 3.35 16
38 H 0.42 3.64 6.61 -92.71 -0.61 3.03 16
39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
40 H 0.05 1.45 7.46 -2.39 -0.02 1.43 16
41 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16
42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
43 H 0.08 2.29 8.04 -2.39 -0.02 2.28 16
44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16
45 H 0.01 0.33 7.38 -2.39 -0.02 0.32 16
46 H 0.00 0.21 7.50 -2.38 -0.02 0.19 16
47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16
48 H 0.03 1.26 8.07 -2.38 -0.02 1.24 16
49 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16
50 H 0.18 0.34 6.53 -2.91 -0.02 0.32 16
51 H 0.21 0.28 8.06 -2.91 -0.02 0.25 16
Total: -1.00 -81.04 413.57 1.19 -79.86
By element:
Atomic # 1 Polarization: 7.48 SS G_CDS: 0.31 Total: 7.78 kcal
Atomic # 6 Polarization: 2.19 SS G_CDS: 7.15 Total: 9.34 kcal
Atomic # 7 Polarization: -112.10 SS G_CDS: -7.36 Total: -119.46 kcal
Atomic # 8 Polarization: -25.63 SS G_CDS: -0.94 Total: -26.58 kcal
Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal
Total: -81.04 1.19 -79.86 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001481455090.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.831 kcal
(2) G-P(sol) polarization free energy of solvation -81.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds