Wall clock time and date at job start Wed Apr 1 2020 04:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47221 * 2 1 4 4 O 1.42907 * 109.47009 * 120.00134 * 2 1 3 5 5 C 1.35688 * 117.00091 * 89.99523 * 4 2 1 6 6 C 1.38892 * 119.62215 * 179.72552 * 5 4 2 7 7 C 1.39563 * 118.94870 * 180.28050 * 6 5 4 8 8 C 1.48160 * 120.89679 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99789 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00312 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00054 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46876 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.46817 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.88349 * 302.56898 * 13 12 11 15 15 C 1.55153 * 111.00231 * 178.64586 * 13 12 11 16 16 C 1.54322 * 102.94004 * 206.42098 * 15 13 12 17 17 N 1.47017 * 107.27483 * 22.19614 * 16 15 13 18 18 C 1.36930 * 125.65286 * 181.01782 * 17 16 15 19 19 H 1.07999 * 120.00423 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00018 * 0.04837 * 18 17 16 21 21 N 1.31622 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 89.99748 * 22 20 18 24 24 H 1.48502 * 109.46772 * 209.99474 * 22 20 18 25 25 H 1.48498 * 109.47262 * 329.99694 * 22 20 18 26 26 C 1.47430 * 108.69996 * 1.05896 * 17 16 15 27 27 C 1.39978 * 118.21433 * 359.97438 * 7 6 5 28 28 C 1.37970 * 119.13278 * 0.02562 * 27 7 6 29 29 N 1.31905 * 120.98004 * 0.02562 * 28 27 7 30 30 H 1.09006 * 109.47085 * 300.00253 * 1 2 3 31 31 H 1.08997 * 109.46927 * 59.99704 * 1 2 3 32 32 H 1.08996 * 109.47604 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46648 * 239.99588 * 2 1 3 34 34 H 1.09005 * 109.47262 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47412 * 299.99999 * 3 2 1 36 36 H 1.09001 * 109.47646 * 60.00199 * 3 2 1 37 37 H 1.08008 * 120.52841 * 0.27492 * 6 5 4 38 38 H 0.97004 * 120.00041 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.46723 * 299.99858 * 11 10 8 40 40 H 1.09000 * 109.46732 * 59.99817 * 11 10 8 41 41 H 1.09002 * 109.47227 * 299.99425 * 12 11 10 42 42 H 1.08992 * 109.47403 * 59.99686 * 12 11 10 43 43 H 1.08997 * 110.72159 * 324.78747 * 15 13 12 44 44 H 1.08999 * 110.72046 * 88.06444 * 15 13 12 45 45 H 1.09000 * 109.88385 * 262.77432 * 16 15 13 46 46 H 1.09005 * 110.01141 * 141.68825 * 16 15 13 47 47 H 0.97001 * 120.00162 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.36532 * 217.03456 * 26 17 16 49 49 H 1.09003 * 110.46185 * 94.75460 * 26 17 16 50 50 H 1.08001 * 120.42804 * 179.97438 * 27 7 6 51 51 H 1.07998 * 119.50916 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 -2.0111 1.0653 6 6 2.6795 -2.7193 2.1647 7 6 2.8912 -4.0933 2.0430 8 6 3.3900 -4.8907 3.1878 9 8 3.6199 -4.3491 4.2510 10 7 3.5886 -6.2165 3.0501 11 6 4.0812 -7.0050 4.1823 12 6 4.2187 -8.4698 3.7623 13 6 4.7338 -9.2931 4.9447 14 1 5.6855 -8.9024 5.3049 15 6 4.8545 -10.7931 4.5671 16 6 4.6975 -11.5055 5.9271 17 7 3.9941 -10.5792 6.8264 18 6 3.6766 -10.8247 8.1356 19 1 3.1559 -10.0763 8.7145 20 6 4.0243 -12.0354 8.7189 21 7 4.6588 -12.9476 8.0134 22 14 3.5917 -12.3699 10.5051 23 1 2.2505 -13.0031 10.5793 24 1 4.6032 -13.2822 11.0967 25 1 3.5776 -11.0906 11.2590 26 6 3.6865 -9.3427 6.0850 27 6 2.6198 -4.6981 0.8101 28 6 2.1571 -3.9209 -0.2319 29 7 1.9696 -2.6241 -0.0804 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.8764 -2.2146 3.0991 38 1 3.4047 -6.6489 2.2014 39 1 5.0536 -6.6241 4.4946 40 1 3.3778 -6.9288 5.0115 41 1 3.2465 -8.8510 3.4498 42 1 4.9223 -8.5456 2.9333 43 1 4.0562 -11.0845 3.8847 44 1 5.8314 -11.0039 4.1320 45 1 5.6792 -11.7451 6.3356 46 1 4.1142 -12.4182 5.8049 47 1 4.9021 -13.7935 8.4211 48 1 3.7922 -8.4742 6.7352 49 1 2.6784 -9.3865 5.6725 50 1 2.7714 -5.7590 0.6760 51 1 1.9454 -4.3813 -1.1856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481455090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:44 Heat of formation + Delta-G solvation = -46.025062 kcal Electronic energy + Delta-G solvation = -29189.266666 eV Core-core repulsion = 25088.424090 eV Total energy + Delta-G solvation = -4100.842576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.96639 -40.73676 -39.44015 -39.01763 -36.57379 -34.85685 -34.26503 -33.82511 -32.41304 -31.20386 -30.64562 -28.32097 -28.16228 -26.82075 -25.68915 -24.43380 -23.69016 -22.76935 -21.80892 -21.58907 -20.85878 -19.74386 -18.86692 -18.30478 -17.56263 -17.08098 -16.86491 -16.77044 -16.66711 -16.49743 -16.22125 -15.62791 -15.40984 -15.32536 -15.08987 -14.83322 -14.77104 -14.15419 -14.07110 -13.83538 -13.67500 -13.33940 -13.28990 -13.20082 -13.10666 -12.97646 -12.86832 -12.78324 -12.67407 -12.22397 -12.01589 -11.94744 -11.80996 -11.79040 -11.64276 -11.38320 -11.31070 -11.26917 -11.08209 -10.70166 -10.66634 -10.18043 -9.58850 -8.87720 -7.85321 -5.20102 -0.42613 0.08311 1.44038 1.45880 1.54722 1.73125 1.75319 2.16984 2.49133 2.74989 3.23228 3.32419 3.46475 3.67687 3.80239 3.86396 3.88830 3.98580 4.00269 4.02781 4.05070 4.17121 4.27413 4.35038 4.38520 4.60001 4.64042 4.67676 4.68940 4.73499 4.78664 4.82989 4.84463 4.88364 4.91873 4.97313 5.01760 5.14000 5.17884 5.19654 5.25296 5.28120 5.31838 5.38813 5.45377 5.55259 5.73007 5.81289 6.21844 6.22066 6.41312 6.72647 7.06187 7.11885 7.80184 8.43946 9.24837 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.001530 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.483466 B =18292.498331 C =18943.191987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 C -0.149 4.149 4 O -0.317 6.317 5 C 0.312 3.688 6 C -0.158 4.158 7 C -0.060 4.060 8 C 0.553 3.447 9 O -0.575 6.575 10 N -0.698 5.698 11 C 0.120 3.880 12 C -0.099 4.099 13 C -0.086 4.086 14 H 0.072 0.928 15 C -0.121 4.121 16 C 0.179 3.821 17 N -0.631 5.631 18 C -0.245 4.245 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.271 1.271 26 C 0.132 3.868 27 C -0.167 4.167 28 C 0.143 3.857 29 N -0.533 5.533 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.134 0.866 38 H 0.420 0.580 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.006 0.994 46 H 0.004 0.996 47 H 0.246 0.754 48 H 0.031 0.969 49 H 0.026 0.974 50 H 0.181 0.819 51 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 22.883 -26.524 35.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.225 6.225 5 C 0.134 3.866 6 C -0.180 4.180 7 C -0.070 4.070 8 C 0.340 3.660 9 O -0.454 6.454 10 N -0.351 5.351 11 C -0.003 4.003 12 C -0.137 4.137 13 C -0.106 4.106 14 H 0.090 0.910 15 C -0.159 4.159 16 C 0.054 3.946 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.196 1.196 26 C 0.007 3.993 27 C -0.187 4.187 28 C -0.012 4.012 29 N -0.258 5.258 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.024 0.976 46 H 0.022 0.978 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.043 0.957 50 H 0.198 0.802 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.442 23.786 -26.074 35.711 hybrid contribution 0.045 -1.168 1.937 2.262 sum -5.397 22.618 -24.137 33.516 Atomic orbital electron populations 1.22196 0.94126 1.02298 1.03553 1.22608 0.95048 0.93502 0.86918 1.21936 1.01820 0.92747 1.04053 1.86313 1.80218 1.15761 1.40243 1.19651 0.92215 0.85188 0.89589 1.21095 1.03789 0.93703 0.99402 1.20054 0.99203 0.92976 0.94796 1.18429 0.77617 0.82771 0.87194 1.90800 1.52785 1.71991 1.29859 1.45718 1.65959 1.06775 1.16614 1.21397 0.99319 0.91179 0.88408 1.21603 1.03456 0.91007 0.97603 1.22159 0.98356 0.95213 0.94857 0.90969 1.22754 1.02391 0.94444 0.96308 1.20964 0.94256 0.91265 0.88094 1.44836 1.67356 1.15019 1.08544 1.19466 1.30844 0.99928 0.87171 0.90441 1.25637 1.01272 0.96587 1.02475 1.70196 1.46057 1.07251 1.36456 0.85102 0.77066 0.77667 0.79661 1.21186 1.21855 1.19636 1.21846 0.96384 0.88111 0.92939 1.22548 1.01157 1.03542 0.91439 1.23139 0.91205 0.86607 1.00285 1.67235 1.20605 1.14207 1.23742 0.92275 0.88925 0.93289 0.89354 0.92172 0.88175 0.91795 0.84766 0.74089 0.91916 0.92821 0.89675 0.88002 0.90325 0.89883 0.97577 0.97803 0.94444 0.95111 0.95666 0.80174 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.53 71.98 0.69 -1.28 16 2 C 0.07 1.05 3.11 30.59 0.10 1.15 16 3 C -0.15 -1.48 9.56 71.98 0.69 -0.79 16 4 O -0.32 -6.45 9.76 -90.06 -0.88 -7.33 16 5 C 0.31 6.33 7.45 84.80 0.63 6.96 16 6 C -0.16 -3.49 9.61 22.75 0.22 -3.27 16 7 C -0.06 -1.11 5.91 -19.90 -0.12 -1.23 16 8 C 0.55 12.95 7.80 86.88 0.68 13.63 16 9 O -0.57 -19.18 16.44 -3.76 -0.06 -19.24 16 10 N -0.70 -11.98 5.51 -465.66 -2.57 -14.55 16 11 C 0.12 2.64 5.52 86.38 0.48 3.12 16 12 C -0.10 -1.89 4.84 30.60 0.15 -1.74 16 13 C -0.09 -2.59 3.07 -9.40 -0.03 -2.62 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.12 -4.02 6.42 31.78 0.20 -3.81 16 16 C 0.18 8.86 5.38 86.73 0.47 9.33 16 17 N -0.63 -33.14 3.39 -691.98 -2.35 -35.49 16 18 C -0.24 -14.23 10.28 84.03 0.86 -13.36 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 21 N -0.95 -58.35 10.31 21.65 0.22 -58.13 16 22 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 C 0.13 5.31 5.89 86.85 0.51 5.83 16 27 C -0.17 -1.68 9.61 22.63 0.22 -1.46 16 28 C 0.14 1.40 11.17 84.62 0.94 2.35 16 29 N -0.53 -8.62 8.61 -309.15 -2.66 -11.29 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.24 6.98 -2.39 -0.02 1.23 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.13 3.37 7.74 -2.91 -0.02 3.35 16 38 H 0.42 3.64 6.61 -92.71 -0.61 3.03 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.45 7.46 -2.39 -0.02 1.43 16 41 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 2.29 8.04 -2.39 -0.02 2.28 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.01 0.33 7.38 -2.39 -0.02 0.32 16 46 H 0.00 0.21 7.50 -2.38 -0.02 0.19 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 48 H 0.03 1.26 8.07 -2.38 -0.02 1.24 16 49 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 50 H 0.18 0.34 6.53 -2.91 -0.02 0.32 16 51 H 0.21 0.28 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -81.04 413.57 1.19 -79.86 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.31 Total: 7.78 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 7.15 Total: 9.34 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -7.36 Total: -119.46 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.94 Total: -26.58 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -81.04 1.19 -79.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481455090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.831 kcal (2) G-P(sol) polarization free energy of solvation -81.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds