Wall clock time and date at job start Wed Apr 1 2020 04:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46988 * 2 1 4 4 O 1.42905 * 109.47066 * 119.99709 * 2 1 3 5 5 C 1.35496 * 117.00021 * 90.00451 * 4 2 1 6 6 C 1.39161 * 119.52589 * 180.02562 * 5 4 2 7 7 C 1.37954 * 119.26446 * 180.02562 * 6 5 4 8 8 C 1.40286 * 118.35604 * 359.97438 * 7 6 5 9 9 C 1.47614 * 120.49529 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00376 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99908 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00168 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.05610 * 326.41614 * 12 11 9 14 14 C 1.53870 * 110.03350 * 87.83422 * 12 11 9 15 15 C 1.54269 * 106.59902 * 119.28699 * 14 12 11 16 16 C 1.55031 * 104.28113 * 23.51530 * 15 14 12 17 17 C 1.54267 * 110.03163 * 205.00219 * 12 11 9 18 18 H 1.08999 * 110.48845 * 335.91349 * 17 12 11 19 19 C 1.53004 * 110.48676 * 98.42797 * 17 12 11 20 20 N 1.46504 * 109.46932 * 183.16084 * 19 17 12 21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99987 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00079 * 25 23 21 29 29 C 1.39523 * 119.00291 * 0.25389 * 8 7 6 30 30 N 1.31665 * 120.62752 * 359.47423 * 29 8 7 31 31 H 1.09002 * 109.46595 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47151 * 300.00402 * 1 2 3 33 33 H 1.09001 * 109.46878 * 60.00685 * 1 2 3 34 34 H 1.09000 * 109.47151 * 239.99598 * 2 1 3 35 35 H 1.09007 * 109.46791 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46752 * 299.99392 * 3 2 1 37 37 H 1.08996 * 109.47033 * 59.99983 * 3 2 1 38 38 H 1.08005 * 120.36898 * 0.03997 * 6 5 4 39 39 H 1.08004 * 120.82326 * 179.97438 * 7 6 5 40 40 H 0.96999 * 119.99977 * 359.97438 * 11 9 8 41 41 H 1.09003 * 110.03137 * 238.57026 * 14 12 11 42 42 H 1.09001 * 110.03262 * 359.95249 * 14 12 11 43 43 H 1.09003 * 110.48493 * 142.29131 * 15 14 12 44 44 H 1.08998 * 110.48349 * 264.93048 * 15 14 12 45 45 H 1.08997 * 110.87628 * 203.90258 * 16 15 14 46 46 H 1.09007 * 110.69387 * 80.48813 * 16 15 14 47 47 H 1.08998 * 109.47524 * 63.15728 * 19 17 12 48 48 H 1.08997 * 109.47093 * 303.15629 * 19 17 12 49 49 H 0.97000 * 119.99825 * 359.97438 * 20 19 17 50 50 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 51 51 H 1.07999 * 119.68349 * 179.72175 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2115 -2.0091 1.0655 6 6 2.6744 -2.7176 2.1702 7 6 2.8819 -4.0771 2.0609 8 6 2.6149 -4.6950 0.8300 9 6 2.8209 -6.1468 0.6604 10 8 3.2244 -6.8165 1.5915 11 7 2.5617 -6.7300 -0.5267 12 6 2.7656 -8.1709 -0.6950 13 1 3.6097 -8.5022 -0.0901 14 6 1.4933 -8.9344 -0.2876 15 6 1.0185 -9.6997 -1.5402 16 6 2.2972 -9.8506 -2.4037 17 6 3.0195 -8.4987 -2.1809 18 1 2.5908 -7.7272 -2.8205 19 6 4.5190 -8.6424 -2.4489 20 7 4.7392 -8.8783 -3.8780 21 6 6.0119 -9.0386 -4.3572 22 1 6.8534 -8.9907 -3.6819 23 6 6.2206 -9.2626 -5.7112 24 7 5.1951 -9.3215 -6.5342 25 14 7.9568 -9.4806 -6.3652 26 1 7.9085 -9.7056 -7.8322 27 1 8.7512 -8.2595 -6.0770 28 1 8.5907 -10.6506 -5.7061 29 6 2.1574 -3.9157 -0.2330 30 7 1.9681 -2.6213 -0.0831 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6767 1.9563 0.8900 38 1 2.8688 -2.2089 3.1029 39 1 3.2410 -4.6515 2.9020 40 1 2.2394 -6.1958 -1.2695 41 1 1.7200 -9.6362 0.5151 42 1 0.7244 -8.2329 0.0361 43 1 0.6264 -10.6783 -1.2634 44 1 0.2646 -9.1232 -2.0763 45 1 2.0423 -9.9838 -3.4551 46 1 2.9084 -10.6790 -2.0453 47 1 4.9115 -9.4833 -1.8771 48 1 5.0310 -7.7282 -2.1485 49 1 3.9835 -8.9209 -4.4846 50 1 4.2936 -9.2079 -6.1947 51 1 1.9527 -4.3792 -1.1867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482679049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:11 Heat of formation + Delta-G solvation = -41.635317 kcal Electronic energy + Delta-G solvation = -30071.862845 eV Core-core repulsion = 25971.210622 eV Total energy + Delta-G solvation = -4100.652223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23700 -40.03290 -38.64206 -37.74742 -34.78854 -33.94775 -33.54390 -32.87305 -31.45643 -30.80494 -28.42057 -27.72650 -27.56080 -24.72818 -24.39973 -23.97325 -22.40673 -21.64439 -21.21020 -20.15527 -19.91287 -18.95803 -17.87664 -17.40965 -17.08941 -16.30353 -16.11113 -15.44158 -15.31301 -14.99145 -14.84052 -14.71554 -14.25523 -14.14909 -13.82127 -13.69869 -13.47115 -13.43099 -13.27617 -13.20306 -13.01225 -12.76461 -12.72939 -12.34928 -12.23231 -11.82132 -11.37708 -11.30305 -11.17806 -10.98223 -10.75505 -10.69996 -10.51320 -10.46659 -10.34450 -10.32023 -10.30275 -9.97551 -9.79065 -9.23862 -9.08670 -8.87150 -8.84606 -6.99380 -6.09854 -3.09049 0.40896 0.82819 2.56100 2.68205 3.03387 3.52546 3.53925 3.56010 3.73329 3.76678 4.39619 4.41999 4.49874 4.54379 4.54614 4.64598 4.70179 4.75758 4.78000 4.84732 4.96488 5.13195 5.19810 5.26887 5.32046 5.37460 5.38324 5.50199 5.50503 5.56984 5.63551 5.68674 5.69299 5.71984 5.76042 5.76287 5.83252 5.97374 5.98719 6.02022 6.11985 6.19411 6.40396 6.46921 6.49570 6.69375 6.81341 6.82410 7.35062 7.40290 7.82111 8.09792 8.76750 9.23917 10.10228 10.25381 11.38867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.002302 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.636260 B =12158.602075 C =13776.021906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.345 3.655 6 C -0.199 4.199 7 C 0.018 3.982 8 C -0.226 4.226 9 C 0.568 3.432 10 O -0.538 6.538 11 N -0.714 5.714 12 C 0.148 3.852 13 H 0.096 0.904 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.104 4.104 18 H 0.078 0.922 19 C 0.167 3.833 20 N -0.742 5.742 21 C -0.329 4.329 22 H 0.063 0.937 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.295 1.295 29 C 0.181 3.819 30 N -0.542 5.542 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.398 0.602 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.022 0.978 48 H 0.018 0.982 49 H 0.367 0.633 50 H 0.254 0.746 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 16.371 16.787 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 C -0.208 4.208 4 O -0.205 6.205 5 C 0.166 3.834 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.232 4.232 9 C 0.355 3.645 10 O -0.416 6.416 11 N -0.365 5.365 12 C 0.043 3.957 13 H 0.114 0.886 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.123 4.123 18 H 0.096 0.904 19 C 0.039 3.961 20 N -0.387 5.387 21 C -0.461 4.461 22 H 0.081 0.919 23 C -0.243 4.243 24 N -0.591 5.591 25 Si 0.910 3.090 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 C 0.023 3.977 30 N -0.266 5.266 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.233 0.767 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.040 0.960 48 H 0.036 0.964 49 H 0.200 0.800 50 H 0.065 0.935 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.575 16.328 15.757 25.473 hybrid contribution -1.035 0.115 1.337 1.695 sum -12.611 16.444 17.094 26.863 Atomic orbital electron populations 1.22220 0.94649 1.02986 1.02737 1.22444 0.94554 0.92926 0.87827 1.21918 1.02135 0.93678 1.03099 1.86278 1.79354 1.15799 1.39052 1.20062 0.88986 0.84740 0.89586 1.21055 1.07538 0.94022 0.99383 1.21533 0.89649 0.92905 0.96689 1.20837 1.10460 0.95186 0.96670 1.17876 0.77359 0.86330 0.82983 1.90782 1.46037 1.64708 1.40101 1.46091 1.67511 1.09908 1.13020 1.21725 0.98331 0.78500 0.97148 0.88627 1.22543 0.96989 0.99185 0.98248 1.22409 0.97961 0.99929 0.95944 1.22477 0.95360 0.96823 1.00196 1.22459 0.98052 0.98191 0.93624 0.90405 1.20615 0.90762 0.97636 0.87081 1.42324 1.05750 1.88256 1.02392 1.20032 0.84878 1.46500 0.94640 0.91863 1.25761 1.06051 1.00439 0.92080 1.70895 0.98653 1.53362 1.36163 0.83248 0.73684 0.75888 0.76156 1.21031 1.22306 1.22265 1.22644 0.89701 0.87606 0.97729 1.67271 1.22603 1.12283 1.24404 0.91938 0.91973 0.90868 0.88913 0.91697 0.90292 0.91604 0.83397 0.82776 0.76663 0.91185 0.91641 0.91697 0.91837 0.90941 0.90947 0.96010 0.96380 0.80022 0.93489 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.53 37.16 0.35 -0.81 16 2 C 0.08 0.63 3.10 -26.73 -0.08 0.54 16 3 C -0.15 -0.90 9.56 37.16 0.36 -0.55 16 4 O -0.30 -2.91 9.75 -18.18 -0.18 -3.09 16 5 C 0.34 3.59 7.46 -16.96 -0.13 3.46 16 6 C -0.20 -1.83 10.02 -39.34 -0.39 -2.23 16 7 C 0.02 0.18 9.70 -38.92 -0.38 -0.20 16 8 C -0.23 -2.49 5.89 -104.82 -0.62 -3.11 16 9 C 0.57 7.45 7.77 -12.43 -0.10 7.36 16 10 O -0.54 -8.78 16.07 5.29 0.08 -8.70 16 11 N -0.71 -8.52 4.93 -53.74 -0.27 -8.78 16 12 C 0.15 1.99 2.82 -66.82 -0.19 1.80 16 13 H 0.10 1.48 7.26 -51.93 -0.38 1.11 16 14 C -0.13 -1.55 6.59 -25.61 -0.17 -1.72 16 15 C -0.12 -1.43 6.83 -24.99 -0.17 -1.61 16 16 C -0.11 -1.59 6.11 -24.66 -0.15 -1.75 16 17 C -0.10 -1.58 2.60 -88.96 -0.23 -1.81 16 18 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 19 C 0.17 3.36 5.54 -4.04 -0.02 3.34 16 20 N -0.74 -18.53 5.46 -59.91 -0.33 -18.85 16 21 C -0.33 -9.39 9.99 -15.06 -0.15 -9.54 16 22 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 24 N -0.94 -29.17 13.70 55.49 0.76 -28.41 16 25 Si 1.08 26.15 29.92 -169.99 -5.09 21.06 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.18 1.81 10.71 -17.14 -0.18 1.63 16 30 N -0.54 -5.78 8.61 -12.97 -0.11 -5.90 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.83 6.97 -51.93 -0.36 0.46 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.15 1.42 7.73 -52.48 -0.41 1.01 16 40 H 0.40 3.87 6.41 -40.82 -0.26 3.60 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.11 8.00 -51.92 -0.42 0.70 16 47 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.37 9.23 6.41 -40.82 -0.26 8.97 16 50 H 0.25 7.66 6.77 -40.82 -0.28 7.39 16 51 H 0.16 1.25 6.41 -52.49 -0.34 0.92 16 LS Contribution 414.62 15.07 6.25 6.25 Total: -1.00 -34.35 414.62 -9.43 -43.78 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.21 Total: 9.28 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.35 Total: -6.64 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.06 Total: -61.94 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.09 Total: -11.79 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.09 Total: 21.06 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.35 -9.43 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482679049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.141 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds