Wall clock time and date at job start Wed Apr 1 2020 04:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 O 1.42893 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.35652 * 117.00540 * 179.97438 * 4 3 2 6 6 C 1.39346 * 120.53619 * 0.02562 * 5 4 3 7 7 C 1.38304 * 118.43474 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.45043 * 0.02562 * 7 6 5 9 9 N 1.31374 * 121.06192 * 359.97294 * 8 7 6 10 10 C 1.32858 * 121.70221 * 359.74958 * 9 8 7 11 11 C 1.47834 * 119.78734 * 180.29147 * 10 9 8 12 12 O 1.21555 * 119.99572 * 175.30572 * 11 10 9 13 13 N 1.34776 * 119.99924 * 355.30614 * 11 10 9 14 14 C 1.48117 * 127.03197 * 185.01420 * 13 11 10 15 15 C 1.54599 * 103.41866 * 219.28362 * 14 13 11 16 16 C 1.54613 * 102.91395 * 322.86504 * 15 14 13 17 17 C 1.52998 * 110.41482 * 262.76496 * 16 15 14 18 18 C 1.52998 * 110.32617 * 140.59209 * 16 15 14 19 19 N 1.46506 * 109.46978 * 182.92665 * 18 16 15 20 20 C 1.36937 * 119.99755 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99796 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00109 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47244 * 90.00150 * 24 22 20 26 26 H 1.48492 * 109.47369 * 210.00380 * 24 22 20 27 27 H 1.48508 * 109.47243 * 330.00424 * 24 22 20 28 28 C 1.47488 * 127.03333 * 5.32166 * 13 11 10 29 29 H 1.08996 * 109.47499 * 300.00008 * 1 2 3 30 30 H 1.09003 * 109.47631 * 60.00320 * 1 2 3 31 31 H 1.09006 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47499 * 239.99992 * 2 1 3 33 33 H 1.08997 * 109.47435 * 119.99273 * 2 1 3 34 34 H 1.09002 * 109.47690 * 59.99609 * 3 2 1 35 35 H 1.09003 * 109.47125 * 299.99969 * 3 2 1 36 36 H 1.07997 * 120.77915 * 0.02562 * 6 5 4 37 37 H 1.08003 * 120.27157 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.46871 * 180.02562 * 8 7 6 39 39 H 1.08999 * 110.66123 * 337.76078 * 14 13 11 40 40 H 1.08994 * 110.66356 * 100.88082 * 14 13 11 41 41 H 1.09001 * 110.82987 * 204.44270 * 15 14 13 42 42 H 1.08998 * 110.73247 * 81.23977 * 15 14 13 43 43 H 1.09003 * 109.47250 * 177.12488 * 17 16 15 44 44 H 1.09001 * 109.47269 * 297.12724 * 17 16 15 45 45 H 1.08998 * 109.47103 * 57.12483 * 17 16 15 46 46 H 1.09000 * 109.47436 * 302.92667 * 18 16 15 47 47 H 1.09000 * 109.47355 * 62.92867 * 18 16 15 48 48 H 0.97002 * 119.99708 * 0.02562 * 19 18 16 49 49 H 0.97000 * 119.99626 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.91465 * 273.87806 * 28 13 11 51 51 H 1.08997 * 109.91173 * 35.16497 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4688 1.4426 0.0006 5 6 4.0847 2.6513 0.0001 6 6 3.3367 3.8270 -0.0003 7 6 4.0094 5.0354 -0.0003 8 6 5.3970 5.0439 -0.0002 9 7 6.0817 3.9227 0.0002 10 6 5.4809 2.7377 0.0056 11 6 6.2931 1.5025 0.0125 12 8 5.7502 0.4187 0.1036 13 7 7.6354 1.5781 -0.0823 14 6 8.5868 0.4484 -0.1939 15 6 9.7743 0.8906 0.6916 16 6 9.8550 2.4118 0.4270 17 6 10.9169 2.7136 -0.6323 18 6 10.1707 3.1608 1.7232 19 7 10.1738 4.6030 1.4655 20 6 10.4345 5.4800 2.4844 21 1 10.6382 5.1085 3.4778 22 6 10.4369 6.8465 2.2404 23 7 10.6879 7.6894 3.2196 24 14 10.0853 7.4890 0.5220 25 1 8.6259 7.7154 0.3671 26 1 10.8095 8.7686 0.3142 27 1 10.5410 6.4937 -0.4816 28 6 8.4578 2.8023 -0.0898 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9565 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 2.2572 3.7953 0.0001 37 1 3.4592 5.9648 -0.0002 38 1 5.9226 5.9874 0.0002 39 1 8.1415 -0.4689 0.1913 40 1 8.9081 0.3168 -1.2271 41 1 10.6946 0.3955 0.3815 42 1 9.5665 0.6923 1.7430 43 1 10.9255 3.7829 -0.8439 44 1 11.8959 2.4085 -0.2627 45 1 10.6859 2.1645 -1.5451 46 1 9.4135 2.9270 2.4716 47 1 11.1506 2.8552 2.0900 48 1 9.9913 4.9366 0.5731 49 1 10.6900 8.6442 3.0490 50 1 8.5331 3.1928 -1.1046 51 1 8.0150 3.5510 0.5670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484111386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:44 Heat of formation + Delta-G solvation = -14.052716 kcal Electronic energy + Delta-G solvation = -31667.107507 eV Core-core repulsion = 27567.651356 eV Total energy + Delta-G solvation = -4099.456151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06669 -39.69325 -38.46099 -37.79000 -34.77373 -34.28727 -32.91171 -32.28540 -30.90263 -30.51880 -29.20250 -27.00605 -26.43395 -25.86550 -24.73319 -23.42350 -22.87074 -21.83168 -21.45827 -19.84744 -18.98342 -18.23972 -17.71297 -17.24530 -16.86734 -16.66298 -15.87069 -15.53319 -15.08153 -14.75468 -14.60626 -14.51060 -14.23149 -14.11348 -13.83819 -13.58933 -13.33578 -13.03289 -13.00582 -12.76153 -12.57275 -12.47091 -12.26177 -12.17349 -11.93230 -11.88836 -11.78852 -11.49997 -11.33474 -11.26045 -11.00217 -10.87453 -10.62514 -10.37307 -10.27263 -10.04995 -10.00104 -9.90390 -9.51574 -9.35295 -8.84279 -8.66122 -8.34065 -7.16093 -5.71868 -3.06074 0.58912 1.09756 2.80500 2.84180 3.06171 3.38561 3.42191 3.46894 3.81566 4.15234 4.37969 4.42509 4.51107 4.60709 4.62988 4.72712 4.79372 4.83164 4.90118 4.95199 5.01793 5.06626 5.17451 5.26558 5.29019 5.44067 5.45323 5.57950 5.59447 5.64370 5.67940 5.71084 5.76485 5.80336 5.85893 5.87908 5.92476 6.07312 6.10568 6.17888 6.24723 6.36020 6.39807 6.58026 6.68551 6.76649 6.86063 7.04549 7.65526 7.75561 8.05416 8.33385 8.47194 9.27157 9.99459 10.20376 11.46915 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.003371 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.290920 B = 8303.041207 C = 9991.005992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.050 3.950 4 O -0.273 6.273 5 C 0.136 3.864 6 C -0.178 4.178 7 C -0.106 4.106 8 C 0.062 3.938 9 N -0.406 5.406 10 C 0.046 3.954 11 C 0.591 3.409 12 O -0.526 6.526 13 N -0.603 5.603 14 C 0.107 3.893 15 C -0.123 4.123 16 C -0.089 4.089 17 C -0.132 4.132 18 C 0.173 3.827 19 N -0.752 5.752 20 C -0.237 4.237 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.937 5.937 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.362 0.638 49 H 0.258 0.742 50 H 0.061 0.939 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.188 -12.836 -10.558 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.025 4.025 4 O -0.183 6.183 5 C 0.085 3.915 6 C -0.205 4.205 7 C -0.126 4.126 8 C -0.098 4.098 9 N -0.117 5.117 10 C -0.092 4.092 11 C 0.379 3.621 12 O -0.402 6.402 13 N -0.336 5.336 14 C -0.016 4.016 15 C -0.162 4.162 16 C -0.090 4.090 17 C -0.190 4.190 18 C 0.046 3.954 19 N -0.398 5.398 20 C -0.367 4.367 21 H 0.106 0.894 22 C -0.193 4.193 23 N -0.585 5.585 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.012 4.012 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.195 0.805 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.549 -13.577 -10.284 23.748 hybrid contribution -1.287 1.105 -1.144 2.046 sum -17.836 -12.472 -11.427 24.582 Atomic orbital electron populations 1.21696 0.94307 1.02565 1.02055 1.21446 0.95678 0.94568 1.04253 1.23015 0.78837 0.99433 1.01251 1.86380 1.20638 1.24786 1.86532 1.19948 0.92116 0.85591 0.93816 1.21706 1.00856 0.91826 1.06076 1.22239 0.95805 0.98405 0.96148 1.22902 0.91381 0.96833 0.98683 1.67949 1.38931 0.97317 1.07550 1.20613 0.88271 0.93010 1.07346 1.17182 0.80423 0.87304 0.77220 1.90803 1.70927 1.28013 1.50477 1.48550 1.04395 1.09603 1.71013 1.22393 0.88932 0.90517 0.99731 1.22726 0.97841 0.95071 1.00521 1.21808 0.94754 0.94894 0.97536 1.21814 0.97984 1.02150 0.97036 1.20660 0.98266 0.84120 0.92372 1.42725 1.86934 1.01022 1.09142 1.19058 1.39609 0.87097 0.90900 0.89357 1.24647 1.02082 0.95746 0.96804 1.69707 1.56430 1.01808 1.30587 0.86574 0.78087 0.78233 0.85834 1.21008 1.21985 1.20277 1.22600 0.89270 0.87328 1.02008 0.92394 0.92479 0.91669 0.90632 0.90493 0.91924 0.92040 0.83844 0.83918 0.81508 0.89979 0.91214 0.89975 0.90526 0.91920 0.92177 0.93278 0.95513 0.95276 0.80497 0.93201 0.92117 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.15 0.37 -0.47 16 2 C -0.12 -0.99 6.30 -26.73 -0.17 -1.16 16 3 C 0.05 0.46 4.76 37.16 0.18 0.63 16 4 O -0.27 -3.79 8.21 -40.55 -0.33 -4.12 16 5 C 0.14 1.91 6.71 -38.55 -0.26 1.65 16 6 C -0.18 -1.91 9.13 -39.15 -0.36 -2.27 16 7 C -0.11 -1.11 10.10 -39.36 -0.40 -1.51 16 8 C 0.06 0.84 11.17 -17.55 -0.20 0.65 16 9 N -0.41 -6.56 6.79 -9.71 -0.07 -6.62 16 10 C 0.05 0.76 6.74 -82.88 -0.56 0.20 16 11 C 0.59 10.44 7.86 -12.33 -0.10 10.34 16 12 O -0.53 -10.16 15.35 -16.58 -0.25 -10.41 16 13 N -0.60 -9.74 3.29 -171.09 -0.56 -10.31 16 14 C 0.11 1.42 7.09 -2.31 -0.02 1.41 16 15 C -0.12 -1.59 6.16 -25.04 -0.15 -1.75 16 16 C -0.09 -1.38 0.68 -153.14 -0.10 -1.49 16 17 C -0.13 -1.91 8.04 37.16 0.30 -1.61 16 18 C 0.17 3.38 4.90 -4.04 -0.02 3.36 16 19 N -0.75 -17.61 4.68 -59.91 -0.28 -17.89 16 20 C -0.24 -6.66 10.47 -15.06 -0.16 -6.81 16 21 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -29.34 13.97 55.49 0.78 -28.57 16 24 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 28 C 0.11 1.82 4.78 -2.98 -0.01 1.81 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 35 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 36 H 0.14 1.07 6.46 -52.49 -0.34 0.73 16 37 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.08 1.09 7.81 -51.93 -0.41 0.69 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.88 7.86 -51.93 -0.41 0.48 16 42 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 43 H 0.06 1.02 6.99 -51.93 -0.36 0.66 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.36 8.25 4.13 -40.82 -0.17 8.08 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 51 H 0.11 2.16 5.35 -51.93 -0.28 1.89 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -34.72 404.49 -9.33 -44.04 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.23 Total: 7.80 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.75 Total: 2.96 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.13 Total: -63.39 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.59 Total: -14.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.72 -9.33 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484111386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.988 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds