Wall clock time and date at job start Wed Apr 1 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 O 1.42893 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.35652 * 117.00540 * 179.97438 * 4 3 2 6 6 C 1.39346 * 120.53619 * 0.02562 * 5 4 3 7 7 C 1.38304 * 118.43474 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.45043 * 0.02562 * 7 6 5 9 9 N 1.31374 * 121.06192 * 359.97294 * 8 7 6 10 10 C 1.32858 * 121.70221 * 359.74958 * 9 8 7 11 11 C 1.47834 * 119.78734 * 180.29147 * 10 9 8 12 12 O 1.21555 * 119.99572 * 175.30572 * 11 10 9 13 13 N 1.34776 * 119.99924 * 355.30614 * 11 10 9 14 14 C 1.48117 * 127.03197 * 185.01420 * 13 11 10 15 15 C 1.54599 * 103.41866 * 219.28362 * 14 13 11 16 16 C 1.54613 * 102.91395 * 322.86504 * 15 14 13 17 17 C 1.52998 * 110.41482 * 262.76496 * 16 15 14 18 18 C 1.52998 * 110.32617 * 140.59209 * 16 15 14 19 19 N 1.46506 * 109.46978 * 182.92665 * 18 16 15 20 20 C 1.36937 * 119.99755 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99796 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00109 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47244 * 90.00150 * 24 22 20 26 26 H 1.48492 * 109.47369 * 210.00380 * 24 22 20 27 27 H 1.48508 * 109.47243 * 330.00424 * 24 22 20 28 28 C 1.47488 * 127.03333 * 5.32166 * 13 11 10 29 29 H 1.08996 * 109.47499 * 300.00008 * 1 2 3 30 30 H 1.09003 * 109.47631 * 60.00320 * 1 2 3 31 31 H 1.09006 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47499 * 239.99992 * 2 1 3 33 33 H 1.08997 * 109.47435 * 119.99273 * 2 1 3 34 34 H 1.09002 * 109.47690 * 59.99609 * 3 2 1 35 35 H 1.09003 * 109.47125 * 299.99969 * 3 2 1 36 36 H 1.07997 * 120.77915 * 0.02562 * 6 5 4 37 37 H 1.08003 * 120.27157 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.46871 * 180.02562 * 8 7 6 39 39 H 1.08999 * 110.66123 * 337.76078 * 14 13 11 40 40 H 1.08994 * 110.66356 * 100.88082 * 14 13 11 41 41 H 1.09001 * 110.82987 * 204.44270 * 15 14 13 42 42 H 1.08998 * 110.73247 * 81.23977 * 15 14 13 43 43 H 1.09003 * 109.47250 * 177.12488 * 17 16 15 44 44 H 1.09001 * 109.47269 * 297.12724 * 17 16 15 45 45 H 1.08998 * 109.47103 * 57.12483 * 17 16 15 46 46 H 1.09000 * 109.47436 * 302.92667 * 18 16 15 47 47 H 1.09000 * 109.47355 * 62.92867 * 18 16 15 48 48 H 0.97002 * 119.99708 * 0.02562 * 19 18 16 49 49 H 0.97000 * 119.99626 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.91465 * 273.87806 * 28 13 11 51 51 H 1.08997 * 109.91173 * 35.16497 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4688 1.4426 0.0006 5 6 4.0847 2.6513 0.0001 6 6 3.3367 3.8270 -0.0003 7 6 4.0094 5.0354 -0.0003 8 6 5.3970 5.0439 -0.0002 9 7 6.0817 3.9227 0.0002 10 6 5.4809 2.7377 0.0056 11 6 6.2931 1.5025 0.0125 12 8 5.7502 0.4187 0.1036 13 7 7.6354 1.5781 -0.0823 14 6 8.5868 0.4484 -0.1939 15 6 9.7743 0.8906 0.6916 16 6 9.8550 2.4118 0.4270 17 6 10.9169 2.7136 -0.6323 18 6 10.1707 3.1608 1.7232 19 7 10.1738 4.6030 1.4655 20 6 10.4345 5.4800 2.4844 21 1 10.6382 5.1085 3.4778 22 6 10.4369 6.8465 2.2404 23 7 10.6879 7.6894 3.2196 24 14 10.0853 7.4890 0.5220 25 1 8.6259 7.7154 0.3671 26 1 10.8095 8.7686 0.3142 27 1 10.5410 6.4937 -0.4816 28 6 8.4578 2.8023 -0.0898 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9565 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 2.2572 3.7953 0.0001 37 1 3.4592 5.9648 -0.0002 38 1 5.9226 5.9874 0.0002 39 1 8.1415 -0.4689 0.1913 40 1 8.9081 0.3168 -1.2271 41 1 10.6946 0.3955 0.3815 42 1 9.5665 0.6923 1.7430 43 1 10.9255 3.7829 -0.8439 44 1 11.8959 2.4085 -0.2627 45 1 10.6859 2.1645 -1.5451 46 1 9.4135 2.9270 2.4716 47 1 11.1506 2.8552 2.0900 48 1 9.9913 4.9366 0.5731 49 1 10.6900 8.6442 3.0490 50 1 8.5331 3.1928 -1.1046 51 1 8.0150 3.5510 0.5670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484111386.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:43 Heat of formation + Delta-G solvation = -35.300242 kcal Electronic energy + Delta-G solvation = -31668.028869 eV Core-core repulsion = 27567.651356 eV Total energy + Delta-G solvation = -4100.377513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.09533 -40.86695 -39.40659 -39.11197 -36.49772 -34.94952 -34.35908 -33.55506 -32.56673 -31.63501 -30.41368 -27.84579 -27.66970 -27.28541 -25.95500 -24.61789 -24.05595 -23.15132 -22.37340 -21.00084 -20.48943 -19.44472 -19.13684 -18.55909 -17.87362 -17.49208 -17.01047 -16.74616 -16.53278 -16.09284 -15.90776 -15.61967 -15.44110 -15.13614 -15.07372 -14.81923 -14.61167 -14.32500 -14.22018 -13.97030 -13.80508 -13.66194 -13.30252 -13.10926 -13.07076 -12.98773 -12.89253 -12.79867 -12.62674 -12.55102 -12.13158 -11.98087 -11.86673 -11.79556 -11.65139 -11.52699 -11.42531 -11.22382 -10.94254 -10.88929 -10.42402 -9.80275 -9.45608 -9.23815 -7.97553 -5.30300 -0.40724 0.16027 1.41413 1.45039 1.52611 1.67357 1.86694 2.02178 2.53442 2.75377 3.06872 3.33593 3.43440 3.51515 3.61193 3.71739 3.78562 3.89148 3.90709 3.96450 4.01941 4.10441 4.23358 4.30095 4.34392 4.37505 4.43357 4.48730 4.51125 4.72720 4.75368 4.78082 4.83656 4.87146 4.92193 4.94444 4.99085 5.07683 5.10756 5.13056 5.14574 5.19022 5.27347 5.32299 5.35519 5.45622 5.57017 5.79739 6.17825 6.25687 6.43600 6.68782 7.10165 7.12982 7.88354 8.10103 9.24373 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.003371 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.290920 B = 8303.041207 C = 9991.005992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.041 3.959 4 O -0.301 6.301 5 C 0.130 3.870 6 C -0.168 4.168 7 C -0.085 4.085 8 C 0.042 3.958 9 N -0.433 5.433 10 C 0.005 3.995 11 C 0.581 3.419 12 O -0.556 6.556 13 N -0.606 5.606 14 C 0.104 3.896 15 C -0.112 4.112 16 C -0.082 4.082 17 C -0.128 4.128 18 C 0.173 3.827 19 N -0.749 5.749 20 C -0.230 4.230 21 H 0.051 0.949 22 C -0.063 4.063 23 N -0.986 5.986 24 Si 0.950 3.050 25 H -0.267 1.267 26 H -0.299 1.299 27 H -0.252 1.252 28 C 0.118 3.882 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.172 0.828 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.008 0.992 47 H 0.031 0.969 48 H 0.368 0.632 49 H 0.257 0.743 50 H 0.066 0.934 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 -12.876 -13.090 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.033 4.033 4 O -0.212 6.212 5 C 0.079 3.921 6 C -0.195 4.195 7 C -0.104 4.104 8 C -0.120 4.120 9 N -0.145 5.145 10 C -0.132 4.132 11 C 0.370 3.630 12 O -0.435 6.435 13 N -0.338 5.338 14 C -0.017 4.017 15 C -0.151 4.151 16 C -0.083 4.083 17 C -0.185 4.185 18 C 0.047 3.953 19 N -0.395 5.395 20 C -0.361 4.361 21 H 0.069 0.931 22 C -0.254 4.254 23 N -0.637 5.637 24 Si 0.777 3.223 25 H -0.193 1.193 26 H -0.226 1.226 27 H -0.176 1.176 28 C -0.005 4.005 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.200 0.800 37 H 0.203 0.797 38 H 0.189 0.811 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.026 0.974 47 H 0.049 0.951 48 H 0.202 0.798 49 H 0.066 0.934 50 H 0.085 0.915 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.324 -13.680 -12.834 26.223 hybrid contribution -0.797 1.086 -0.238 1.368 sum -19.122 -12.594 -13.072 26.365 Atomic orbital electron populations 1.21665 0.92035 1.03259 1.03001 1.21472 0.97507 0.94020 1.02949 1.23351 0.76655 1.00308 1.03003 1.86354 1.23146 1.25299 1.86397 1.20127 0.91761 0.86806 0.93424 1.22129 1.02527 0.90476 1.04329 1.22645 0.94634 1.00052 0.93113 1.23226 0.93128 0.96289 0.99355 1.67819 1.40217 0.97901 1.08546 1.20527 0.89427 0.92618 1.10667 1.17581 0.80936 0.87702 0.76750 1.90759 1.71497 1.29096 1.52165 1.48658 1.04418 1.10275 1.70487 1.22587 0.88320 0.89674 1.01122 1.22706 0.99182 0.93075 1.00125 1.21718 0.94800 0.96035 0.95745 1.21789 0.97795 1.01314 0.97637 1.20751 0.97609 0.82490 0.94484 1.42645 1.86564 1.02071 1.08235 1.18992 1.38450 0.88066 0.90581 0.93143 1.25480 1.02550 0.95889 1.01502 1.69900 1.58398 1.02056 1.33379 0.85475 0.78663 0.77504 0.80657 1.19281 1.22559 1.17636 1.22436 0.89379 0.87064 1.01648 0.91579 0.91321 0.91185 0.91741 0.92095 0.90319 0.89841 0.80027 0.79711 0.81051 0.90200 0.88878 0.86725 0.91479 0.93833 0.91247 0.90450 0.97412 0.95124 0.79806 0.93424 0.91546 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.89 6.30 30.59 0.19 -1.70 16 3 C 0.04 0.68 4.76 71.98 0.34 1.02 16 4 O -0.30 -8.29 8.21 -68.73 -0.56 -8.86 16 5 C 0.13 3.57 6.71 22.94 0.15 3.72 16 6 C -0.17 -3.13 9.13 22.55 0.21 -2.93 16 7 C -0.08 -1.52 10.10 22.41 0.23 -1.29 16 8 C 0.04 1.07 11.17 84.89 0.95 2.02 16 9 N -0.43 -14.04 6.79 -184.63 -1.25 -15.30 16 10 C 0.00 0.15 6.74 41.93 0.28 0.44 16 11 C 0.58 21.12 7.86 86.78 0.68 21.80 16 12 O -0.56 -22.27 15.35 17.04 0.26 -22.00 16 13 N -0.61 -19.62 3.29 -813.50 -2.68 -22.30 16 14 C 0.10 2.65 7.09 86.61 0.61 3.27 16 15 C -0.11 -2.72 6.16 31.69 0.20 -2.53 16 16 C -0.08 -2.45 0.68 -51.29 -0.03 -2.49 16 17 C -0.13 -3.35 8.04 71.98 0.58 -2.77 16 18 C 0.17 6.81 4.90 86.38 0.42 7.24 16 19 N -0.75 -35.24 4.68 -343.44 -1.61 -36.84 16 20 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 21 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 22 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 23 N -0.99 -63.53 13.97 21.65 0.30 -63.23 16 24 Si 0.95 44.77 27.74 68.60 1.90 46.67 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 28 C 0.12 3.83 4.78 86.53 0.41 4.24 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.03 7.70 -2.39 -0.02 1.01 16 35 H 0.08 1.00 7.70 -2.39 -0.02 0.98 16 36 H 0.18 1.88 6.46 -2.91 -0.02 1.86 16 37 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 39 H 0.08 2.08 7.81 -2.39 -0.02 2.07 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.11 2.07 7.86 -2.39 -0.02 2.05 16 42 H 0.07 1.76 7.86 -2.39 -0.02 1.74 16 43 H 0.04 1.31 6.99 -2.39 -0.02 1.29 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.01 0.34 8.13 -2.39 -0.02 0.32 16 47 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.37 16.44 4.13 -92.71 -0.38 16.06 16 49 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 50 H 0.07 2.07 7.68 -2.39 -0.02 2.05 16 51 H 0.09 3.40 5.35 -2.39 -0.01 3.39 16 Total: -1.00 -80.21 404.49 4.13 -76.08 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.48 Total: 32.02 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 7.28 Total: 13.76 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -5.24 Total: -137.67 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.30 Total: -30.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -80.21 4.13 -76.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484111386.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.779 kcal (2) G-P(sol) polarization free energy of solvation -80.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds