Wall clock time and date at job start Wed Apr 1 2020 04:56:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47080 * 2 1
4 4 O 1.42898 * 109.47293 * 179.97438 * 3 2 1
5 5 C 1.35649 * 116.99978 * 179.97438 * 4 3 2
6 6 C 1.39335 * 120.54288 * 0.27341 * 5 4 3
7 7 C 1.38305 * 118.43910 * 180.27688 * 6 5 4
8 8 C 1.38766 * 119.44498 * 359.73721 * 7 6 5
9 9 N 1.31371 * 121.06678 * 359.96812 * 8 7 6
10 10 C 1.32858 * 121.69666 * 0.03121 * 9 8 7
11 11 C 1.47829 * 119.78284 * 179.97438 * 10 9 8
12 12 O 1.21559 * 119.99708 * 179.97438 * 11 10 9
13 13 N 1.34774 * 120.00291 * 359.97438 * 11 10 9
14 14 C 1.47026 * 125.64437 * 0.03934 * 13 11 10
15 15 C 1.54376 * 107.28470 * 178.87461 * 14 13 11
16 16 C 1.55154 * 102.92392 * 337.86069 * 15 14 13
17 17 H 1.08996 * 111.00484 * 277.36492 * 16 15 14
18 18 C 1.52992 * 111.00598 * 153.54525 * 16 15 14
19 19 C 1.53004 * 109.47319 * 178.17997 * 18 16 15
20 20 N 1.46499 * 109.47198 * 180.02562 * 19 18 16
21 21 C 1.36931 * 120.00122 * 180.02562 * 20 19 18
22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 19
23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 19
24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20
26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21
27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21
28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21
29 29 C 1.47421 * 125.65152 * 180.02562 * 13 11 10
30 30 H 1.09002 * 109.47132 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47642 * 300.00666 * 1 2 3
32 32 H 1.09007 * 109.47044 * 60.00416 * 1 2 3
33 33 H 1.09004 * 109.47324 * 240.00176 * 2 1 3
34 34 H 1.08990 * 109.47155 * 119.99531 * 2 1 3
35 35 H 1.08992 * 109.47177 * 59.99577 * 3 2 1
36 36 H 1.09007 * 109.46843 * 299.99708 * 3 2 1
37 37 H 1.08004 * 120.78329 * 0.02562 * 6 5 4
38 38 H 1.08005 * 120.27570 * 179.70481 * 7 6 5
39 39 H 1.08000 * 119.46564 * 179.97438 * 8 7 6
40 40 H 1.08998 * 109.88432 * 298.32029 * 14 13 11
41 41 H 1.08992 * 109.88400 * 59.33544 * 14 13 11
42 42 H 1.08998 * 110.75118 * 219.48640 * 15 14 13
43 43 H 1.09001 * 110.70134 * 96.20622 * 15 14 13
44 44 H 1.09000 * 109.47364 * 58.18017 * 18 16 15
45 45 H 1.08998 * 109.47610 * 298.18079 * 18 16 15
46 46 H 1.08995 * 109.46638 * 60.00097 * 19 18 16
47 47 H 1.08998 * 109.46846 * 300.00550 * 19 18 16
48 48 H 0.97001 * 119.99790 * 359.97438 * 20 19 18
49 49 H 0.97005 * 119.99717 * 180.02562 * 24 23 21
50 50 H 1.08998 * 110.36669 * 85.32391 * 29 13 11
51 51 H 1.08996 * 110.45856 * 323.04893 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4426 0.0006
5 6 4.0847 2.6513 0.0001
6 6 3.3369 3.8269 0.0049
7 6 4.0096 5.0354 -0.0017
8 6 5.3972 5.0437 -0.0071
9 7 6.0819 3.9225 -0.0055
10 6 5.4809 2.7376 0.0007
11 6 6.2931 1.5024 0.0017
12 8 5.7474 0.4163 0.0079
13 7 7.6386 1.5805 -0.0042
14 6 8.4247 2.8230 -0.0112
15 6 9.9154 2.4227 0.0126
16 6 9.8801 0.9876 0.6014
17 1 9.8284 1.0130 1.6898
18 6 11.0862 0.1721 0.1314
19 6 11.0405 -1.2188 0.7673
20 7 12.1958 -1.9994 0.3177
21 6 12.3672 -3.2845 0.7586
22 1 11.6505 -3.7227 1.4374
23 6 13.4622 -4.0240 0.3331
24 7 14.3353 -3.4902 -0.4946
25 14 13.6918 -5.7796 0.9284
26 1 14.9249 -6.3487 0.3277
27 1 13.8126 -5.7886 2.4085
28 1 12.5206 -6.5973 0.5223
29 6 8.5658 0.4344 -0.0046
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8901
33 1 1.8934 -0.5138 -0.8900
34 1 1.8933 -0.5137 0.8899
35 1 1.6766 1.9564 0.8899
36 1 1.6766 1.9564 -0.8901
37 1 2.2574 3.7953 0.0094
38 1 3.4594 5.9648 -0.0031
39 1 5.9228 5.9872 -0.0127
40 1 8.2081 3.3936 -0.9142
41 1 8.1849 3.4183 0.8698
42 1 10.4845 3.0909 0.6590
43 1 10.3286 2.4156 -0.9960
44 1 12.0049 0.6776 0.4291
45 1 11.0595 0.0764 -0.9540
46 1 10.1219 -1.7243 0.4696
47 1 11.0672 -1.1231 1.8527
48 1 12.8389 -1.6063 -0.2928
49 1 15.1003 -4.0071 -0.7923
50 1 8.7353 0.0839 -1.0227
51 1 8.1736 -0.3731 0.6135
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001501612054.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:56:16
Heat of formation + Delta-G solvation = -26.105013 kcal
Electronic energy + Delta-G solvation = -29982.674472 eV
Core-core repulsion = 25882.695693 eV
Total energy + Delta-G solvation = -4099.978778 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.29787 -39.65044 -38.67139 -37.55236 -35.04513 -34.39423 -33.20079 -32.44895
-31.05610 -30.69167 -29.35089 -27.34646 -27.00805 -25.26925 -23.90063 -23.27583
-22.82903 -21.84422 -21.13530 -20.28164 -19.82806 -18.47583 -17.71077 -17.16715
-17.01258 -16.80829 -16.03394 -15.80027 -15.38164 -14.97008 -14.75081 -14.61030
-14.45133 -14.15222 -13.84070 -13.57413 -13.37551 -13.26515 -13.18067 -12.92191
-12.74938 -12.56365 -12.49671 -12.36357 -12.07064 -12.00295 -11.56751 -11.43861
-11.21231 -11.10683 -10.94997 -10.74752 -10.57688 -10.41361 -10.27119 -10.25157
-10.21889 -9.91445 -9.70764 -9.58649 -8.88914 -8.78655 -8.46498 -6.83727
-5.69049 -2.97120 0.31336 0.80452 2.62543 2.64933 2.92414 3.50160
3.53761 3.55361 3.56695 3.87476 4.11806 4.21705 4.41319 4.43074
4.50260 4.63039 4.66154 4.70805 4.72443 4.78990 4.93100 4.94848
4.98509 5.07206 5.18746 5.37569 5.42251 5.50769 5.51621 5.56176
5.62177 5.64685 5.67913 5.77197 5.79170 5.87234 5.93623 5.98856
6.04374 6.05790 6.23634 6.33301 6.37207 6.46778 6.53412 6.83337
6.94690 6.98658 7.35773 7.56750 7.77400 8.19941 8.50420 9.61083
10.20221 10.54860 11.53986
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012634 B = 0.002037 C = 0.001772
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2215.653652 B =13741.585991 C =15800.993449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.124 4.124
3 C 0.051 3.949
4 O -0.270 6.270
5 C 0.141 3.859
6 C -0.178 4.178
7 C -0.108 4.108
8 C 0.053 3.947
9 N -0.414 5.414
10 C 0.048 3.952
11 C 0.581 3.419
12 O -0.516 6.516
13 N -0.602 5.602
14 C 0.120 3.880
15 C -0.134 4.134
16 C -0.094 4.094
17 H 0.084 0.916
18 C -0.114 4.114
19 C 0.151 3.849
20 N -0.734 5.734
21 C -0.237 4.237
22 H 0.069 0.931
23 C -0.017 4.017
24 N -0.935 5.935
25 Si 0.908 3.092
26 H -0.291 1.291
27 H -0.286 1.286
28 H -0.286 1.286
29 C 0.111 3.889
30 H 0.066 0.934
31 H 0.056 0.944
32 H 0.056 0.944
33 H 0.077 0.923
34 H 0.077 0.923
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.145 0.855
38 H 0.142 0.858
39 H 0.165 0.835
40 H 0.071 0.929
41 H 0.073 0.927
42 H 0.081 0.919
43 H 0.076 0.924
44 H 0.068 0.932
45 H 0.065 0.935
46 H 0.020 0.980
47 H 0.018 0.982
48 H 0.383 0.617
49 H 0.255 0.745
50 H 0.073 0.927
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.641 22.925 0.265 35.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.161 4.161
3 C -0.025 4.025
4 O -0.180 6.180
5 C 0.090 3.910
6 C -0.205 4.205
7 C -0.128 4.128
8 C -0.108 4.108
9 N -0.126 5.126
10 C -0.091 4.091
11 C 0.368 3.632
12 O -0.391 6.391
13 N -0.335 5.335
14 C -0.003 4.003
15 C -0.172 4.172
16 C -0.114 4.114
17 H 0.102 0.898
18 C -0.152 4.152
19 C 0.023 3.977
20 N -0.378 5.378
21 C -0.368 4.368
22 H 0.087 0.913
23 C -0.212 4.212
24 N -0.584 5.584
25 Si 0.739 3.261
26 H -0.217 1.217
27 H -0.213 1.213
28 H -0.213 1.213
29 C -0.011 4.011
30 H 0.085 0.915
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.096 0.904
34 H 0.096 0.904
35 H 0.081 0.919
36 H 0.081 0.919
37 H 0.163 0.837
38 H 0.160 0.840
39 H 0.182 0.818
40 H 0.089 0.911
41 H 0.091 0.909
42 H 0.099 0.901
43 H 0.095 0.905
44 H 0.087 0.913
45 H 0.084 0.916
46 H 0.037 0.963
47 H 0.035 0.965
48 H 0.217 0.783
49 H 0.064 0.936
50 H 0.091 0.909
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -27.068 21.918 0.341 34.831
hybrid contribution -0.760 -0.463 0.095 0.895
sum -27.828 21.455 0.436 35.141
Atomic orbital electron populations
1.21695 0.94212 1.02732 1.01959 1.21467 0.95741 0.94377 1.04531
1.23055 0.78488 0.99728 1.01210 1.86425 1.20926 1.24571 1.86076
1.20001 0.92204 0.85766 0.93020 1.21752 1.01072 0.91834 1.05807
1.22211 0.95842 0.98366 0.96354 1.22757 0.91378 0.96557 1.00066
1.67912 1.39272 0.97338 1.08035 1.20654 0.88436 0.92909 1.07052
1.17229 0.80706 0.87321 0.77992 1.90860 1.70773 1.27650 1.49848
1.48296 1.04373 1.09196 1.71684 1.22070 0.89666 0.86030 1.02532
1.22836 0.95291 0.96860 1.02199 1.22337 0.94161 0.94351 1.00530
0.89762 1.21678 0.96325 0.96288 1.00924 1.20691 0.91362 0.89548
0.96089 1.42363 1.26253 1.12800 1.56403 1.19210 1.06054 0.89510
1.22045 0.91260 1.24746 0.97712 0.98551 1.00231 1.69658 1.14639
1.36890 1.37245 0.86253 0.76998 0.84780 0.78093 1.21727 1.21313
1.21276 1.22428 0.88176 0.88791 1.01683 0.91526 0.92461 0.92472
0.90403 0.90396 0.91920 0.91919 0.83739 0.84006 0.81761 0.91088
0.90896 0.90074 0.90482 0.91327 0.91617 0.96252 0.96464 0.78337
0.93555 0.90927 0.90044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16
2 C -0.12 -0.92 6.30 -26.73 -0.17 -1.09 16
3 C 0.05 0.38 4.76 37.16 0.18 0.56 16
4 O -0.27 -3.30 8.20 -40.60 -0.33 -3.63 16
5 C 0.14 1.59 6.71 -38.56 -0.26 1.33 16
6 C -0.18 -1.31 9.13 -39.15 -0.36 -1.67 16
7 C -0.11 -0.62 10.10 -39.36 -0.40 -1.02 16
8 C 0.05 0.38 11.17 -17.55 -0.20 0.18 16
9 N -0.41 -4.37 6.84 -9.71 -0.07 -4.43 16
10 C 0.05 0.62 6.73 -82.88 -0.56 0.07 16
11 C 0.58 9.14 7.83 -12.34 -0.10 9.04 16
12 O -0.52 -9.71 15.39 -16.64 -0.26 -9.97 16
13 N -0.60 -8.59 3.33 -171.59 -0.57 -9.16 16
14 C 0.12 1.36 5.40 -3.03 -0.02 1.34 16
15 C -0.13 -1.45 6.42 -24.87 -0.16 -1.61 16
16 C -0.09 -1.26 3.04 -88.46 -0.27 -1.53 16
17 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
18 C -0.11 -1.85 4.84 -26.73 -0.13 -1.98 16
19 C 0.15 3.15 6.14 -4.04 -0.02 3.12 16
20 N -0.73 -19.40 5.60 -59.91 -0.34 -19.74 16
21 C -0.24 -6.91 9.99 -15.06 -0.15 -7.07 16
22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16
23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16
24 N -0.94 -29.06 13.06 55.49 0.72 -28.33 16
25 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16
26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
29 C 0.11 1.65 5.71 -2.52 -0.01 1.63 16
30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
32 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16
33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.06 0.37 7.69 -51.93 -0.40 -0.03 16
36 H 0.06 0.37 7.71 -51.92 -0.40 -0.03 16
37 H 0.14 0.67 6.46 -52.48 -0.34 0.33 16
38 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16
39 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16
40 H 0.07 0.77 7.54 -51.93 -0.39 0.38 16
41 H 0.07 0.79 7.40 -51.93 -0.38 0.41 16
42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
43 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16
44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
45 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16
46 H 0.02 0.42 7.59 -51.93 -0.39 0.02 16
47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
48 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16
49 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16
50 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16
51 H 0.08 1.33 7.99 -51.93 -0.42 0.91 16
LS Contribution 412.59 15.07 6.22 6.22
Total: -1.00 -36.06 412.59 -10.47 -46.53
By element:
Atomic # 1 Polarization: 12.52 SS G_CDS: -8.48 Total: 4.04 kcal
Atomic # 6 Polarization: 2.71 SS G_CDS: -2.35 Total: 0.36 kcal
Atomic # 7 Polarization: -61.42 SS G_CDS: -0.25 Total: -61.67 kcal
Atomic # 8 Polarization: -13.01 SS G_CDS: -0.59 Total: -13.60 kcal
Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal
Total LS contribution 6.22 Total: 6.22 kcal
Total: -36.06 -10.47 -46.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001501612054.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.423 kcal
(2) G-P(sol) polarization free energy of solvation -36.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.634 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds