Wall clock time and date at job start Wed Apr 1 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47068 * 2 1 4 4 O 1.42901 * 109.47335 * 179.97438 * 3 2 1 5 5 C 1.35643 * 117.00189 * 179.97438 * 4 3 2 6 6 C 1.39338 * 120.54230 * 0.27180 * 5 4 3 7 7 C 1.38303 * 118.44031 * 180.26188 * 6 5 4 8 8 C 1.38771 * 119.44434 * 359.72850 * 7 6 5 9 9 N 1.31369 * 121.06653 * 359.97438 * 8 7 6 10 10 C 1.32860 * 121.69807 * 0.02562 * 9 8 7 11 11 C 1.47833 * 119.78632 * 179.97438 * 10 9 8 12 12 O 1.21558 * 119.99979 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99863 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00044 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.43554 * 32.45262 * 14 13 11 16 16 C 1.54890 * 110.59848 * 269.83809 * 14 13 11 17 17 C 1.54888 * 102.74845 * 203.32368 * 16 14 13 18 18 C 1.54263 * 104.19606 * 37.93987 * 17 16 14 19 19 H 1.09003 * 110.07272 * 95.69767 * 18 17 16 20 20 C 1.53001 * 110.03243 * 217.10385 * 18 17 16 21 21 N 1.46490 * 109.47264 * 292.16632 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 C 1.53877 * 106.59888 * 336.39198 * 18 17 16 31 31 H 1.08999 * 109.47736 * 300.00710 * 1 2 3 32 32 H 1.09004 * 109.46720 * 60.00614 * 1 2 3 33 33 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47591 * 239.99496 * 2 1 3 35 35 H 1.09004 * 109.46720 * 119.99386 * 2 1 3 36 36 H 1.08999 * 109.47421 * 59.99097 * 3 2 1 37 37 H 1.09004 * 109.46849 * 299.99307 * 3 2 1 38 38 H 1.08005 * 120.78256 * 359.96543 * 6 5 4 39 39 H 1.08003 * 120.27953 * 179.74429 * 7 6 5 40 40 H 1.07997 * 119.46594 * 180.02562 * 8 7 6 41 41 H 0.96997 * 119.99648 * 359.97438 * 13 11 10 42 42 H 1.09003 * 110.75396 * 321.63851 * 16 14 13 43 43 H 1.08997 * 110.75901 * 84.82130 * 16 14 13 44 44 H 1.09000 * 110.48442 * 279.26009 * 17 16 14 45 45 H 1.09000 * 110.48713 * 156.61850 * 17 16 14 46 46 H 1.09003 * 109.46836 * 172.16340 * 20 18 17 47 47 H 1.08999 * 109.47071 * 52.17379 * 20 18 17 48 48 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 49 49 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 50 50 H 1.08996 * 110.03408 * 119.28815 * 30 18 17 51 51 H 1.09004 * 110.02872 * 240.66372 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6511 0.0001 6 6 3.3370 3.8268 0.0048 7 6 4.0096 5.0353 -0.0014 8 6 5.3973 5.0436 -0.0063 9 7 6.0819 3.9224 -0.0047 10 6 5.4810 2.7375 0.0013 11 6 6.2931 1.5022 0.0024 12 8 5.7474 0.4161 0.0083 13 7 7.6386 1.5804 -0.0021 14 6 8.4435 0.3563 -0.0005 15 1 7.9307 -0.4371 -0.5442 16 6 8.7508 -0.0919 1.4500 17 6 10.0291 -0.9496 1.2791 18 6 10.8406 -0.2078 0.1970 19 1 11.5744 0.4490 0.6643 20 6 11.5448 -1.2160 -0.7132 21 7 12.5840 -1.9163 0.0455 22 6 13.3508 -2.8724 -0.5652 23 1 13.1898 -3.1099 -1.6063 24 6 14.3352 -3.5364 0.1539 25 7 14.5312 -3.2473 1.4229 26 14 15.3817 -4.8401 -0.6795 27 1 16.3522 -5.3951 0.2979 28 1 14.5072 -5.9303 -1.1815 29 1 16.1172 -4.2319 -1.8171 30 6 9.8324 0.6225 -0.6165 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8898 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9562 -0.8901 38 1 2.2574 3.7952 0.0083 39 1 3.4595 5.9647 -0.0022 40 1 5.9229 5.9870 -0.0108 41 1 8.0740 2.4471 -0.0064 42 1 8.9466 0.7704 2.0874 43 1 7.9322 -0.6891 1.8515 44 1 9.7724 -1.9539 0.9420 45 1 10.5884 -0.9913 2.2138 46 1 11.9996 -0.6912 -1.5534 47 1 10.8184 -1.9380 -1.0863 48 1 12.7285 -1.7033 0.9807 49 1 13.9880 -2.5700 1.8555 50 1 10.0764 1.6823 -0.5435 51 1 9.8455 0.3078 -1.6601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507410384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:56 Heat of formation + Delta-G solvation = -43.089151 kcal Electronic energy + Delta-G solvation = -29816.632909 eV Core-core repulsion = 25715.917644 eV Total energy + Delta-G solvation = -4100.715266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31839 -39.58745 -38.75135 -37.87428 -34.94144 -34.43717 -33.57783 -32.69988 -31.12324 -30.74255 -28.66077 -27.65504 -27.14209 -25.06316 -23.96871 -23.41592 -22.32154 -22.06997 -21.09404 -20.36599 -19.49092 -18.73885 -18.02361 -17.38200 -17.12627 -16.84923 -16.16172 -15.73254 -15.32720 -15.12145 -15.00548 -14.58637 -14.37574 -14.19648 -13.85555 -13.67282 -13.62156 -13.40321 -13.18440 -13.16368 -13.02306 -12.59059 -12.48184 -12.14142 -12.08638 -11.70807 -11.48326 -11.30207 -11.15097 -10.90828 -10.70083 -10.63574 -10.44872 -10.43827 -10.31821 -10.27594 -10.06158 -9.92344 -9.83515 -9.09351 -9.02744 -8.81181 -8.78282 -6.90905 -6.02990 -3.01355 0.25603 0.75335 2.58310 2.58773 3.01381 3.52530 3.56442 3.60541 3.77768 3.86688 4.08450 4.21429 4.36988 4.38728 4.50807 4.64248 4.68235 4.71596 4.76100 4.86469 4.89261 4.91672 5.05431 5.11586 5.15178 5.40269 5.46021 5.52413 5.55837 5.60453 5.62588 5.64329 5.68051 5.72651 5.73087 5.90148 5.90420 5.97695 6.14703 6.15445 6.26543 6.32342 6.50589 6.60565 6.67062 6.78078 6.82190 6.95313 7.25126 7.58642 7.88689 8.20457 8.83883 9.32452 10.18818 10.34605 11.45918 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.001827 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.988096 B =15323.749969 C =16545.833766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.270 6.270 5 C 0.141 3.859 6 C -0.178 4.178 7 C -0.107 4.107 8 C 0.057 3.943 9 N -0.420 5.420 10 C 0.044 3.956 11 C 0.570 3.430 12 O -0.515 6.515 13 N -0.705 5.705 14 C 0.140 3.860 15 H 0.096 0.904 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.097 4.097 19 H 0.072 0.928 20 C 0.165 3.835 21 N -0.743 5.743 22 C -0.329 4.329 23 H 0.063 0.937 24 C -0.048 4.048 25 N -0.946 5.946 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.296 1.296 30 C -0.120 4.120 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.407 0.593 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.017 0.983 47 H 0.021 0.979 48 H 0.367 0.633 49 H 0.254 0.746 50 H 0.068 0.932 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.394 19.682 -2.353 36.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.180 6.180 5 C 0.090 3.910 6 C -0.204 4.204 7 C -0.127 4.127 8 C -0.104 4.104 9 N -0.132 5.132 10 C -0.095 4.095 11 C 0.354 3.646 12 O -0.389 6.389 13 N -0.356 5.356 14 C 0.036 3.964 15 H 0.114 0.886 16 C -0.171 4.171 17 C -0.149 4.149 18 C -0.116 4.116 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.389 5.389 22 C -0.460 4.460 23 H 0.081 0.919 24 C -0.245 4.245 25 N -0.592 5.592 26 Si 0.911 3.089 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.223 1.223 30 C -0.159 4.159 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.183 0.817 41 H 0.243 0.757 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.200 0.800 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.590 17.478 -2.382 33.594 hybrid contribution -2.184 2.003 -0.020 2.964 sum -30.774 19.481 -2.402 36.501 Atomic orbital electron populations 1.21696 0.94188 1.02751 1.01984 1.21464 0.95769 0.94351 1.04497 1.23062 0.78462 0.99749 1.01246 1.86418 1.20946 1.24545 1.86063 1.20021 0.92283 0.85764 0.92947 1.21771 1.01127 0.91855 1.05671 1.22221 0.95804 0.98442 0.96256 1.22710 0.91393 0.96390 0.99934 1.67612 1.39954 0.97413 1.08182 1.20757 0.88608 0.92957 1.07223 1.17607 0.82413 0.87201 0.77385 1.90848 1.71676 1.27484 1.48883 1.45926 1.05411 1.10324 1.73969 1.21960 0.90941 0.86503 0.97037 0.88617 1.22884 0.98333 0.99886 0.96025 1.22315 0.94626 0.99007 0.98924 1.21901 0.96486 0.97001 0.96227 0.90906 1.20733 0.90378 0.92103 0.93073 1.42360 1.40058 1.45826 1.10624 1.20048 1.14513 1.15176 0.96258 0.91872 1.25766 0.99102 1.02919 0.96735 1.70878 1.42783 1.34839 1.10666 0.83236 0.75918 0.75341 0.74371 1.21076 1.22321 1.22345 1.22388 0.92970 1.00286 1.00245 0.92451 0.92452 0.91513 0.90419 0.90412 0.91900 0.91897 0.83690 0.83902 0.81696 0.75698 0.91526 0.91414 0.90886 0.91482 0.96475 0.96145 0.80011 0.93456 0.91381 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.85 6.30 -26.73 -0.17 -1.02 16 3 C 0.05 0.36 4.76 37.16 0.18 0.53 16 4 O -0.27 -3.11 8.20 -40.58 -0.33 -3.44 16 5 C 0.14 1.50 6.71 -38.55 -0.26 1.24 16 6 C -0.18 -1.24 9.13 -39.15 -0.36 -1.59 16 7 C -0.11 -0.59 10.10 -39.36 -0.40 -0.99 16 8 C 0.06 0.40 11.17 -17.55 -0.20 0.20 16 9 N -0.42 -4.28 9.54 -9.71 -0.09 -4.38 16 10 C 0.04 0.53 6.76 -82.88 -0.56 -0.03 16 11 C 0.57 8.16 7.80 -12.33 -0.10 8.06 16 12 O -0.51 -8.91 14.79 -16.64 -0.25 -9.15 16 13 N -0.70 -8.97 5.15 -53.15 -0.27 -9.24 16 14 C 0.14 1.93 3.21 -66.28 -0.21 1.72 16 15 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 16 C -0.13 -1.89 6.58 -24.74 -0.16 -2.05 16 17 C -0.11 -1.81 6.08 -25.07 -0.15 -1.96 16 18 C -0.10 -1.61 2.96 -89.50 -0.26 -1.88 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.16 3.47 5.31 -4.05 -0.02 3.45 16 21 N -0.74 -19.44 5.45 -59.91 -0.33 -19.76 16 22 C -0.33 -9.65 9.99 -15.06 -0.15 -9.80 16 23 H 0.06 1.83 7.83 -52.49 -0.41 1.41 16 24 C -0.05 -1.44 5.50 -17.43 -0.10 -1.54 16 25 N -0.95 -30.02 13.70 55.49 0.76 -29.26 16 26 Si 1.08 26.70 29.92 -169.99 -5.09 21.61 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 30 C -0.12 -1.64 6.19 -25.62 -0.16 -1.79 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 37 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 38 H 0.15 0.61 6.46 -52.48 -0.34 0.27 16 39 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 40 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.41 4.50 7.69 -40.82 -0.31 4.18 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.31 7.76 -51.93 -0.40 0.91 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 48 H 0.37 9.74 6.38 -40.82 -0.26 9.48 16 49 H 0.25 7.95 6.77 -40.82 -0.28 7.67 16 50 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 51 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 LS Contribution 413.33 15.07 6.23 6.23 Total: -1.00 -36.28 413.33 -10.36 -46.64 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.28 Total: 8.50 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.71 Total: -7.75 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.07 Total: -62.64 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.58 Total: -12.59 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -5.09 Total: 21.61 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.28 -10.36 -46.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507410384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.550 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds