Wall clock time and date at job start Wed Apr 1 2020 05:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47068 * 2 1 4 4 O 1.42901 * 109.47335 * 179.97438 * 3 2 1 5 5 C 1.35643 * 117.00189 * 179.97438 * 4 3 2 6 6 C 1.39338 * 120.54230 * 0.27180 * 5 4 3 7 7 C 1.38303 * 118.44031 * 180.26188 * 6 5 4 8 8 C 1.38771 * 119.44434 * 359.72850 * 7 6 5 9 9 N 1.31369 * 121.06653 * 359.97438 * 8 7 6 10 10 C 1.32860 * 121.69807 * 0.02562 * 9 8 7 11 11 C 1.47833 * 119.78632 * 179.97438 * 10 9 8 12 12 O 1.21558 * 119.99979 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99863 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00044 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.43554 * 32.45262 * 14 13 11 16 16 C 1.54890 * 110.59848 * 269.83809 * 14 13 11 17 17 C 1.54888 * 102.74845 * 203.32368 * 16 14 13 18 18 C 1.54263 * 104.19606 * 37.93987 * 17 16 14 19 19 H 1.09003 * 110.07272 * 95.69767 * 18 17 16 20 20 C 1.53001 * 110.03243 * 217.10385 * 18 17 16 21 21 N 1.46490 * 109.47264 * 292.16632 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 C 1.53877 * 106.59888 * 336.39198 * 18 17 16 31 31 H 1.08999 * 109.47736 * 300.00710 * 1 2 3 32 32 H 1.09004 * 109.46720 * 60.00614 * 1 2 3 33 33 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47591 * 239.99496 * 2 1 3 35 35 H 1.09004 * 109.46720 * 119.99386 * 2 1 3 36 36 H 1.08999 * 109.47421 * 59.99097 * 3 2 1 37 37 H 1.09004 * 109.46849 * 299.99307 * 3 2 1 38 38 H 1.08005 * 120.78256 * 359.96543 * 6 5 4 39 39 H 1.08003 * 120.27953 * 179.74429 * 7 6 5 40 40 H 1.07997 * 119.46594 * 180.02562 * 8 7 6 41 41 H 0.96997 * 119.99648 * 359.97438 * 13 11 10 42 42 H 1.09003 * 110.75396 * 321.63851 * 16 14 13 43 43 H 1.08997 * 110.75901 * 84.82130 * 16 14 13 44 44 H 1.09000 * 110.48442 * 279.26009 * 17 16 14 45 45 H 1.09000 * 110.48713 * 156.61850 * 17 16 14 46 46 H 1.09003 * 109.46836 * 172.16340 * 20 18 17 47 47 H 1.08999 * 109.47071 * 52.17379 * 20 18 17 48 48 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 49 49 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 50 50 H 1.08996 * 110.03408 * 119.28815 * 30 18 17 51 51 H 1.09004 * 110.02872 * 240.66372 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6511 0.0001 6 6 3.3370 3.8268 0.0048 7 6 4.0096 5.0353 -0.0014 8 6 5.3973 5.0436 -0.0063 9 7 6.0819 3.9224 -0.0047 10 6 5.4810 2.7375 0.0013 11 6 6.2931 1.5022 0.0024 12 8 5.7474 0.4161 0.0083 13 7 7.6386 1.5804 -0.0021 14 6 8.4435 0.3563 -0.0005 15 1 7.9307 -0.4371 -0.5442 16 6 8.7508 -0.0919 1.4500 17 6 10.0291 -0.9496 1.2791 18 6 10.8406 -0.2078 0.1970 19 1 11.5744 0.4490 0.6643 20 6 11.5448 -1.2160 -0.7132 21 7 12.5840 -1.9163 0.0455 22 6 13.3508 -2.8724 -0.5652 23 1 13.1898 -3.1099 -1.6063 24 6 14.3352 -3.5364 0.1539 25 7 14.5312 -3.2473 1.4229 26 14 15.3817 -4.8401 -0.6795 27 1 16.3522 -5.3951 0.2979 28 1 14.5072 -5.9303 -1.1815 29 1 16.1172 -4.2319 -1.8171 30 6 9.8324 0.6225 -0.6165 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8898 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9562 -0.8901 38 1 2.2574 3.7952 0.0083 39 1 3.4595 5.9647 -0.0022 40 1 5.9229 5.9870 -0.0108 41 1 8.0740 2.4471 -0.0064 42 1 8.9466 0.7704 2.0874 43 1 7.9322 -0.6891 1.8515 44 1 9.7724 -1.9539 0.9420 45 1 10.5884 -0.9913 2.2138 46 1 11.9996 -0.6912 -1.5534 47 1 10.8184 -1.9380 -1.0863 48 1 12.7285 -1.7033 0.9807 49 1 13.9880 -2.5700 1.8555 50 1 10.0764 1.6823 -0.5435 51 1 9.8455 0.3078 -1.6601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507410384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:55 Heat of formation + Delta-G solvation = -66.638176 kcal Electronic energy + Delta-G solvation = -29817.654072 eV Core-core repulsion = 25715.917644 eV Total energy + Delta-G solvation = -4101.736428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.01734 -40.65108 -39.43460 -39.11911 -36.73976 -35.07728 -34.83616 -33.48222 -32.72972 -31.58352 -30.11647 -28.98999 -27.65097 -26.24621 -25.44959 -24.22886 -24.00612 -22.71447 -21.97665 -21.50353 -20.89449 -19.51347 -19.26775 -18.78361 -18.09924 -17.44868 -17.29088 -16.92957 -16.44689 -16.17747 -15.85958 -15.60296 -15.50987 -15.29372 -15.11022 -15.02679 -14.90476 -14.63623 -14.39008 -14.13289 -13.67600 -13.62256 -13.08712 -13.06709 -13.00751 -12.82343 -12.61032 -12.56572 -12.50716 -12.12734 -11.98155 -11.87141 -11.85572 -11.80176 -11.66879 -11.52671 -11.31517 -11.18431 -10.91474 -10.85807 -10.65435 -10.10573 -9.51692 -9.10598 -8.40907 -5.33756 -0.39202 0.19635 1.57581 1.68195 1.72682 1.84735 1.98890 2.07436 2.71260 2.79913 3.16471 3.38603 3.50259 3.51119 3.56679 3.67828 3.79533 3.87372 3.92489 3.96653 4.01483 4.11781 4.21903 4.30219 4.39155 4.41747 4.46476 4.48677 4.49565 4.52663 4.58058 4.65104 4.72715 4.82505 4.87444 4.95022 4.99318 4.99585 5.04392 5.10293 5.12552 5.16257 5.28194 5.28441 5.42542 5.43659 5.52396 5.57984 6.20145 6.43549 6.49318 6.79191 7.09890 7.19910 8.00830 8.11978 9.11341 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.001827 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.988096 B =15323.749969 C =16545.833766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.045 3.955 4 O -0.306 6.306 5 C 0.124 3.876 6 C -0.174 4.174 7 C -0.086 4.086 8 C 0.054 3.946 9 N -0.437 5.437 10 C 0.003 3.997 11 C 0.564 3.436 12 O -0.558 6.558 13 N -0.695 5.695 14 C 0.146 3.854 15 H 0.075 0.925 16 C -0.120 4.120 17 C -0.108 4.108 18 C -0.087 4.087 19 H 0.075 0.925 20 C 0.163 3.837 21 N -0.755 5.755 22 C -0.337 4.337 23 H 0.064 0.936 24 C -0.106 4.106 25 N -0.974 5.974 26 Si 1.130 2.870 27 H -0.291 1.291 28 H -0.279 1.279 29 H -0.276 1.276 30 C -0.108 4.108 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.175 0.825 39 H 0.189 0.811 40 H 0.198 0.802 41 H 0.417 0.583 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.020 0.980 47 H 0.014 0.986 48 H 0.362 0.638 49 H 0.244 0.756 50 H 0.095 0.905 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.165 22.816 -3.156 39.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.030 4.030 4 O -0.217 6.217 5 C 0.073 3.927 6 C -0.200 4.200 7 C -0.105 4.105 8 C -0.109 4.109 9 N -0.149 5.149 10 C -0.133 4.133 11 C 0.350 3.650 12 O -0.436 6.436 13 N -0.347 5.347 14 C 0.041 3.959 15 H 0.093 0.907 16 C -0.159 4.159 17 C -0.146 4.146 18 C -0.106 4.106 19 H 0.094 0.906 20 C 0.037 3.963 21 N -0.400 5.400 22 C -0.469 4.469 23 H 0.082 0.918 24 C -0.297 4.297 25 N -0.622 5.622 26 Si 0.954 3.046 27 H -0.217 1.217 28 H -0.205 1.205 29 H -0.202 1.202 30 C -0.146 4.146 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.193 0.807 39 H 0.206 0.794 40 H 0.215 0.785 41 H 0.255 0.745 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.031 0.969 48 H 0.194 0.806 49 H 0.054 0.946 50 H 0.113 0.887 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -30.387 20.647 -3.211 36.877 hybrid contribution -1.747 1.164 0.212 2.110 sum -32.134 21.810 -2.999 38.952 Atomic orbital electron populations 1.21661 0.92008 1.03169 1.03096 1.21485 0.97581 0.94447 1.02756 1.23294 0.76760 0.99878 1.03025 1.86378 1.23063 1.25855 1.86392 1.20272 0.92191 0.86726 0.93545 1.22165 1.02506 0.90916 1.04433 1.22747 0.95380 0.99575 0.92840 1.23421 0.92620 0.96434 0.98379 1.67548 1.40779 0.97607 1.08981 1.20414 0.89131 0.92633 1.11121 1.18110 0.82704 0.87844 0.76298 1.90809 1.72452 1.29339 1.50986 1.45785 1.05124 1.10183 1.73594 1.21723 0.91059 0.86713 0.96376 0.90702 1.22769 0.96739 0.99776 0.96633 1.22222 0.95604 0.98275 0.98502 1.21781 0.96855 0.96173 0.95776 0.90637 1.20892 0.89274 0.92544 0.93619 1.42559 1.40845 1.45841 1.10726 1.20417 1.14566 1.15443 0.96454 0.91791 1.27274 1.00723 1.05009 0.96683 1.70990 1.43638 1.35679 1.11863 0.82612 0.74655 0.73443 0.73902 1.21684 1.20540 1.20231 1.22280 0.91523 1.01231 0.99582 0.91306 0.91272 0.91514 0.92181 0.92226 0.89980 0.89937 0.80750 0.79423 0.78480 0.74527 0.90030 0.92331 0.93118 0.92094 0.96231 0.96854 0.80608 0.94606 0.88671 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.79 6.30 30.59 0.19 -1.60 16 3 C 0.04 0.60 4.76 71.98 0.34 0.95 16 4 O -0.31 -7.25 8.20 -68.58 -0.56 -7.82 16 5 C 0.12 2.56 6.71 22.93 0.15 2.72 16 6 C -0.17 -1.88 9.13 22.55 0.21 -1.68 16 7 C -0.09 -0.57 10.10 22.41 0.23 -0.34 16 8 C 0.05 0.57 11.17 84.89 0.95 1.52 16 9 N -0.44 -8.28 9.54 -184.62 -1.76 -10.04 16 10 C 0.00 0.08 6.76 41.93 0.28 0.36 16 11 C 0.56 16.84 7.80 86.78 0.68 17.51 16 12 O -0.56 -20.70 14.79 17.09 0.25 -20.45 16 13 N -0.70 -17.84 5.15 -440.34 -2.27 -20.11 16 14 C 0.15 4.12 3.21 46.06 0.15 4.27 16 15 H 0.07 2.45 7.55 -2.39 -0.02 2.43 16 16 C -0.12 -3.50 6.58 31.89 0.21 -3.29 16 17 C -0.11 -3.64 6.08 31.67 0.19 -3.45 16 18 C -0.09 -2.89 2.96 -10.07 -0.03 -2.92 16 19 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 20 C 0.16 6.97 5.31 86.38 0.46 7.42 16 21 N -0.76 -40.29 5.45 -343.47 -1.87 -42.16 16 22 C -0.34 -20.00 9.99 84.03 0.84 -19.16 16 23 H 0.06 3.71 7.83 -2.91 -0.02 3.68 16 24 C -0.11 -6.39 5.50 84.86 0.47 -5.92 16 25 N -0.97 -62.85 13.70 21.65 0.30 -62.56 16 26 Si 1.13 53.75 29.92 68.60 2.05 55.80 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 30 C -0.11 -2.85 6.19 31.32 0.19 -2.65 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 36 H 0.08 0.74 7.69 -2.39 -0.02 0.73 16 37 H 0.08 0.74 7.71 -2.38 -0.02 0.72 16 38 H 0.18 0.74 6.46 -2.91 -0.02 0.72 16 39 H 0.19 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.20 0.67 8.06 -2.91 -0.02 0.64 16 41 H 0.42 8.90 7.69 -92.71 -0.71 8.19 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.92 7.76 -2.39 -0.02 1.90 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.01 0.60 8.00 -2.39 -0.02 0.58 16 48 H 0.36 19.79 6.38 -92.71 -0.59 19.19 16 49 H 0.24 15.67 6.77 -92.71 -0.63 15.04 16 50 H 0.09 2.05 7.73 -2.39 -0.02 2.03 16 51 H 0.08 2.02 7.67 -2.38 -0.02 2.00 16 Total: -1.00 -82.60 413.33 2.14 -80.46 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.22 Total: 33.55 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 6.22 Total: -6.69 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -5.60 Total: -134.86 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.31 Total: -28.26 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 2.05 Total: 55.80 kcal Total: -82.60 2.14 -80.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507410384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.818 kcal (2) G-P(sol) polarization free energy of solvation -82.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds