Wall clock time and date at job start Wed Apr 1 2020 04:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.47021 * 2 1 4 4 O 1.42900 * 109.46726 * 119.99662 * 2 1 3 5 5 C 1.35646 * 117.00007 * 83.64521 * 4 2 1 6 6 C 1.39353 * 120.53700 * 359.14442 * 5 4 2 7 7 C 1.38297 * 118.43528 * 180.28445 * 6 5 4 8 8 C 1.38770 * 119.45091 * 359.46081 * 7 6 5 9 9 N 1.31374 * 121.06023 * 0.27609 * 8 7 6 10 10 C 1.32862 * 121.70003 * 359.97438 * 9 8 7 11 11 C 1.47828 * 119.78285 * 180.02562 * 10 9 8 12 12 O 1.21563 * 119.99811 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00268 * 0.02562 * 11 10 9 14 14 C 1.46502 * 120.00018 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47063 * 174.98599 * 14 13 11 16 16 N 1.46498 * 110.01996 * 54.00229 * 15 14 13 17 17 C 1.36937 * 119.99965 * 64.32227 * 16 15 14 18 18 H 1.08000 * 119.99801 * 354.88691 * 17 16 15 19 19 C 1.38814 * 119.99964 * 174.88343 * 17 16 15 20 20 N 1.31621 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99920 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46921 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47065 * 119.99823 * 21 19 17 24 24 H 1.48494 * 109.47155 * 239.99843 * 21 19 17 25 25 C 1.54268 * 110.02792 * 292.56029 * 15 14 13 26 26 C 1.54886 * 104.19448 * 217.10543 * 25 15 14 27 27 C 1.54887 * 102.74956 * 37.94347 * 26 25 15 28 28 C 1.53877 * 110.03124 * 175.39589 * 15 14 13 29 29 H 1.08997 * 109.46887 * 300.00477 * 1 2 3 30 30 H 1.09000 * 109.46806 * 59.99706 * 1 2 3 31 31 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47047 * 240.00124 * 2 1 3 33 33 H 1.08997 * 109.46921 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46923 * 299.99531 * 3 2 1 35 35 H 1.09003 * 109.46985 * 60.00006 * 3 2 1 36 36 H 1.08002 * 120.78215 * 0.02562 * 6 5 4 37 37 H 1.08006 * 120.27618 * 179.73724 * 7 6 5 38 38 H 1.07990 * 119.47347 * 180.25856 * 8 7 6 39 39 H 0.96993 * 120.00055 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.46703 * 294.97627 * 14 13 11 41 41 H 1.08996 * 109.47576 * 54.98326 * 14 13 11 42 42 H 0.97004 * 119.99930 * 244.32539 * 16 15 14 43 43 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.48931 * 335.78319 * 25 15 14 45 45 H 1.09003 * 110.48366 * 98.43213 * 25 15 14 46 46 H 1.09008 * 110.75881 * 279.62905 * 26 25 15 47 47 H 1.09000 * 110.75909 * 156.25665 * 26 25 15 48 48 H 1.09001 * 110.49036 * 203.37868 * 27 26 25 49 49 H 1.08998 * 110.48772 * 80.73629 * 27 26 25 50 50 H 1.09003 * 110.03153 * 238.56568 * 28 15 14 51 51 H 1.08998 * 110.02887 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0854 -2.0264 1.1078 6 6 1.6967 -2.7088 -0.0434 7 6 1.7898 -4.0886 -0.0541 8 6 2.2738 -4.7485 1.0666 9 7 2.6396 -4.0840 2.1392 10 6 2.5640 -2.7589 2.1991 11 6 2.9878 -2.0540 3.4275 12 8 2.9207 -0.8416 3.4864 13 7 3.4496 -2.7553 4.4816 14 6 3.8691 -2.0567 5.6991 15 6 4.2289 -3.0815 6.7768 16 7 5.2225 -4.0255 6.2595 17 6 6.4706 -3.5832 5.9108 18 1 6.6967 -2.5275 5.9385 19 6 7.4454 -4.4918 5.5216 20 7 7.1697 -5.7783 5.4874 21 14 9.1482 -3.8884 5.0466 22 1 9.2013 -2.4095 5.1689 23 1 10.1584 -4.4958 5.9498 24 1 9.4389 -4.2804 3.6441 25 6 2.9634 -3.8393 7.2287 26 6 3.1652 -4.0417 8.7510 27 6 3.8311 -2.7130 9.1872 28 6 4.7805 -2.3652 8.0220 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.3274 -2.1731 -0.9054 37 1 1.4926 -4.6477 -0.9291 38 1 2.3506 -5.8256 1.0571 39 1 3.5035 -3.7226 4.4345 40 1 4.7396 -1.4379 5.4813 41 1 3.0546 -1.4259 6.0551 42 1 4.9962 -4.9640 6.1640 43 1 7.8509 -6.4132 5.2159 44 1 2.0722 -3.2415 7.0382 45 1 2.8939 -4.8019 6.7219 46 1 3.8263 -4.8866 8.9442 47 1 2.2072 -4.1766 9.2532 48 1 4.3946 -2.8534 10.1095 49 1 3.0800 -1.9331 9.3129 50 1 5.7872 -2.7207 8.2419 51 1 4.7923 -1.2877 7.8583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568246118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:34 Heat of formation + Delta-G solvation = -33.154734 kcal Electronic energy + Delta-G solvation = -31657.741198 eV Core-core repulsion = 27557.456720 eV Total energy + Delta-G solvation = -4100.284477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93576 -39.09610 -38.49574 -37.77047 -34.00537 -33.46065 -33.17250 -32.37316 -30.61288 -30.17727 -28.21002 -27.76109 -27.53386 -25.09542 -24.19689 -23.48059 -22.85717 -21.33699 -20.46423 -19.90173 -18.77773 -18.29914 -17.41955 -17.00643 -16.78638 -15.79439 -15.58882 -15.21449 -14.95753 -14.79340 -14.56559 -14.33542 -14.28844 -13.97977 -13.56676 -13.40715 -13.14961 -13.05746 -12.78923 -12.62658 -12.48559 -12.47397 -12.34266 -12.09627 -11.77377 -11.45894 -11.22279 -10.97265 -10.94131 -10.77277 -10.60430 -10.49705 -10.41390 -10.25864 -9.99807 -9.92179 -9.85696 -9.73852 -9.57503 -9.28105 -8.85075 -8.50929 -8.18329 -6.93025 -5.72889 -3.01379 0.72802 1.19723 2.96611 3.12208 3.45969 3.53202 3.54284 3.66735 4.05804 4.38436 4.41586 4.55667 4.62107 4.65593 4.69469 4.83001 4.96628 5.08000 5.19331 5.23300 5.26784 5.33084 5.39268 5.42913 5.54888 5.58898 5.65194 5.77114 5.81292 5.84324 5.86387 5.90585 5.97644 6.05423 6.08217 6.18369 6.24717 6.33758 6.36039 6.41985 6.51981 6.66331 6.72729 6.82474 6.93363 7.12017 7.20729 7.25335 7.79551 7.80281 8.29995 8.45761 8.85117 9.57478 10.12461 10.48071 11.49282 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.003399 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.741855 B = 8235.368888 C = 9133.653275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.067 3.933 3 C -0.146 4.146 4 O -0.264 6.264 5 C 0.137 3.863 6 C -0.183 4.183 7 C -0.113 4.113 8 C 0.058 3.942 9 N -0.411 5.411 10 C 0.052 3.948 11 C 0.563 3.437 12 O -0.534 6.534 13 N -0.682 5.682 14 C 0.117 3.883 15 C 0.189 3.811 16 N -0.711 5.711 17 C -0.230 4.230 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.129 4.129 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.413 0.587 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.384 0.616 43 H 0.253 0.747 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.083 0.917 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.890 6.389 -9.959 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.011 3.989 3 C -0.203 4.203 4 O -0.174 6.174 5 C 0.086 3.914 6 C -0.209 4.209 7 C -0.133 4.133 8 C -0.103 4.103 9 N -0.122 5.122 10 C -0.088 4.088 11 C 0.346 3.654 12 O -0.411 6.411 13 N -0.332 5.332 14 C -0.009 4.009 15 C 0.097 3.903 16 N -0.352 5.352 17 C -0.361 4.361 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.731 3.269 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.160 4.160 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.169 4.169 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.219 0.781 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.102 0.898 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.379 7.079 -9.000 19.174 hybrid contribution 0.681 -0.222 -1.544 1.702 sum -14.698 6.856 -10.544 19.345 Atomic orbital electron populations 1.22382 0.94990 1.02915 1.03373 1.22576 0.94412 0.94385 0.87536 1.21808 1.02456 0.93089 1.02977 1.86501 1.78866 1.14285 1.37733 1.20025 0.93337 0.84399 0.93635 1.21725 1.05516 0.95570 0.98086 1.22171 0.97363 0.94034 0.99775 1.22734 0.98036 1.00797 0.88741 1.67710 1.10894 1.06395 1.27216 1.20908 1.03936 0.89184 0.94723 1.17584 0.78798 0.86561 0.82431 1.90782 1.55754 1.12740 1.81848 1.45627 1.62113 1.11868 1.13574 1.22006 0.98508 0.95410 0.84997 1.20442 0.89189 0.89895 0.90782 1.42543 1.10067 1.06705 1.75933 1.19137 0.87955 0.92341 1.36671 0.91243 1.24678 0.97909 0.95261 1.02632 1.69666 1.33433 1.00254 1.54409 0.86228 0.85169 0.77815 0.77696 1.20604 1.21994 1.22080 1.22574 0.97194 1.00357 0.95911 1.22413 0.99489 0.98095 0.95630 1.22305 0.98288 0.96953 0.98243 1.22640 1.00580 0.99174 0.94500 0.91070 0.90969 0.92103 0.91141 0.91429 0.90692 0.91065 0.83857 0.84240 0.81864 0.74949 0.91978 0.92661 0.78083 0.93717 0.91894 0.91477 0.91258 0.92691 0.92495 0.92637 0.89839 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.21 37.16 0.34 -1.14 16 2 C 0.07 0.69 2.86 -26.72 -0.08 0.61 16 3 C -0.15 -1.34 9.56 37.16 0.36 -0.99 16 4 O -0.26 -4.01 7.87 -40.59 -0.32 -4.33 16 5 C 0.14 2.06 6.59 -38.55 -0.25 1.81 16 6 C -0.18 -2.03 8.35 -39.15 -0.33 -2.36 16 7 C -0.11 -1.14 10.10 -39.36 -0.40 -1.54 16 8 C 0.06 0.72 11.18 -17.55 -0.20 0.52 16 9 N -0.41 -6.77 9.54 -9.71 -0.09 -6.87 16 10 C 0.05 0.92 6.76 -82.89 -0.56 0.36 16 11 C 0.56 11.38 7.80 -12.34 -0.10 11.28 16 12 O -0.53 -11.83 15.13 -16.64 -0.25 -12.09 16 13 N -0.68 -13.57 5.23 -61.25 -0.32 -13.89 16 14 C 0.12 2.31 4.08 -4.04 -0.02 2.29 16 15 C 0.19 3.64 0.69 -130.70 -0.09 3.55 16 16 N -0.71 -16.70 4.47 -46.19 -0.21 -16.91 16 17 C -0.23 -6.13 8.43 -15.06 -0.13 -6.25 16 18 H 0.07 1.87 7.44 -52.49 -0.39 1.48 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 21 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 C -0.12 -2.03 5.79 -25.07 -0.15 -2.17 16 26 C -0.12 -1.81 6.91 -24.74 -0.17 -1.98 16 27 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 28 C -0.13 -2.34 5.89 -25.61 -0.15 -2.50 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 32 H 0.07 0.60 6.20 -51.94 -0.32 0.28 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.14 1.16 5.72 -52.49 -0.30 0.86 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.41 8.39 7.31 -40.82 -0.30 8.09 16 40 H 0.06 1.36 7.67 -51.93 -0.40 0.97 16 41 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 42 H 0.38 9.68 7.44 -40.82 -0.30 9.38 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.06 0.97 7.77 -51.93 -0.40 0.57 16 45 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 46 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 1.74 7.26 -51.93 -0.38 1.36 16 51 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -32.63 407.71 -9.68 -42.31 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -8.16 Total: 15.48 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.18 Total: -0.84 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: 0.11 Total: -64.28 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.57 Total: -16.42 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.63 -9.68 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568246118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.159 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds