Wall clock time and date at job start Wed Apr 1 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.47021 * 2 1 4 4 O 1.42900 * 109.46726 * 119.99662 * 2 1 3 5 5 C 1.35646 * 117.00007 * 83.64521 * 4 2 1 6 6 C 1.39353 * 120.53700 * 359.14442 * 5 4 2 7 7 C 1.38297 * 118.43528 * 180.28445 * 6 5 4 8 8 C 1.38770 * 119.45091 * 359.46081 * 7 6 5 9 9 N 1.31374 * 121.06023 * 0.27609 * 8 7 6 10 10 C 1.32862 * 121.70003 * 359.97438 * 9 8 7 11 11 C 1.47828 * 119.78285 * 180.02562 * 10 9 8 12 12 O 1.21563 * 119.99811 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00268 * 0.02562 * 11 10 9 14 14 C 1.46502 * 120.00018 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47063 * 174.98599 * 14 13 11 16 16 N 1.46498 * 110.01996 * 54.00229 * 15 14 13 17 17 C 1.36937 * 119.99965 * 64.32227 * 16 15 14 18 18 H 1.08000 * 119.99801 * 354.88691 * 17 16 15 19 19 C 1.38814 * 119.99964 * 174.88343 * 17 16 15 20 20 N 1.31621 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99920 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46921 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47065 * 119.99823 * 21 19 17 24 24 H 1.48494 * 109.47155 * 239.99843 * 21 19 17 25 25 C 1.54268 * 110.02792 * 292.56029 * 15 14 13 26 26 C 1.54886 * 104.19448 * 217.10543 * 25 15 14 27 27 C 1.54887 * 102.74956 * 37.94347 * 26 25 15 28 28 C 1.53877 * 110.03124 * 175.39589 * 15 14 13 29 29 H 1.08997 * 109.46887 * 300.00477 * 1 2 3 30 30 H 1.09000 * 109.46806 * 59.99706 * 1 2 3 31 31 H 1.08996 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47047 * 240.00124 * 2 1 3 33 33 H 1.08997 * 109.46921 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46923 * 299.99531 * 3 2 1 35 35 H 1.09003 * 109.46985 * 60.00006 * 3 2 1 36 36 H 1.08002 * 120.78215 * 0.02562 * 6 5 4 37 37 H 1.08006 * 120.27618 * 179.73724 * 7 6 5 38 38 H 1.07990 * 119.47347 * 180.25856 * 8 7 6 39 39 H 0.96993 * 120.00055 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.46703 * 294.97627 * 14 13 11 41 41 H 1.08996 * 109.47576 * 54.98326 * 14 13 11 42 42 H 0.97004 * 119.99930 * 244.32539 * 16 15 14 43 43 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.48931 * 335.78319 * 25 15 14 45 45 H 1.09003 * 110.48366 * 98.43213 * 25 15 14 46 46 H 1.09008 * 110.75881 * 279.62905 * 26 25 15 47 47 H 1.09000 * 110.75909 * 156.25665 * 26 25 15 48 48 H 1.09001 * 110.49036 * 203.37868 * 27 26 25 49 49 H 1.08998 * 110.48772 * 80.73629 * 27 26 25 50 50 H 1.09003 * 110.03153 * 238.56568 * 28 15 14 51 51 H 1.08998 * 110.02887 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0854 -2.0264 1.1078 6 6 1.6967 -2.7088 -0.0434 7 6 1.7898 -4.0886 -0.0541 8 6 2.2738 -4.7485 1.0666 9 7 2.6396 -4.0840 2.1392 10 6 2.5640 -2.7589 2.1991 11 6 2.9878 -2.0540 3.4275 12 8 2.9207 -0.8416 3.4864 13 7 3.4496 -2.7553 4.4816 14 6 3.8691 -2.0567 5.6991 15 6 4.2289 -3.0815 6.7768 16 7 5.2225 -4.0255 6.2595 17 6 6.4706 -3.5832 5.9108 18 1 6.6967 -2.5275 5.9385 19 6 7.4454 -4.4918 5.5216 20 7 7.1697 -5.7783 5.4874 21 14 9.1482 -3.8884 5.0466 22 1 9.2013 -2.4095 5.1689 23 1 10.1584 -4.4958 5.9498 24 1 9.4389 -4.2804 3.6441 25 6 2.9634 -3.8393 7.2287 26 6 3.1652 -4.0417 8.7510 27 6 3.8311 -2.7130 9.1872 28 6 4.7805 -2.3652 8.0220 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.3274 -2.1731 -0.9054 37 1 1.4926 -4.6477 -0.9291 38 1 2.3506 -5.8256 1.0571 39 1 3.5035 -3.7226 4.4345 40 1 4.7396 -1.4379 5.4813 41 1 3.0546 -1.4259 6.0551 42 1 4.9962 -4.9640 6.1640 43 1 7.8509 -6.4132 5.2159 44 1 2.0722 -3.2415 7.0382 45 1 2.8939 -4.8019 6.7219 46 1 3.8263 -4.8866 8.9442 47 1 2.2072 -4.1766 9.2532 48 1 4.3946 -2.8534 10.1095 49 1 3.0800 -1.9331 9.3129 50 1 5.7872 -2.7207 8.2419 51 1 4.7923 -1.2877 7.8583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568246118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:33 Heat of formation + Delta-G solvation = -54.028353 kcal Electronic energy + Delta-G solvation = -31658.646346 eV Core-core repulsion = 27557.456720 eV Total energy + Delta-G solvation = -4101.189625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.00224 -40.54687 -39.58577 -39.21437 -35.55566 -35.09639 -34.25473 -33.42425 -32.35256 -31.33734 -29.62538 -29.40053 -28.23270 -26.51617 -25.52972 -24.97858 -24.18211 -22.26454 -21.76442 -21.24034 -20.27402 -19.44015 -18.98327 -18.60436 -17.98732 -17.16522 -16.80477 -16.47473 -16.37612 -16.05511 -15.86401 -15.69514 -15.44651 -15.28395 -15.08315 -14.74844 -14.67146 -14.17148 -14.02313 -13.90412 -13.45979 -13.40956 -13.29177 -13.24753 -13.14821 -12.90078 -12.83955 -12.64011 -12.25210 -12.07089 -12.01538 -11.84812 -11.78969 -11.74749 -11.55025 -11.43979 -11.32142 -11.19475 -10.91501 -10.80183 -10.51724 -9.93972 -9.43774 -8.95326 -7.89813 -5.15758 -0.32710 0.24162 1.42374 1.44379 1.52264 1.81615 2.06799 2.29391 2.56750 2.86507 3.29089 3.40844 3.57699 3.73269 3.75119 3.77968 3.85667 3.94051 3.95559 4.04888 4.13414 4.14305 4.18897 4.42596 4.50838 4.56113 4.66103 4.68232 4.72710 4.75997 4.78483 4.83422 4.84657 4.91385 4.97640 4.98340 5.02138 5.12957 5.20110 5.20568 5.23936 5.27121 5.40965 5.45597 5.46608 5.57384 5.64459 5.71404 6.29747 6.33661 6.58891 6.90053 7.30830 7.40268 8.13823 8.38998 9.33006 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.003399 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.741855 B = 8235.368888 C = 9133.653275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.055 3.945 3 C -0.146 4.146 4 O -0.298 6.298 5 C 0.130 3.870 6 C -0.174 4.174 7 C -0.085 4.085 8 C 0.047 3.953 9 N -0.444 5.444 10 C 0.001 3.999 11 C 0.555 3.445 12 O -0.566 6.566 13 N -0.685 5.685 14 C 0.125 3.875 15 C 0.185 3.815 16 N -0.714 5.714 17 C -0.215 4.215 18 H 0.062 0.938 19 C -0.065 4.065 20 N -0.960 5.960 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.299 1.299 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.112 4.112 28 C -0.129 4.129 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.189 0.811 39 H 0.410 0.590 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.375 0.625 43 H 0.248 0.752 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.052 0.948 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.135 6.403 -11.936 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 C -0.203 4.203 4 O -0.209 6.209 5 C 0.079 3.921 6 C -0.200 4.200 7 C -0.105 4.105 8 C -0.115 4.115 9 N -0.156 5.156 10 C -0.135 4.135 11 C 0.342 3.658 12 O -0.446 6.446 13 N -0.334 5.334 14 C -0.002 4.002 15 C 0.094 3.906 16 N -0.354 5.354 17 C -0.347 4.347 18 H 0.080 0.920 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.219 1.219 24 H -0.227 1.227 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.149 4.149 28 C -0.169 4.169 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.198 0.802 37 H 0.209 0.791 38 H 0.206 0.794 39 H 0.247 0.753 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.208 0.792 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.642 7.146 -10.949 21.959 hybrid contribution 1.276 -0.183 -1.060 1.668 sum -16.367 6.963 -12.008 21.460 Atomic orbital electron populations 1.22352 0.93340 1.03263 1.04052 1.22978 0.95773 0.94404 0.86846 1.21863 1.01478 0.93047 1.03883 1.86467 1.79264 1.14731 1.40480 1.20180 0.93119 0.84623 0.94170 1.22160 1.04174 0.96166 0.97542 1.22711 0.93905 0.93735 1.00109 1.23366 0.97471 1.02060 0.88631 1.67581 1.12252 1.06182 1.29571 1.20511 1.08108 0.90096 0.94787 1.18159 0.77917 0.86468 0.83300 1.90730 1.57202 1.14008 1.82687 1.45645 1.62367 1.11574 1.13816 1.21891 0.97618 0.95301 0.85355 1.20698 0.89609 0.89474 0.90797 1.42602 1.09920 1.06846 1.76074 1.19280 0.89048 0.91835 1.34564 0.91978 1.25258 1.00787 0.95564 1.04150 1.69782 1.33979 1.00941 1.56370 0.85388 0.82005 0.77460 0.76869 1.20142 1.21905 1.22656 1.22525 0.96093 0.99744 0.97000 1.22393 1.00731 0.97457 0.94479 1.22287 0.98092 0.97538 0.97019 1.22574 0.99759 0.99262 0.95292 0.92781 0.87864 0.91883 0.88896 0.93003 0.87198 0.92687 0.80197 0.79137 0.79374 0.75308 0.95113 0.91451 0.79181 0.94300 0.90266 0.92215 0.92938 0.89520 0.91468 0.90192 0.92909 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.21 71.98 0.66 -1.81 16 2 C 0.06 1.05 2.86 30.60 0.09 1.13 16 3 C -0.15 -2.56 9.56 71.98 0.69 -1.87 16 4 O -0.30 -9.18 7.87 -68.61 -0.54 -9.72 16 5 C 0.13 3.88 6.59 22.94 0.15 4.03 16 6 C -0.17 -3.32 8.35 22.55 0.19 -3.13 16 7 C -0.09 -1.36 10.10 22.41 0.23 -1.14 16 8 C 0.05 1.08 11.18 84.89 0.95 2.03 16 9 N -0.44 -14.82 9.54 -184.64 -1.76 -16.58 16 10 C 0.00 0.05 6.76 41.92 0.28 0.33 16 11 C 0.56 23.79 7.80 86.78 0.68 24.47 16 12 O -0.57 -26.67 15.13 17.07 0.26 -26.41 16 13 N -0.68 -28.75 5.23 -465.97 -2.44 -31.19 16 14 C 0.12 5.14 4.08 86.38 0.35 5.49 16 15 C 0.18 7.28 0.69 4.33 0.00 7.28 16 16 N -0.71 -34.84 4.47 -300.06 -1.34 -36.18 16 17 C -0.22 -11.88 8.43 84.03 0.71 -11.17 16 18 H 0.06 3.48 7.44 -2.91 -0.02 3.46 16 19 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 20 N -0.96 -58.13 13.06 21.65 0.28 -57.85 16 21 Si 0.95 47.81 29.55 68.60 2.03 49.84 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 25 C -0.12 -3.78 5.79 31.67 0.18 -3.60 16 26 C -0.11 -3.26 6.91 31.88 0.22 -3.04 16 27 C -0.11 -3.19 6.83 31.67 0.22 -2.97 16 28 C -0.13 -4.73 5.89 31.32 0.18 -4.55 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.87 7.11 -2.39 -0.02 0.85 16 32 H 0.09 1.29 6.20 -2.39 -0.01 1.28 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.18 2.01 5.72 -2.91 -0.02 1.99 16 37 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.19 3.18 8.06 -2.92 -0.02 3.16 16 39 H 0.41 17.60 7.31 -92.71 -0.68 16.92 16 40 H 0.03 1.43 7.67 -2.38 -0.02 1.42 16 41 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16 42 H 0.38 19.65 7.44 -92.71 -0.69 18.96 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.08 2.34 7.77 -2.39 -0.02 2.33 16 45 H 0.06 2.05 7.70 -2.39 -0.02 2.03 16 46 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 50 H 0.05 2.25 7.26 -2.39 -0.02 2.24 16 51 H 0.06 2.01 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -76.71 407.71 2.32 -74.39 By element: Atomic # 1 Polarization: 45.91 SS G_CDS: -0.42 Total: 45.49 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.25 Total: 8.21 kcal Atomic # 7 Polarization: -136.54 SS G_CDS: -5.26 Total: -141.80 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.28 Total: -36.13 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -76.71 2.32 -74.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568246118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.359 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds