Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 O 1.42906 * 109.47295 * 180.02562 * 3 2 1 5 5 C 1.35643 * 117.00243 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.54110 * 359.97438 * 5 4 3 7 7 C 1.38302 * 118.44307 * 180.02562 * 6 5 4 8 8 C 1.38765 * 119.44284 * 0.02562 * 7 6 5 9 9 N 1.31375 * 121.06786 * 359.72852 * 8 7 6 10 10 C 1.32863 * 121.69257 * 0.54396 * 9 8 7 11 11 C 1.47835 * 119.78132 * 179.74487 * 10 9 8 12 12 O 1.21553 * 120.00092 * 179.72229 * 11 10 9 13 13 N 1.34784 * 119.99998 * 359.71967 * 11 10 9 14 14 C 1.47425 * 125.64653 * 0.04340 * 13 11 10 15 15 C 1.54907 * 104.83095 * 204.09108 * 14 13 11 16 16 H 1.09002 * 111.00536 * 204.92020 * 15 14 13 17 17 C 1.52997 * 111.00532 * 81.06543 * 15 14 13 18 18 C 1.55161 * 101.57934 * 322.99197 * 15 14 13 19 19 H 1.08998 * 110.87473 * 277.06526 * 18 15 14 20 20 C 1.53004 * 110.72010 * 153.86469 * 18 15 14 21 21 N 1.46499 * 109.47198 * 180.02562 * 20 18 15 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 C 1.47013 * 125.64771 * 180.02562 * 13 11 10 31 31 H 1.08998 * 109.47283 * 299.99930 * 1 2 3 32 32 H 1.08993 * 109.47572 * 59.99955 * 1 2 3 33 33 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47283 * 240.00070 * 2 1 3 35 35 H 1.09004 * 109.47547 * 119.99625 * 2 1 3 36 36 H 1.09001 * 109.47346 * 60.00398 * 3 2 1 37 37 H 1.08999 * 109.47118 * 299.99974 * 3 2 1 38 38 H 1.08007 * 120.77628 * 0.03870 * 6 5 4 39 39 H 1.08002 * 120.28175 * 179.97438 * 7 6 5 40 40 H 1.07998 * 119.46778 * 180.02562 * 8 7 6 41 41 H 1.08998 * 110.37003 * 322.93108 * 14 13 11 42 42 H 1.09005 * 110.36704 * 85.14486 * 14 13 11 43 43 H 1.09004 * 109.47045 * 307.80694 * 17 15 14 44 44 H 1.08997 * 109.47327 * 67.80513 * 17 15 14 45 45 H 1.08998 * 109.47181 * 187.81040 * 17 15 14 46 46 H 1.09009 * 109.46730 * 60.02126 * 20 18 15 47 47 H 1.08998 * 109.46846 * 300.02670 * 20 18 15 48 48 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 49 49 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.88176 * 59.55950 * 30 13 11 51 51 H 1.09007 * 110.01363 * 298.46776 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0848 2.6512 -0.0012 6 6 3.3369 3.8269 -0.0018 7 6 4.0094 5.0354 -0.0030 8 6 5.3971 5.0438 -0.0041 9 7 6.0818 3.9226 0.0013 10 6 5.4809 2.7377 -0.0027 11 6 6.2931 1.5024 -0.0021 12 8 5.7474 0.4163 -0.0007 13 7 7.6387 1.5807 -0.0031 14 6 8.4269 2.8265 -0.0040 15 6 9.7936 2.4306 -0.6162 16 1 10.5814 3.1064 -0.2833 17 6 9.7190 2.3891 -2.1438 18 6 9.9969 1.0082 -0.0305 19 1 10.4117 1.0584 0.9762 20 6 10.8953 0.1705 -0.9427 21 7 11.0682 -1.1648 -0.3653 22 6 11.8427 -2.0935 -1.0078 23 1 12.3224 -1.8431 -1.9424 24 6 12.0113 -3.3568 -0.4577 25 7 12.7553 -4.2496 -1.0754 26 14 11.1812 -3.7900 1.1587 27 1 9.8367 -4.3594 0.8877 28 1 12.0046 -4.7894 1.8857 29 1 11.0424 -2.5658 1.9876 30 6 8.5633 0.4377 -0.0032 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 2.2573 3.7952 -0.0011 39 1 3.4593 5.9648 -0.0038 40 1 5.9226 5.9873 -0.0046 41 1 7.9402 3.5829 -0.6198 42 1 8.5574 3.1936 1.0140 43 1 8.8814 1.7622 -2.4497 44 1 9.5762 3.3990 -2.5282 45 1 10.6460 1.9764 -2.5418 46 1 11.8676 0.6538 -1.0384 47 1 10.4342 0.0839 -1.9266 48 1 10.6377 -1.3895 0.4744 49 1 12.8728 -5.1325 -0.6913 50 1 8.3921 -0.1776 -0.8865 51 1 8.4191 -0.1589 0.8976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569846950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = -15.014538 kcal Electronic energy + Delta-G solvation = -31005.982635 eV Core-core repulsion = 26906.484776 eV Total energy + Delta-G solvation = -4099.497859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26993 -39.77120 -38.64628 -37.73552 -34.77493 -34.34607 -33.06433 -32.31340 -31.24631 -30.87293 -29.22589 -27.13692 -26.70942 -25.91286 -24.57871 -23.35155 -22.73200 -21.84656 -21.31837 -20.05955 -19.23690 -18.42878 -17.79216 -17.33200 -16.96825 -16.76831 -16.09926 -15.71944 -15.23380 -14.98026 -14.77596 -14.69223 -14.21094 -14.14769 -13.94650 -13.59572 -13.41383 -13.25844 -13.05040 -12.71846 -12.53486 -12.51612 -12.40687 -12.35175 -12.07820 -11.98915 -11.76995 -11.58970 -11.39492 -11.20620 -11.06571 -10.83286 -10.56595 -10.45488 -10.30944 -10.21549 -10.04758 -9.92865 -9.54662 -9.51747 -8.83717 -8.82018 -8.34751 -7.16088 -5.70438 -3.05541 0.36046 0.84168 2.67256 2.71741 3.01121 3.44748 3.48665 3.52482 3.62601 3.93181 4.15995 4.26555 4.45286 4.46959 4.55139 4.65330 4.66990 4.70860 4.76177 4.83047 4.96368 4.96675 5.04928 5.11460 5.22261 5.37492 5.47524 5.54496 5.55399 5.59533 5.61654 5.62943 5.68617 5.76932 5.80239 5.85840 5.89600 6.01822 6.02790 6.10155 6.23727 6.30345 6.31861 6.48542 6.53802 6.68908 6.83819 6.88576 7.39759 7.67098 8.05684 8.29433 8.48617 9.27875 10.00576 10.20172 11.48072 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002830 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.963862 B = 9892.598488 C =11930.932251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.270 6.270 5 C 0.140 3.860 6 C -0.177 4.177 7 C -0.109 4.109 8 C 0.052 3.948 9 N -0.414 5.414 10 C 0.051 3.949 11 C 0.579 3.421 12 O -0.516 6.516 13 N -0.598 5.598 14 C 0.108 3.892 15 C -0.101 4.101 16 H 0.090 0.910 17 C -0.142 4.142 18 C -0.106 4.106 19 H 0.084 0.916 20 C 0.167 3.833 21 N -0.757 5.757 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.115 3.885 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.035 0.965 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.078 0.922 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.014 23.913 2.738 34.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.089 3.911 6 C -0.204 4.204 7 C -0.129 4.129 8 C -0.108 4.108 9 N -0.125 5.125 10 C -0.087 4.087 11 C 0.365 3.635 12 O -0.391 6.391 13 N -0.331 5.331 14 C -0.014 4.014 15 C -0.121 4.121 16 H 0.108 0.892 17 C -0.199 4.199 18 C -0.126 4.126 19 H 0.102 0.898 20 C 0.040 3.960 21 N -0.403 5.403 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.583 5.583 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.203 1.203 30 C -0.007 4.007 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.182 0.818 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.268 22.946 2.571 32.780 hybrid contribution -1.646 -0.147 1.264 2.081 sum -24.914 22.798 3.835 33.988 Atomic orbital electron populations 1.21690 0.94228 1.02713 1.01936 1.21468 0.95719 0.94404 1.04557 1.23050 0.78530 0.99706 1.01175 1.86434 1.20885 1.24554 1.86072 1.19996 0.92205 0.85771 0.93096 1.21751 1.01050 0.91835 1.05748 1.22194 0.95829 0.98334 0.96522 1.22784 0.91408 0.96620 0.99976 1.67931 1.38886 0.97386 1.08347 1.20687 0.88461 0.92877 1.06719 1.17230 0.80729 0.87288 0.78249 1.90862 1.70811 1.27630 1.49805 1.48272 1.04263 1.09162 1.71381 1.22697 0.90447 0.87104 1.01187 1.22401 0.96812 0.96466 0.96377 0.89221 1.21768 1.02753 1.01222 0.94179 1.22541 0.94273 0.94857 1.00890 0.89809 1.20708 0.95650 0.85082 0.94543 1.42753 1.60797 1.10541 1.26187 1.19047 1.21790 0.91535 1.04795 0.89210 1.24657 0.99833 0.96245 0.98406 1.69699 1.43158 1.05519 1.39973 0.86572 0.79434 0.77836 0.84882 1.20939 1.21781 1.20336 1.22058 0.87645 0.88184 1.02789 0.92497 0.92456 0.91544 0.90363 0.90428 0.91955 0.91919 0.83762 0.84039 0.81761 0.87929 0.91812 0.92599 0.92965 0.91434 0.95080 0.94751 0.80707 0.93119 0.90403 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.05 0.42 4.76 37.16 0.18 0.60 16 4 O -0.27 -3.51 8.20 -40.58 -0.33 -3.84 16 5 C 0.14 1.68 6.71 -38.56 -0.26 1.42 16 6 C -0.18 -1.40 9.13 -39.15 -0.36 -1.76 16 7 C -0.11 -0.68 10.10 -39.36 -0.40 -1.08 16 8 C 0.05 0.40 11.17 -17.55 -0.20 0.20 16 9 N -0.41 -4.60 6.59 -9.71 -0.06 -4.67 16 10 C 0.05 0.70 6.73 -82.88 -0.56 0.14 16 11 C 0.58 9.79 7.83 -12.33 -0.10 9.69 16 12 O -0.52 -10.43 15.47 -16.63 -0.26 -10.69 16 13 N -0.60 -9.35 3.31 -171.64 -0.57 -9.92 16 14 C 0.11 1.35 5.39 -2.53 -0.01 1.33 16 15 C -0.10 -1.25 3.54 -88.47 -0.31 -1.57 16 16 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.14 -1.76 8.13 37.16 0.30 -1.46 16 18 C -0.11 -1.67 2.88 -88.78 -0.26 -1.93 16 19 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.17 3.25 4.52 -4.04 -0.02 3.23 16 21 N -0.76 -18.46 5.25 -59.90 -0.31 -18.77 16 22 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 23 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 24 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 25 N -0.94 -30.10 13.97 55.49 0.78 -29.33 16 26 Si 0.88 23.00 27.74 -169.99 -4.71 18.29 16 27 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 30 C 0.12 1.99 5.83 -3.07 -0.02 1.97 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 37 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 38 H 0.14 0.74 6.46 -52.48 -0.34 0.40 16 39 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.10 1.19 5.80 -51.93 -0.30 0.89 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.79 7.91 -51.93 -0.41 0.38 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.87 6.76 -51.93 -0.35 0.52 16 46 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 48 H 0.36 8.68 5.38 -40.82 -0.22 8.46 16 49 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 50 H 0.08 1.50 7.76 -51.93 -0.40 1.10 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -36.46 404.36 -9.70 -46.16 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.26 Total: 4.66 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.06 Total: 2.01 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.17 Total: -62.69 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.59 Total: -14.53 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.46 -9.70 -46.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569846950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.145 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds