Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 O 1.42906 * 109.47295 * 180.02562 * 3 2 1 5 5 C 1.35643 * 117.00243 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.54110 * 359.97438 * 5 4 3 7 7 C 1.38302 * 118.44307 * 180.02562 * 6 5 4 8 8 C 1.38765 * 119.44284 * 0.02562 * 7 6 5 9 9 N 1.31375 * 121.06786 * 359.72852 * 8 7 6 10 10 C 1.32863 * 121.69257 * 0.54396 * 9 8 7 11 11 C 1.47835 * 119.78132 * 179.74487 * 10 9 8 12 12 O 1.21553 * 120.00092 * 179.72229 * 11 10 9 13 13 N 1.34784 * 119.99998 * 359.71967 * 11 10 9 14 14 C 1.47425 * 125.64653 * 0.04340 * 13 11 10 15 15 C 1.54907 * 104.83095 * 204.09108 * 14 13 11 16 16 H 1.09002 * 111.00536 * 204.92020 * 15 14 13 17 17 C 1.52997 * 111.00532 * 81.06543 * 15 14 13 18 18 C 1.55161 * 101.57934 * 322.99197 * 15 14 13 19 19 H 1.08998 * 110.87473 * 277.06526 * 18 15 14 20 20 C 1.53004 * 110.72010 * 153.86469 * 18 15 14 21 21 N 1.46499 * 109.47198 * 180.02562 * 20 18 15 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 C 1.47013 * 125.64771 * 180.02562 * 13 11 10 31 31 H 1.08998 * 109.47283 * 299.99930 * 1 2 3 32 32 H 1.08993 * 109.47572 * 59.99955 * 1 2 3 33 33 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47283 * 240.00070 * 2 1 3 35 35 H 1.09004 * 109.47547 * 119.99625 * 2 1 3 36 36 H 1.09001 * 109.47346 * 60.00398 * 3 2 1 37 37 H 1.08999 * 109.47118 * 299.99974 * 3 2 1 38 38 H 1.08007 * 120.77628 * 0.03870 * 6 5 4 39 39 H 1.08002 * 120.28175 * 179.97438 * 7 6 5 40 40 H 1.07998 * 119.46778 * 180.02562 * 8 7 6 41 41 H 1.08998 * 110.37003 * 322.93108 * 14 13 11 42 42 H 1.09005 * 110.36704 * 85.14486 * 14 13 11 43 43 H 1.09004 * 109.47045 * 307.80694 * 17 15 14 44 44 H 1.08997 * 109.47327 * 67.80513 * 17 15 14 45 45 H 1.08998 * 109.47181 * 187.81040 * 17 15 14 46 46 H 1.09009 * 109.46730 * 60.02126 * 20 18 15 47 47 H 1.08998 * 109.46846 * 300.02670 * 20 18 15 48 48 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 49 49 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.88176 * 59.55950 * 30 13 11 51 51 H 1.09007 * 110.01363 * 298.46776 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0848 2.6512 -0.0012 6 6 3.3369 3.8269 -0.0018 7 6 4.0094 5.0354 -0.0030 8 6 5.3971 5.0438 -0.0041 9 7 6.0818 3.9226 0.0013 10 6 5.4809 2.7377 -0.0027 11 6 6.2931 1.5024 -0.0021 12 8 5.7474 0.4163 -0.0007 13 7 7.6387 1.5807 -0.0031 14 6 8.4269 2.8265 -0.0040 15 6 9.7936 2.4306 -0.6162 16 1 10.5814 3.1064 -0.2833 17 6 9.7190 2.3891 -2.1438 18 6 9.9969 1.0082 -0.0305 19 1 10.4117 1.0584 0.9762 20 6 10.8953 0.1705 -0.9427 21 7 11.0682 -1.1648 -0.3653 22 6 11.8427 -2.0935 -1.0078 23 1 12.3224 -1.8431 -1.9424 24 6 12.0113 -3.3568 -0.4577 25 7 12.7553 -4.2496 -1.0754 26 14 11.1812 -3.7900 1.1587 27 1 9.8367 -4.3594 0.8877 28 1 12.0046 -4.7894 1.8857 29 1 11.0424 -2.5658 1.9876 30 6 8.5633 0.4377 -0.0032 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 2.2573 3.7952 -0.0011 39 1 3.4593 5.9648 -0.0038 40 1 5.9226 5.9873 -0.0046 41 1 7.9402 3.5829 -0.6198 42 1 8.5574 3.1936 1.0140 43 1 8.8814 1.7622 -2.4497 44 1 9.5762 3.3990 -2.5282 45 1 10.6460 1.9764 -2.5418 46 1 11.8676 0.6538 -1.0384 47 1 10.4342 0.0839 -1.9266 48 1 10.6377 -1.3895 0.4744 49 1 12.8728 -5.1325 -0.6913 50 1 8.3921 -0.1776 -0.8865 51 1 8.4191 -0.1589 0.8976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569846950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = -38.766858 kcal Electronic energy + Delta-G solvation = -31007.012613 eV Core-core repulsion = 26906.484776 eV Total energy + Delta-G solvation = -4100.527837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09252 -40.87764 -39.38881 -39.01334 -36.59716 -34.97404 -34.34327 -33.37821 -32.99310 -31.62696 -30.71225 -27.97310 -27.63725 -27.27629 -25.68192 -24.43793 -23.90772 -22.97302 -22.35844 -21.08155 -20.66805 -19.55204 -19.10577 -18.55759 -17.87271 -17.51206 -17.19273 -16.80678 -16.68667 -16.11780 -15.91129 -15.63817 -15.45623 -15.21878 -14.90722 -14.79899 -14.67133 -14.33038 -14.22672 -14.00154 -13.93358 -13.71144 -13.33143 -13.16404 -13.08852 -13.05093 -12.98364 -12.83584 -12.66517 -12.55909 -12.19063 -11.99252 -11.85875 -11.68818 -11.66195 -11.62832 -11.49919 -11.20722 -10.99074 -10.82673 -10.40069 -9.77758 -9.41443 -9.30550 -8.05102 -5.37565 -0.37813 0.21804 1.33620 1.38048 1.43318 1.72238 1.86433 2.04371 2.45223 2.80169 3.08780 3.26659 3.39321 3.53936 3.60553 3.68255 3.73983 3.85854 3.92707 3.98116 4.03610 4.10415 4.20789 4.25561 4.30856 4.43908 4.47429 4.48399 4.49342 4.60906 4.71585 4.75727 4.83536 4.85912 4.90195 5.01311 5.01653 5.01884 5.08732 5.10878 5.18016 5.22594 5.27379 5.27783 5.32985 5.49369 5.54417 5.74278 6.19284 6.21644 6.46898 6.72444 7.05615 7.11159 7.82421 8.00154 9.16557 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.002830 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.963862 B = 9892.598488 C =11930.932251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.046 3.954 4 O -0.310 6.310 5 C 0.122 3.878 6 C -0.172 4.172 7 C -0.084 4.084 8 C 0.055 3.945 9 N -0.428 5.428 10 C 0.009 3.991 11 C 0.567 3.433 12 O -0.570 6.570 13 N -0.599 5.599 14 C 0.114 3.886 15 C -0.089 4.089 16 H 0.123 0.877 17 C -0.140 4.140 18 C -0.096 4.096 19 H 0.095 0.905 20 C 0.167 3.833 21 N -0.761 5.761 22 C -0.230 4.230 23 H 0.061 0.939 24 C -0.062 4.062 25 N -0.982 5.982 26 Si 0.948 3.052 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.252 1.252 30 C 0.118 3.882 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.204 0.796 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.041 0.959 47 H 0.027 0.973 48 H 0.363 0.637 49 H 0.258 0.742 50 H 0.045 0.955 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.181 28.975 4.094 39.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.029 4.029 4 O -0.221 6.221 5 C 0.071 3.929 6 C -0.199 4.199 7 C -0.104 4.104 8 C -0.107 4.107 9 N -0.140 5.140 10 C -0.126 4.126 11 C 0.357 3.643 12 O -0.449 6.449 13 N -0.332 5.332 14 C -0.008 4.008 15 C -0.109 4.109 16 H 0.141 0.859 17 C -0.197 4.197 18 C -0.115 4.115 19 H 0.113 0.887 20 C 0.041 3.959 21 N -0.407 5.407 22 C -0.361 4.361 23 H 0.079 0.921 24 C -0.253 4.253 25 N -0.633 5.633 26 Si 0.775 3.225 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.176 1.176 30 C -0.005 4.005 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.192 0.808 39 H 0.207 0.793 40 H 0.220 0.780 41 H 0.134 0.866 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.045 0.955 48 H 0.196 0.804 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.435 28.069 3.931 38.083 hybrid contribution -1.044 -1.548 0.728 2.004 sum -26.479 26.522 4.659 37.766 Atomic orbital electron populations 1.21651 0.91786 1.03164 1.03188 1.21498 0.97759 0.94583 1.02581 1.23288 0.76735 0.99754 1.03087 1.86394 1.23137 1.26115 1.86466 1.20265 0.92048 0.86788 0.93797 1.22150 1.02434 0.90815 1.04457 1.22763 0.95508 0.99403 0.92718 1.23563 0.92583 0.96633 0.97947 1.67794 1.39673 0.97394 1.09100 1.20193 0.88863 0.92360 1.11232 1.17978 0.81067 0.88262 0.77040 1.90805 1.71847 1.29934 1.52289 1.48379 1.04184 1.09615 1.70978 1.22863 0.89671 0.85937 1.02282 1.22469 0.97905 0.94422 0.96078 0.85858 1.21746 1.01237 1.02323 0.94375 1.22427 0.92048 0.96237 1.00825 0.88701 1.20853 0.96784 0.83397 0.94869 1.42808 1.59981 1.11715 1.26150 1.19056 1.20941 0.92434 1.03718 0.92122 1.25432 1.01201 0.96331 1.02356 1.69862 1.45387 1.06013 1.42049 0.85513 0.77771 0.78346 0.80850 1.21324 1.21650 1.17646 1.21851 0.89414 0.88900 1.00367 0.91142 0.91187 0.91572 0.92470 0.92387 0.89797 0.89876 0.80775 0.79284 0.77953 0.86558 0.90411 0.95189 0.90120 0.92206 0.94129 0.95542 0.80432 0.93317 0.93697 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -2.17 6.30 30.59 0.19 -1.98 16 3 C 0.05 0.73 4.76 71.98 0.34 1.07 16 4 O -0.31 -8.40 8.20 -68.58 -0.56 -8.96 16 5 C 0.12 2.84 6.71 22.93 0.15 3.00 16 6 C -0.17 -2.10 9.13 22.55 0.21 -1.90 16 7 C -0.08 -0.60 10.10 22.41 0.23 -0.37 16 8 C 0.05 0.58 11.17 84.89 0.95 1.53 16 9 N -0.43 -8.52 6.59 -184.63 -1.22 -9.74 16 10 C 0.01 0.25 6.73 41.93 0.28 0.53 16 11 C 0.57 20.29 7.83 86.78 0.68 20.96 16 12 O -0.57 -25.13 15.47 17.11 0.26 -24.86 16 13 N -0.60 -19.27 3.31 -815.22 -2.70 -21.97 16 14 C 0.11 2.62 5.39 86.85 0.47 3.09 16 15 C -0.09 -2.03 3.54 -9.40 -0.03 -2.06 16 16 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 17 C -0.14 -3.30 8.13 71.98 0.59 -2.71 16 18 C -0.10 -2.97 2.88 -9.60 -0.03 -3.00 16 19 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 20 C 0.17 6.52 4.52 86.38 0.39 6.91 16 21 N -0.76 -37.60 5.25 -343.44 -1.80 -39.40 16 22 C -0.23 -13.76 10.47 84.03 0.88 -12.88 16 23 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 24 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 25 N -0.98 -65.27 13.97 21.65 0.30 -64.97 16 26 Si 0.95 48.49 27.74 68.60 1.90 50.39 16 27 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 28 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 29 H -0.25 -11.70 6.52 99.48 0.65 -11.05 16 30 C 0.12 4.25 5.83 86.73 0.51 4.76 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.08 0.93 7.70 -2.39 -0.02 0.91 16 37 H 0.08 0.93 7.70 -2.39 -0.02 0.92 16 38 H 0.17 0.97 6.46 -2.91 -0.02 0.95 16 39 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 40 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.12 2.42 5.80 -2.39 -0.01 2.41 16 42 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.03 0.85 7.91 -2.39 -0.02 0.83 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.50 6.76 -2.39 -0.02 1.48 16 46 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.03 1.09 6.67 -2.39 -0.02 1.07 16 48 H 0.36 17.49 5.38 -92.71 -0.50 16.99 16 49 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 50 H 0.04 1.88 7.76 -2.39 -0.02 1.86 16 51 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -87.13 404.36 3.54 -83.59 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.37 Total: 23.00 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.98 Total: 12.91 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -5.42 Total: -136.08 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.30 Total: -33.82 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.90 Total: 50.39 kcal Total: -87.13 3.54 -83.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569846950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.825 kcal (2) G-P(sol) polarization free energy of solvation -87.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds