Wall clock time and date at job start Wed Apr 1 2020 04:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 O 1.42895 * 109.46895 * 120.00421 * 2 1 3 5 5 C 1.35670 * 116.99955 * 150.00059 * 4 2 1 6 6 C 1.39287 * 119.61592 * 179.97438 * 5 4 2 7 7 C 1.38336 * 119.30441 * 180.02562 * 6 5 4 8 8 C 1.38788 * 118.55619 * 0.02562 * 7 6 5 9 9 C 1.39125 * 119.18923 * 359.97438 * 8 7 6 10 10 C 1.48152 * 119.68724 * 180.02562 * 9 8 7 11 11 O 1.21514 * 120.00403 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99823 * 180.02562 * 10 9 8 13 13 C 1.47486 * 125.59151 * 359.95063 * 12 10 9 14 14 C 1.54325 * 107.03329 * 181.07152 * 13 12 10 15 15 C 1.55161 * 103.10246 * 22.23813 * 14 13 12 16 16 H 1.08996 * 111.00337 * 82.48625 * 15 14 13 17 17 C 1.52996 * 111.00310 * 206.33478 * 15 14 13 18 18 N 1.46497 * 109.47248 * 184.99873 * 17 15 14 19 19 C 1.46502 * 119.99690 * 90.00071 * 18 17 15 20 20 C 1.36936 * 120.00217 * 270.00060 * 18 17 15 21 21 H 1.07999 * 119.99583 * 22.84239 * 20 18 17 22 22 C 1.38810 * 120.00368 * 202.83710 * 20 18 17 23 23 N 1.31627 * 119.99612 * 13.25049 * 22 20 18 24 24 Si 1.86793 * 120.00162 * 193.25298 * 22 20 18 25 25 H 1.48497 * 109.47393 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47301 * 120.00331 * 24 22 20 27 27 H 1.48501 * 109.47072 * 239.99922 * 24 22 20 28 28 C 1.47424 * 125.64922 * 180.02562 * 12 10 9 29 29 N 1.31903 * 119.61794 * 0.29217 * 5 4 2 30 30 H 1.09002 * 109.47282 * 299.99479 * 1 2 3 31 31 H 1.08998 * 109.47495 * 59.99838 * 1 2 3 32 32 H 1.09000 * 109.47590 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46962 * 240.00078 * 2 1 3 34 34 H 1.09002 * 109.47159 * 60.00198 * 3 2 1 35 35 H 1.08997 * 109.46924 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47550 * 300.00228 * 3 2 1 37 37 H 1.07993 * 120.35309 * 359.97438 * 6 5 4 38 38 H 1.07994 * 120.72445 * 180.02562 * 7 6 5 39 39 H 1.07994 * 120.40235 * 179.97438 * 8 7 6 40 40 H 1.09000 * 110.03297 * 61.70695 * 13 12 10 41 41 H 1.09004 * 109.96343 * 300.39289 * 13 12 10 42 42 H 1.09000 * 110.71910 * 263.78855 * 14 13 12 43 43 H 1.08999 * 110.71840 * 140.69169 * 14 13 12 44 44 H 1.09003 * 109.47141 * 305.00426 * 17 15 14 45 45 H 1.09008 * 109.47248 * 65.00121 * 17 15 14 46 46 H 1.09003 * 109.47230 * 95.13164 * 19 18 17 47 47 H 1.09004 * 109.46869 * 215.12594 * 19 18 17 48 48 H 1.09001 * 109.47296 * 335.12751 * 19 18 17 49 49 H 0.96999 * 119.99692 * 179.97438 * 23 22 20 50 50 H 1.08998 * 110.36817 * 37.00112 * 28 12 10 51 51 H 1.09007 * 110.45629 * 274.73139 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 3.1986 -1.3130 1.0652 6 6 3.7145 -1.9869 2.1696 7 6 4.9310 -2.6362 2.0591 8 6 5.5986 -2.5919 0.8431 9 6 5.0266 -1.9005 -0.2202 10 6 5.7294 -1.8466 -1.5233 11 8 6.8000 -2.4049 -1.6598 12 7 5.1813 -1.1782 -2.5574 13 6 3.8932 -0.4604 -2.5294 14 6 3.6697 0.1224 -3.9408 15 6 4.5640 -0.7743 -4.8373 16 1 4.0533 -1.7022 -5.0947 17 6 5.0038 -0.0254 -6.0968 18 7 5.7440 -0.9364 -6.9733 19 6 5.0309 -1.7202 -7.9850 20 6 7.1023 -1.0554 -6.8470 21 1 7.5828 -0.7950 -5.9155 22 6 7.8615 -1.5109 -7.9160 23 7 7.3303 -1.5800 -9.1184 24 14 9.6371 -2.0258 -7.6484 25 1 9.9919 -1.8541 -6.2167 26 1 9.8025 -3.4507 -8.0324 27 1 10.5286 -1.1814 -8.4835 28 6 5.7690 -1.0452 -3.9028 29 7 3.8587 -1.2839 -0.0764 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4424 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 3.1710 -2.0018 3.1027 38 1 5.3521 -3.1660 2.9006 39 1 6.5504 -3.0879 0.7238 40 1 3.9308 0.3459 -1.7970 41 1 3.0873 -1.1515 -2.2819 42 1 3.9974 1.1610 -3.9854 43 1 2.6228 0.0369 -4.2320 44 1 4.1253 0.3502 -6.6216 45 1 5.6449 0.8107 -5.8172 46 1 5.0627 -1.1957 -8.9400 47 1 5.5059 -2.6956 -8.0902 48 1 3.9935 -1.8525 -7.6775 49 1 7.8610 -1.8979 -9.8655 50 1 6.2720 -1.9685 -4.1901 51 1 6.4674 -0.2087 -3.9325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664849242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:28 Heat of formation + Delta-G solvation = -3.918205 kcal Electronic energy + Delta-G solvation = -31608.696983 eV Core-core repulsion = 27509.680297 eV Total energy + Delta-G solvation = -4099.016686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.17251 -39.65566 -38.45086 -37.33892 -35.32166 -33.62397 -33.10132 -32.01948 -30.69637 -30.32953 -28.77691 -27.57119 -26.24860 -25.80094 -24.71114 -23.69625 -22.75169 -21.47900 -21.16211 -20.27294 -19.56552 -18.09861 -17.62304 -16.83604 -16.32753 -16.19810 -15.93985 -15.67860 -15.42812 -14.84896 -14.68293 -14.39771 -14.14761 -13.70495 -13.65431 -13.40265 -13.23695 -13.03408 -12.89440 -12.66246 -12.61393 -12.49605 -12.31132 -12.20096 -12.15201 -11.76967 -11.30950 -11.20004 -11.19103 -10.95886 -10.78094 -10.64234 -10.42398 -10.36943 -10.29945 -10.21274 -10.08083 -9.85457 -9.72417 -9.56369 -8.84008 -8.49434 -8.35507 -6.69810 -5.67646 -3.14281 0.45555 0.98970 2.68154 2.74136 3.03095 3.43104 3.51057 3.55070 3.68419 3.82286 4.45538 4.54636 4.57560 4.63931 4.65936 4.72848 4.88937 4.91535 4.93361 5.03705 5.16479 5.22949 5.24911 5.41266 5.46252 5.48331 5.52597 5.60062 5.63711 5.73954 5.76120 5.81401 5.86096 5.91766 6.00497 6.03709 6.09522 6.21618 6.24134 6.40921 6.49645 6.55824 6.67594 6.78522 6.94132 6.96159 7.40380 7.41214 7.67657 7.76546 7.86922 8.23660 8.44373 9.28608 9.92127 10.40450 11.37043 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002906 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.108883 B = 9632.258974 C =11208.776335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.076 3.924 3 C -0.170 4.170 4 O -0.301 6.301 5 C 0.320 3.680 6 C -0.173 4.173 7 C -0.047 4.047 8 C -0.151 4.151 9 C 0.130 3.870 10 C 0.574 3.426 11 O -0.530 6.530 12 N -0.597 5.597 13 C 0.119 3.881 14 C -0.136 4.136 15 C -0.116 4.116 16 H 0.076 0.924 17 C 0.163 3.837 18 N -0.602 5.602 19 C 0.162 3.838 20 C -0.252 4.252 21 H 0.070 0.930 22 C 0.002 3.998 23 N -0.908 5.908 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.121 3.879 29 N -0.511 5.511 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.031 0.969 47 H 0.040 0.960 48 H -0.004 1.004 49 H 0.251 0.749 50 H 0.086 0.914 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 3.170 22.504 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 C -0.227 4.227 4 O -0.209 6.209 5 C 0.139 3.861 6 C -0.194 4.194 7 C -0.072 4.072 8 C -0.172 4.172 9 C -0.007 4.007 10 C 0.361 3.639 11 O -0.407 6.407 12 N -0.329 5.329 13 C -0.003 4.003 14 C -0.174 4.174 15 C -0.138 4.138 16 H 0.095 0.905 17 C 0.034 3.966 18 N -0.324 5.324 19 C 0.018 3.982 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.196 4.196 23 N -0.553 5.553 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.000 4.000 29 N -0.238 5.238 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.015 0.985 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.345 3.267 21.777 26.280 hybrid contribution 1.265 -0.702 0.626 1.576 sum -13.080 2.565 22.402 26.068 Atomic orbital electron populations 1.21911 0.92763 1.03024 1.03086 1.22508 0.94581 0.92914 0.88008 1.22249 1.02177 0.95517 1.02806 1.86300 1.31341 1.64402 1.38828 1.19812 0.86265 0.90432 0.89578 1.21272 0.97805 1.01409 0.98933 1.21438 0.92847 0.95452 0.97501 1.22000 1.02299 1.00513 0.92432 1.20861 0.90318 0.94731 0.94799 1.17497 0.84632 0.79450 0.82356 1.90824 1.21231 1.46010 1.82618 1.48618 1.22108 1.50262 1.11892 1.22221 0.85125 0.95788 0.97198 1.22802 1.00600 1.00096 0.93950 1.23193 0.94444 0.99691 0.96454 0.90522 1.20657 0.95123 0.91728 0.89061 1.43913 1.03855 1.45959 1.38701 1.20784 0.90152 0.95693 0.91590 1.19237 0.82376 1.40308 0.96269 0.91213 1.25000 0.97805 1.01872 0.94924 1.70083 1.35899 1.50705 0.98609 0.86256 0.85031 0.78062 0.77745 1.20092 1.21644 1.21813 1.22411 0.96169 1.03080 0.78358 1.67442 1.09366 1.22414 1.24572 0.91710 0.90255 0.91842 0.88863 0.92026 0.91931 0.90721 0.83821 0.83412 0.83155 0.91201 0.91394 0.90759 0.90565 0.94004 0.93211 0.95117 0.94167 0.98495 0.93904 0.89532 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.65 3.10 -26.73 -0.08 0.56 16 3 C -0.17 -1.32 9.31 37.16 0.35 -0.98 16 4 O -0.30 -3.05 9.76 -18.71 -0.18 -3.23 16 5 C 0.32 3.48 7.46 -17.13 -0.13 3.35 16 6 C -0.17 -1.52 10.05 -39.16 -0.39 -1.91 16 7 C -0.05 -0.39 10.16 -39.34 -0.40 -0.79 16 8 C -0.15 -1.72 9.63 -39.05 -0.38 -2.09 16 9 C 0.13 1.78 6.72 -83.03 -0.56 1.23 16 10 C 0.57 9.78 7.84 -12.19 -0.10 9.69 16 11 O -0.53 -10.73 16.57 5.35 0.09 -10.64 16 12 N -0.60 -9.70 3.34 -171.15 -0.57 -10.27 16 13 C 0.12 1.53 4.79 -2.81 -0.01 1.51 16 14 C -0.14 -1.69 6.41 -24.89 -0.16 -1.85 16 15 C -0.12 -1.92 3.26 -88.49 -0.29 -2.21 16 16 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 17 C 0.16 3.15 5.17 -4.05 -0.02 3.13 16 18 N -0.60 -14.79 2.91 -181.12 -0.53 -15.32 16 19 C 0.16 3.97 8.98 59.85 0.54 4.51 16 20 C -0.25 -6.87 9.16 -15.06 -0.14 -7.01 16 21 H 0.07 1.87 7.13 -52.49 -0.37 1.50 16 22 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 23 N -0.91 -26.69 10.71 55.49 0.59 -26.09 16 24 Si 0.90 22.47 29.57 -169.99 -5.03 17.44 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 C 0.12 2.21 5.23 -2.54 -0.01 2.20 16 29 N -0.51 -6.28 5.27 -9.87 -0.05 -6.33 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.89 4.92 -51.93 -0.26 0.63 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.58 7.63 -51.93 -0.40 0.19 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.15 1.68 7.63 -52.49 -0.40 1.28 16 40 H 0.07 0.84 6.78 -51.93 -0.35 0.49 16 41 H 0.07 0.84 6.13 -51.93 -0.32 0.53 16 42 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 45 H 0.05 0.97 7.86 -51.92 -0.41 0.56 16 46 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 47 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 48 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.09 1.87 8.04 -51.93 -0.42 1.45 16 51 H 0.07 1.32 7.79 -51.93 -0.40 0.91 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -32.56 405.52 -9.36 -41.92 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.28 Total: -2.28 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -1.52 Total: 8.69 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.56 Total: -58.01 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.56 -9.36 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664849242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.002 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds