Wall clock time and date at job start Wed Apr 1 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 O 1.42895 * 109.46895 * 120.00421 * 2 1 3 5 5 C 1.35670 * 116.99955 * 150.00059 * 4 2 1 6 6 C 1.39287 * 119.61592 * 179.97438 * 5 4 2 7 7 C 1.38336 * 119.30441 * 180.02562 * 6 5 4 8 8 C 1.38788 * 118.55619 * 0.02562 * 7 6 5 9 9 C 1.39125 * 119.18923 * 359.97438 * 8 7 6 10 10 C 1.48152 * 119.68724 * 180.02562 * 9 8 7 11 11 O 1.21514 * 120.00403 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99823 * 180.02562 * 10 9 8 13 13 C 1.47486 * 125.59151 * 359.95063 * 12 10 9 14 14 C 1.54325 * 107.03329 * 181.07152 * 13 12 10 15 15 C 1.55161 * 103.10246 * 22.23813 * 14 13 12 16 16 H 1.08996 * 111.00337 * 82.48625 * 15 14 13 17 17 C 1.52996 * 111.00310 * 206.33478 * 15 14 13 18 18 N 1.46497 * 109.47248 * 184.99873 * 17 15 14 19 19 C 1.46502 * 119.99690 * 90.00071 * 18 17 15 20 20 C 1.36936 * 120.00217 * 270.00060 * 18 17 15 21 21 H 1.07999 * 119.99583 * 22.84239 * 20 18 17 22 22 C 1.38810 * 120.00368 * 202.83710 * 20 18 17 23 23 N 1.31627 * 119.99612 * 13.25049 * 22 20 18 24 24 Si 1.86793 * 120.00162 * 193.25298 * 22 20 18 25 25 H 1.48497 * 109.47393 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47301 * 120.00331 * 24 22 20 27 27 H 1.48501 * 109.47072 * 239.99922 * 24 22 20 28 28 C 1.47424 * 125.64922 * 180.02562 * 12 10 9 29 29 N 1.31903 * 119.61794 * 0.29217 * 5 4 2 30 30 H 1.09002 * 109.47282 * 299.99479 * 1 2 3 31 31 H 1.08998 * 109.47495 * 59.99838 * 1 2 3 32 32 H 1.09000 * 109.47590 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46962 * 240.00078 * 2 1 3 34 34 H 1.09002 * 109.47159 * 60.00198 * 3 2 1 35 35 H 1.08997 * 109.46924 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47550 * 300.00228 * 3 2 1 37 37 H 1.07993 * 120.35309 * 359.97438 * 6 5 4 38 38 H 1.07994 * 120.72445 * 180.02562 * 7 6 5 39 39 H 1.07994 * 120.40235 * 179.97438 * 8 7 6 40 40 H 1.09000 * 110.03297 * 61.70695 * 13 12 10 41 41 H 1.09004 * 109.96343 * 300.39289 * 13 12 10 42 42 H 1.09000 * 110.71910 * 263.78855 * 14 13 12 43 43 H 1.08999 * 110.71840 * 140.69169 * 14 13 12 44 44 H 1.09003 * 109.47141 * 305.00426 * 17 15 14 45 45 H 1.09008 * 109.47248 * 65.00121 * 17 15 14 46 46 H 1.09003 * 109.47230 * 95.13164 * 19 18 17 47 47 H 1.09004 * 109.46869 * 215.12594 * 19 18 17 48 48 H 1.09001 * 109.47296 * 335.12751 * 19 18 17 49 49 H 0.96999 * 119.99692 * 179.97438 * 23 22 20 50 50 H 1.08998 * 110.36817 * 37.00112 * 28 12 10 51 51 H 1.09007 * 110.45629 * 274.73139 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 3.1986 -1.3130 1.0652 6 6 3.7145 -1.9869 2.1696 7 6 4.9310 -2.6362 2.0591 8 6 5.5986 -2.5919 0.8431 9 6 5.0266 -1.9005 -0.2202 10 6 5.7294 -1.8466 -1.5233 11 8 6.8000 -2.4049 -1.6598 12 7 5.1813 -1.1782 -2.5574 13 6 3.8932 -0.4604 -2.5294 14 6 3.6697 0.1224 -3.9408 15 6 4.5640 -0.7743 -4.8373 16 1 4.0533 -1.7022 -5.0947 17 6 5.0038 -0.0254 -6.0968 18 7 5.7440 -0.9364 -6.9733 19 6 5.0309 -1.7202 -7.9850 20 6 7.1023 -1.0554 -6.8470 21 1 7.5828 -0.7950 -5.9155 22 6 7.8615 -1.5109 -7.9160 23 7 7.3303 -1.5800 -9.1184 24 14 9.6371 -2.0258 -7.6484 25 1 9.9919 -1.8541 -6.2167 26 1 9.8025 -3.4507 -8.0324 27 1 10.5286 -1.1814 -8.4835 28 6 5.7690 -1.0452 -3.9028 29 7 3.8587 -1.2839 -0.0764 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4424 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 3.1710 -2.0018 3.1027 38 1 5.3521 -3.1660 2.9006 39 1 6.5504 -3.0879 0.7238 40 1 3.9308 0.3459 -1.7970 41 1 3.0873 -1.1515 -2.2819 42 1 3.9974 1.1610 -3.9854 43 1 2.6228 0.0369 -4.2320 44 1 4.1253 0.3502 -6.6216 45 1 5.6449 0.8107 -5.8172 46 1 5.0627 -1.1957 -8.9400 47 1 5.5059 -2.6956 -8.0902 48 1 3.9935 -1.8525 -7.6775 49 1 7.8610 -1.8979 -9.8655 50 1 6.2720 -1.9685 -4.1901 51 1 6.4674 -0.2087 -3.9325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664849242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:27 Heat of formation + Delta-G solvation = -23.689161 kcal Electronic energy + Delta-G solvation = -31609.554316 eV Core-core repulsion = 27509.680297 eV Total energy + Delta-G solvation = -4099.874019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07274 -40.80045 -39.39382 -38.61889 -37.12062 -34.40894 -34.07770 -33.47600 -32.24412 -31.28055 -30.13596 -28.11109 -27.86826 -27.69080 -25.86740 -24.60500 -23.96863 -22.80580 -22.15046 -21.36725 -21.00783 -18.93221 -18.81788 -18.72420 -17.36479 -17.10452 -16.90880 -16.82452 -16.71443 -16.51246 -15.80427 -15.40263 -15.24515 -15.13832 -14.86995 -14.67223 -14.45989 -14.31258 -14.08440 -13.86830 -13.71038 -13.26406 -13.17984 -13.14927 -13.04890 -13.02932 -12.88632 -12.80300 -12.68610 -12.32087 -12.18905 -12.00040 -11.92390 -11.85823 -11.62885 -11.59492 -11.51152 -11.42849 -10.99326 -10.62930 -10.55261 -9.84564 -9.50899 -8.74142 -7.82116 -5.29200 -0.44491 0.22522 1.40569 1.44020 1.53691 1.61493 1.80399 2.00210 2.49486 2.74425 2.86064 3.30787 3.48108 3.69765 3.76177 3.88436 3.93236 3.98567 4.00678 4.07431 4.10257 4.19330 4.26430 4.37858 4.46517 4.52319 4.72940 4.74156 4.76636 4.84308 4.86240 4.88908 4.90678 4.92085 4.95337 4.99058 4.99634 5.07710 5.10676 5.22796 5.25621 5.28856 5.34474 5.39179 5.39750 5.51731 5.66443 5.74568 6.17452 6.34757 6.40325 6.56716 6.96400 7.17681 7.90700 8.32443 9.20593 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002906 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.108883 B = 9632.258974 C =11208.776335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.166 4.166 4 O -0.305 6.305 5 C 0.307 3.693 6 C -0.159 4.159 7 C -0.033 4.033 8 C -0.155 4.155 9 C 0.102 3.898 10 C 0.566 3.434 11 O -0.578 6.578 12 N -0.600 5.600 13 C 0.125 3.875 14 C -0.121 4.121 15 C -0.104 4.104 16 H 0.067 0.933 17 C 0.162 3.838 18 N -0.619 5.619 19 C 0.176 3.824 20 C -0.248 4.248 21 H 0.066 0.934 22 C -0.052 4.052 23 N -0.936 5.936 24 Si 0.953 3.047 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.288 1.288 28 C 0.125 3.875 29 N -0.517 5.517 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.176 0.824 38 H 0.189 0.811 39 H 0.145 0.855 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.007 0.993 47 H 0.008 0.992 48 H 0.034 0.966 49 H 0.247 0.753 50 H 0.042 0.958 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.003 4.124 25.386 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.223 4.223 4 O -0.212 6.212 5 C 0.125 3.875 6 C -0.179 4.179 7 C -0.058 4.058 8 C -0.177 4.177 9 C -0.033 4.033 10 C 0.354 3.646 11 O -0.458 6.458 12 N -0.331 5.331 13 C 0.003 3.997 14 C -0.159 4.159 15 C -0.126 4.126 16 H 0.086 0.914 17 C 0.035 3.965 18 N -0.342 5.342 19 C 0.031 3.969 20 C -0.379 4.379 21 H 0.084 0.916 22 C -0.247 4.247 23 N -0.584 5.584 24 Si 0.783 3.217 25 H -0.200 1.200 26 H -0.220 1.220 27 H -0.215 1.215 28 C 0.003 3.997 29 N -0.244 5.244 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.193 0.807 38 H 0.206 0.794 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.025 0.975 47 H 0.027 0.973 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.889 4.256 24.690 30.215 hybrid contribution 1.943 -0.972 -0.122 2.177 sum -14.946 3.284 24.568 28.944 Atomic orbital electron populations 1.21914 0.91125 1.03168 1.04142 1.22680 0.95828 0.92941 0.87168 1.22221 1.00922 0.95314 1.03861 1.86314 1.30892 1.64483 1.39528 1.20159 0.86547 0.90973 0.89799 1.21723 0.97550 0.99304 0.99341 1.21847 0.92191 0.94617 0.97151 1.22132 1.02343 1.00025 0.93184 1.20405 0.91577 0.97655 0.93691 1.18145 0.84307 0.78501 0.83604 1.90775 1.23376 1.47991 1.83692 1.48716 1.23100 1.50415 1.10861 1.22367 0.83515 0.95946 0.97850 1.22811 1.01425 0.99642 0.92006 1.22905 0.94358 0.99928 0.95414 0.91446 1.20852 0.95334 0.91030 0.89254 1.44155 1.03447 1.47155 1.39401 1.20534 0.91742 0.93728 0.90902 1.19457 0.83925 1.38748 0.95767 0.91591 1.25630 1.01034 1.03035 0.94999 1.70212 1.36856 1.52269 0.99037 0.85401 0.81556 0.77341 0.77431 1.20028 1.21988 1.21479 1.22142 0.96793 1.00299 0.80446 1.67256 1.08872 1.22533 1.25732 0.91220 0.88650 0.92151 0.89891 0.91556 0.93747 0.89137 0.80678 0.79352 0.83753 0.89999 0.90596 0.89333 0.87348 0.91586 0.93461 0.97473 0.97294 0.94757 0.94406 0.93898 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.56 71.98 0.69 -0.79 16 2 C 0.07 1.01 3.10 30.59 0.09 1.11 16 3 C -0.17 -2.17 9.31 71.98 0.67 -1.50 16 4 O -0.30 -5.39 9.76 -89.87 -0.88 -6.27 16 5 C 0.31 5.96 7.46 84.93 0.63 6.59 16 6 C -0.16 -2.22 10.05 22.55 0.23 -1.99 16 7 C -0.03 -0.45 10.16 22.42 0.23 -0.22 16 8 C -0.15 -3.40 9.63 22.61 0.22 -3.18 16 9 C 0.10 2.80 6.72 41.84 0.28 3.08 16 10 C 0.57 20.07 7.84 86.88 0.68 20.75 16 11 O -0.58 -24.93 16.57 -3.76 -0.06 -25.00 16 12 N -0.60 -19.87 3.34 -813.70 -2.72 -22.59 16 13 C 0.12 2.99 4.79 86.64 0.42 3.41 16 14 C -0.12 -2.65 6.41 31.78 0.20 -2.45 16 15 C -0.10 -3.38 3.26 -9.41 -0.03 -3.41 16 16 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.16 6.10 5.17 86.38 0.45 6.55 16 18 N -0.62 -30.72 2.91 -726.93 -2.11 -32.83 16 19 C 0.18 8.70 8.98 127.77 1.15 9.85 16 20 C -0.25 -13.87 9.16 84.03 0.77 -13.10 16 21 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 22 C -0.05 -3.02 5.10 84.86 0.43 -2.59 16 23 N -0.94 -56.62 10.71 21.65 0.23 -56.38 16 24 Si 0.95 47.66 29.57 68.60 2.03 49.69 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 C 0.13 4.76 5.23 86.85 0.45 5.22 16 29 N -0.52 -12.06 5.27 -298.20 -1.57 -13.63 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 1.39 4.92 -2.39 -0.01 1.37 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 0.75 7.63 -2.39 -0.02 0.73 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 39 H 0.14 3.28 7.63 -2.91 -0.02 3.26 16 40 H 0.08 1.82 6.78 -2.39 -0.02 1.80 16 41 H 0.08 1.74 6.13 -2.38 -0.01 1.73 16 42 H 0.09 1.76 8.04 -2.39 -0.02 1.74 16 43 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 45 H 0.05 1.81 7.86 -2.38 -0.02 1.79 16 46 H 0.01 0.38 7.34 -2.39 -0.02 0.36 16 47 H 0.01 0.46 7.34 -2.38 -0.02 0.44 16 48 H 0.03 1.40 8.03 -2.39 -0.02 1.39 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 51 H 0.06 2.26 7.79 -2.38 -0.02 2.24 16 Total: -1.00 -75.04 405.52 3.40 -71.64 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.91 Total: 8.04 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 7.56 Total: 27.33 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -6.17 Total: -125.44 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.94 Total: -31.26 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -75.04 3.40 -71.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664849242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.955 kcal (2) G-P(sol) polarization free energy of solvation -75.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds