Wall clock time and date at job start Wed Apr 1 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47463 * 2 1 4 4 O 1.42906 * 109.46974 * 120.00169 * 2 1 3 5 5 C 1.35424 * 116.99718 * 89.99792 * 4 2 1 6 6 N 1.32231 * 119.80388 * 0.02562 * 5 4 2 7 7 C 1.31879 * 121.79761 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.19034 * 0.02562 * 7 6 5 9 9 C 1.38341 * 119.45729 * 359.97438 * 8 7 6 10 10 C 1.39985 * 118.34837 * 0.25326 * 9 8 7 11 11 C 1.47523 * 120.59724 * 179.72658 * 10 9 8 12 12 O 1.21590 * 120.00210 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00081 * 359.97438 * 11 10 9 14 14 C 1.46497 * 119.99762 * 180.02562 * 13 11 10 15 15 H 1.08994 * 110.01661 * 326.38365 * 14 13 11 16 16 C 1.53869 * 110.03547 * 87.83447 * 14 13 11 17 17 C 1.54271 * 106.60315 * 119.28105 * 16 14 13 18 18 C 1.54888 * 104.19119 * 336.38979 * 17 16 14 19 19 C 1.54276 * 110.02786 * 204.99842 * 14 13 11 20 20 H 1.08996 * 110.48577 * 145.51438 * 19 14 13 21 21 C 1.52999 * 110.48722 * 23.00258 * 19 14 13 22 22 N 1.46497 * 109.47383 * 175.00228 * 21 19 14 23 23 C 1.36938 * 120.00029 * 180.02562 * 22 21 19 24 24 H 1.07995 * 120.00323 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99816 * 179.97438 * 23 22 21 26 26 N 1.31615 * 120.00284 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99906 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47409 * 90.00068 * 27 25 23 29 29 H 1.48498 * 109.47136 * 210.00072 * 27 25 23 30 30 H 1.48498 * 109.47476 * 329.99934 * 27 25 23 31 31 H 1.09002 * 109.46575 * 59.99778 * 1 2 3 32 32 H 1.08994 * 109.46969 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46688 * 300.00390 * 1 2 3 34 34 H 1.08998 * 109.47291 * 240.00020 * 2 1 3 35 35 H 1.08998 * 109.47514 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47139 * 300.00193 * 3 2 1 37 37 H 1.09007 * 109.47133 * 59.99779 * 3 2 1 38 38 H 1.08002 * 119.40214 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.27365 * 180.02562 * 8 7 6 40 40 H 1.08002 * 120.82299 * 179.97438 * 9 8 7 41 41 H 0.96998 * 119.99963 * 359.97438 * 13 11 10 42 42 H 1.08996 * 110.03318 * 238.56488 * 16 14 13 43 43 H 1.09004 * 110.03353 * 359.97438 * 16 14 13 44 44 H 1.08996 * 110.48354 * 217.71350 * 17 16 14 45 45 H 1.08994 * 110.59594 * 95.11751 * 17 16 14 46 46 H 1.09008 * 110.75540 * 279.62706 * 18 17 16 47 47 H 1.08998 * 110.91607 * 156.33029 * 18 17 16 48 48 H 1.09007 * 109.46924 * 295.00059 * 21 19 14 49 49 H 1.09008 * 109.47142 * 54.99704 * 21 19 14 50 50 H 0.97003 * 119.99593 * 359.97438 * 22 21 19 51 51 H 0.97003 * 120.00523 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2112 -2.0085 1.0654 6 7 1.9703 -2.6253 -0.0792 7 6 2.1556 -3.9233 -0.2215 8 6 2.6126 -4.7011 0.8274 9 6 2.8808 -4.1076 2.0480 10 6 2.6721 -2.7295 2.1771 11 6 2.9363 -2.0468 3.4579 12 8 2.7518 -0.8491 3.5579 13 7 3.3823 -2.7506 4.5173 14 6 3.6441 -2.0727 5.7893 15 1 4.0079 -1.0619 5.6054 16 6 2.3601 -2.0262 6.6359 17 6 2.6632 -2.7941 7.9391 18 6 3.8286 -3.7411 7.5595 19 6 4.6828 -2.8674 6.6076 20 1 5.3194 -2.1900 7.1766 21 6 5.5292 -3.7488 5.6868 22 7 6.5830 -4.4009 6.4681 23 6 7.4700 -5.2432 5.8525 24 1 7.3924 -5.4271 4.7911 25 6 8.4688 -5.8607 6.5927 26 7 9.3211 -6.6706 6.0012 27 14 8.6034 -5.5420 8.4284 28 1 7.7853 -6.5386 9.1652 29 1 10.0229 -5.6592 8.8484 30 1 8.1089 -4.1748 8.7311 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.9469 -4.3873 -1.1741 39 1 2.7595 -5.7627 0.6943 40 1 3.2379 -4.6939 2.8818 41 1 3.5291 -3.7061 4.4377 42 1 2.1003 -0.9924 6.8636 43 1 1.5419 -2.5076 6.1002 44 1 1.7923 -3.3685 8.2547 45 1 2.9715 -2.1065 8.7265 46 1 3.4553 -4.6249 7.0419 47 1 4.4022 -4.0254 8.4417 48 1 4.8957 -4.5074 5.2269 49 1 5.9814 -3.1330 4.9093 50 1 6.6528 -4.2354 7.4213 51 1 10.0193 -7.1018 6.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667779586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:40 Heat of formation + Delta-G solvation = -29.358242 kcal Electronic energy + Delta-G solvation = -31218.066140 eV Core-core repulsion = 27117.946291 eV Total energy + Delta-G solvation = -4100.119849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12293 -39.78769 -38.40255 -37.79808 -34.59654 -33.79643 -33.41990 -32.50313 -31.59420 -30.49739 -29.06422 -27.69718 -27.46396 -24.91247 -24.58632 -23.73844 -22.05677 -21.51520 -20.94254 -20.39782 -19.41070 -18.74680 -17.89778 -17.48750 -16.99041 -15.98640 -15.83691 -15.43581 -14.95187 -14.91688 -14.82718 -14.57367 -14.39193 -14.03602 -14.01201 -13.78498 -13.37510 -13.26749 -13.15569 -12.69059 -12.61391 -12.51879 -12.48292 -12.41953 -12.14295 -11.80646 -11.52343 -11.14460 -11.00950 -10.97146 -10.96627 -10.91526 -10.52754 -10.48483 -10.41772 -10.15577 -10.14557 -10.09503 -9.62847 -9.59411 -8.96712 -8.93063 -8.65695 -7.27152 -5.80348 -3.16017 0.51393 1.05235 2.81382 2.89449 3.18233 3.34829 3.37502 3.43094 3.69985 4.01294 4.48148 4.55815 4.56788 4.64425 4.67535 4.72837 4.77288 4.77575 4.91794 4.97932 5.02208 5.23885 5.30510 5.33312 5.45438 5.52836 5.54179 5.55285 5.58376 5.61304 5.64418 5.67295 5.74782 5.79833 5.83375 5.85527 5.93004 5.96602 5.98844 6.03416 6.15822 6.20036 6.34064 6.37916 6.59120 6.64482 6.69783 7.12350 7.50063 7.64213 7.95038 8.32777 8.38553 9.17560 9.90008 10.09832 11.37988 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002778 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.041296 B =10076.896608 C =11218.036063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 C -0.149 4.149 4 O -0.264 6.264 5 C 0.374 3.626 6 N -0.548 5.548 7 C 0.164 3.836 8 C -0.219 4.219 9 C -0.005 4.005 10 C -0.210 4.210 11 C 0.564 3.436 12 O -0.520 6.520 13 N -0.717 5.717 14 C 0.152 3.848 15 H 0.091 0.909 16 C -0.131 4.131 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.112 4.112 20 H 0.088 0.912 21 C 0.169 3.831 22 N -0.753 5.753 23 C -0.245 4.245 24 H 0.089 0.911 25 C 0.005 3.995 26 N -0.934 5.934 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.401 0.599 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.021 0.979 49 H 0.029 0.971 50 H 0.361 0.639 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.303 9.377 -9.778 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.168 6.168 5 C 0.194 3.806 6 N -0.272 5.272 7 C 0.008 3.992 8 C -0.240 4.240 9 C -0.031 4.031 10 C -0.216 4.216 11 C 0.350 3.650 12 O -0.397 6.397 13 N -0.371 5.371 14 C 0.047 3.953 15 H 0.109 0.891 16 C -0.170 4.170 17 C -0.162 4.162 18 C -0.153 4.153 19 C -0.132 4.132 20 H 0.106 0.894 21 C 0.041 3.959 22 N -0.399 5.399 23 C -0.375 4.375 24 H 0.107 0.893 25 C -0.191 4.191 26 N -0.582 5.582 27 Si 0.714 3.286 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.181 0.819 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.239 0.761 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.039 0.961 49 H 0.047 0.953 50 H 0.194 0.806 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.581 10.846 -10.351 25.463 hybrid contribution 0.612 -1.019 1.711 2.083 sum -19.969 9.828 -8.639 23.874 Atomic orbital electron populations 1.22204 0.94911 1.02689 1.02599 1.22427 0.94425 0.93206 0.88064 1.21875 1.02155 0.93748 1.02849 1.86594 1.78096 1.14746 1.37392 1.19805 0.87546 0.85119 0.88132 1.67408 1.23073 1.12749 1.23976 1.22651 0.90180 0.87630 0.98789 1.21957 1.05764 1.02313 0.93935 1.21740 0.90902 0.92275 0.98204 1.20062 1.12318 0.94265 0.94983 1.17760 0.77507 0.86780 0.82938 1.90810 1.51198 1.13860 1.83785 1.46129 1.67534 1.12368 1.11074 1.21566 0.94460 0.97097 0.82186 0.89085 1.22572 0.97565 1.00793 0.96040 1.22375 0.98534 0.98264 0.97069 1.22545 0.95755 0.97656 0.99390 1.22542 0.95973 0.97689 0.96957 0.89398 1.20554 0.89268 0.92967 0.93097 1.42692 1.34657 1.55465 1.07038 1.19036 1.05900 1.17646 0.94896 0.89284 1.24670 0.97728 0.99191 0.97504 1.69697 1.19599 1.33797 1.35061 0.86551 0.77106 0.77864 0.87036 1.21054 1.21741 1.20298 0.91180 0.92186 0.91856 0.89397 0.91751 0.90682 0.91415 0.81924 0.83705 0.83619 0.76122 0.91356 0.91446 0.91830 0.91656 0.91153 0.91267 0.96099 0.95327 0.80587 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.53 37.16 0.35 -1.17 16 2 C 0.08 0.81 3.11 -26.73 -0.08 0.73 16 3 C -0.15 -1.36 9.56 37.16 0.36 -1.01 16 4 O -0.26 -3.77 7.86 -39.73 -0.31 -4.08 16 5 C 0.37 5.10 7.47 -16.61 -0.12 4.98 16 6 N -0.55 -6.38 8.64 -12.98 -0.11 -6.50 16 7 C 0.16 1.47 11.17 -17.49 -0.20 1.28 16 8 C -0.22 -1.92 10.09 -39.50 -0.40 -2.31 16 9 C -0.01 -0.06 9.64 -38.89 -0.37 -0.43 16 10 C -0.21 -2.80 5.90 -104.69 -0.62 -3.42 16 11 C 0.56 8.45 7.77 -12.47 -0.10 8.36 16 12 O -0.52 -9.34 14.85 -16.48 -0.24 -9.58 16 13 N -0.72 -9.51 4.29 -53.77 -0.23 -9.75 16 14 C 0.15 2.05 3.12 -66.81 -0.21 1.84 16 15 H 0.09 1.35 7.56 -51.93 -0.39 0.95 16 16 C -0.13 -1.55 6.59 -25.61 -0.17 -1.72 16 17 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 18 C -0.12 -1.53 6.19 -24.74 -0.15 -1.68 16 19 C -0.11 -1.64 2.85 -88.96 -0.25 -1.89 16 20 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 21 C 0.17 3.06 4.73 -4.04 -0.02 3.04 16 22 N -0.75 -17.22 5.30 -59.91 -0.32 -17.54 16 23 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 24 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 25 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 26 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 27 Si 0.88 21.78 27.73 -169.99 -4.71 17.06 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.93 6.98 -51.93 -0.36 0.57 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.30 6.52 -52.49 -0.34 0.96 16 41 H 0.40 4.83 4.66 -40.82 -0.19 4.64 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.81 7.92 -51.93 -0.41 0.39 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.93 7.97 -51.92 -0.41 0.52 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.02 0.36 6.41 -51.92 -0.33 0.03 16 49 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 50 H 0.36 8.10 5.50 -40.82 -0.22 7.88 16 51 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 407.60 15.07 6.14 6.14 Total: -1.00 -34.36 407.60 -9.60 -43.96 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -8.18 Total: 10.32 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.41 Total: -1.84 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.11 Total: -61.98 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.56 Total: -13.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.36 -9.60 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667779586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.604 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds