Wall clock time and date at job start Wed Apr 1 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47463 * 2 1 4 4 O 1.42906 * 109.46974 * 120.00169 * 2 1 3 5 5 C 1.35424 * 116.99718 * 89.99792 * 4 2 1 6 6 N 1.32231 * 119.80388 * 0.02562 * 5 4 2 7 7 C 1.31879 * 121.79761 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.19034 * 0.02562 * 7 6 5 9 9 C 1.38341 * 119.45729 * 359.97438 * 8 7 6 10 10 C 1.39985 * 118.34837 * 0.25326 * 9 8 7 11 11 C 1.47523 * 120.59724 * 179.72658 * 10 9 8 12 12 O 1.21590 * 120.00210 * 179.97438 * 11 10 9 13 13 N 1.34780 * 120.00081 * 359.97438 * 11 10 9 14 14 C 1.46497 * 119.99762 * 180.02562 * 13 11 10 15 15 H 1.08994 * 110.01661 * 326.38365 * 14 13 11 16 16 C 1.53869 * 110.03547 * 87.83447 * 14 13 11 17 17 C 1.54271 * 106.60315 * 119.28105 * 16 14 13 18 18 C 1.54888 * 104.19119 * 336.38979 * 17 16 14 19 19 C 1.54276 * 110.02786 * 204.99842 * 14 13 11 20 20 H 1.08996 * 110.48577 * 145.51438 * 19 14 13 21 21 C 1.52999 * 110.48722 * 23.00258 * 19 14 13 22 22 N 1.46497 * 109.47383 * 175.00228 * 21 19 14 23 23 C 1.36938 * 120.00029 * 180.02562 * 22 21 19 24 24 H 1.07995 * 120.00323 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99816 * 179.97438 * 23 22 21 26 26 N 1.31615 * 120.00284 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99906 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47409 * 90.00068 * 27 25 23 29 29 H 1.48498 * 109.47136 * 210.00072 * 27 25 23 30 30 H 1.48498 * 109.47476 * 329.99934 * 27 25 23 31 31 H 1.09002 * 109.46575 * 59.99778 * 1 2 3 32 32 H 1.08994 * 109.46969 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46688 * 300.00390 * 1 2 3 34 34 H 1.08998 * 109.47291 * 240.00020 * 2 1 3 35 35 H 1.08998 * 109.47514 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47139 * 300.00193 * 3 2 1 37 37 H 1.09007 * 109.47133 * 59.99779 * 3 2 1 38 38 H 1.08002 * 119.40214 * 180.02562 * 7 6 5 39 39 H 1.07999 * 120.27365 * 180.02562 * 8 7 6 40 40 H 1.08002 * 120.82299 * 179.97438 * 9 8 7 41 41 H 0.96998 * 119.99963 * 359.97438 * 13 11 10 42 42 H 1.08996 * 110.03318 * 238.56488 * 16 14 13 43 43 H 1.09004 * 110.03353 * 359.97438 * 16 14 13 44 44 H 1.08996 * 110.48354 * 217.71350 * 17 16 14 45 45 H 1.08994 * 110.59594 * 95.11751 * 17 16 14 46 46 H 1.09008 * 110.75540 * 279.62706 * 18 17 16 47 47 H 1.08998 * 110.91607 * 156.33029 * 18 17 16 48 48 H 1.09007 * 109.46924 * 295.00059 * 21 19 14 49 49 H 1.09008 * 109.47142 * 54.99704 * 21 19 14 50 50 H 0.97003 * 119.99593 * 359.97438 * 22 21 19 51 51 H 0.97003 * 120.00523 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2112 -2.0085 1.0654 6 7 1.9703 -2.6253 -0.0792 7 6 2.1556 -3.9233 -0.2215 8 6 2.6126 -4.7011 0.8274 9 6 2.8808 -4.1076 2.0480 10 6 2.6721 -2.7295 2.1771 11 6 2.9363 -2.0468 3.4579 12 8 2.7518 -0.8491 3.5579 13 7 3.3823 -2.7506 4.5173 14 6 3.6441 -2.0727 5.7893 15 1 4.0079 -1.0619 5.6054 16 6 2.3601 -2.0262 6.6359 17 6 2.6632 -2.7941 7.9391 18 6 3.8286 -3.7411 7.5595 19 6 4.6828 -2.8674 6.6076 20 1 5.3194 -2.1900 7.1766 21 6 5.5292 -3.7488 5.6868 22 7 6.5830 -4.4009 6.4681 23 6 7.4700 -5.2432 5.8525 24 1 7.3924 -5.4271 4.7911 25 6 8.4688 -5.8607 6.5927 26 7 9.3211 -6.6706 6.0012 27 14 8.6034 -5.5420 8.4284 28 1 7.7853 -6.5386 9.1652 29 1 10.0229 -5.6592 8.8484 30 1 8.1089 -4.1748 8.7311 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 1.9469 -4.3873 -1.1741 39 1 2.7595 -5.7627 0.6943 40 1 3.2379 -4.6939 2.8818 41 1 3.5291 -3.7061 4.4377 42 1 2.1003 -0.9924 6.8636 43 1 1.5419 -2.5076 6.1002 44 1 1.7923 -3.3685 8.2547 45 1 2.9715 -2.1065 8.7265 46 1 3.4553 -4.6249 7.0419 47 1 4.4022 -4.0254 8.4417 48 1 4.8957 -4.5074 5.2269 49 1 5.9814 -3.1330 4.9093 50 1 6.6528 -4.2354 7.4213 51 1 10.0193 -7.1018 6.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667779586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:39 Heat of formation + Delta-G solvation = -51.623762 kcal Electronic energy + Delta-G solvation = -31219.031645 eV Core-core repulsion = 27117.946291 eV Total energy + Delta-G solvation = -4101.085354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.04540 -40.87495 -39.28944 -38.95859 -36.39759 -34.86089 -34.24217 -33.57464 -33.39923 -31.34637 -30.58645 -28.72693 -28.20177 -26.37229 -25.61827 -24.64935 -23.81417 -22.43326 -21.91115 -21.42105 -20.72459 -19.82670 -19.42296 -18.70986 -17.92919 -16.97731 -16.87479 -16.60486 -16.33010 -15.99789 -15.85155 -15.84554 -15.41884 -15.39369 -15.09866 -14.80172 -14.78785 -14.55573 -14.17459 -14.05805 -13.68412 -13.54786 -13.40443 -13.29511 -13.21022 -12.89831 -12.88401 -12.68428 -12.29249 -12.07603 -11.99888 -11.93245 -11.83665 -11.78070 -11.70601 -11.58823 -11.46520 -11.16348 -11.03495 -10.94968 -10.57481 -10.08928 -9.52694 -9.29316 -8.01743 -5.35183 -0.35415 0.22417 1.39147 1.42257 1.49526 1.86418 1.97784 2.11919 2.49457 2.79530 3.22059 3.29768 3.33572 3.66317 3.71336 3.74758 3.79394 3.90932 3.96575 4.00802 4.00867 4.17078 4.23320 4.36144 4.43521 4.48212 4.52574 4.58532 4.62883 4.66043 4.77481 4.79064 4.79980 4.84021 4.85191 4.88710 5.01592 5.08263 5.10746 5.17942 5.20895 5.22019 5.24184 5.33795 5.43075 5.47606 5.57624 5.76591 6.21774 6.26483 6.48406 6.74038 7.08823 7.21136 7.84445 8.04044 9.19614 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002778 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.041296 B =10076.896608 C =11218.036063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.067 3.933 3 C -0.145 4.145 4 O -0.292 6.292 5 C 0.355 3.645 6 N -0.556 5.556 7 C 0.167 3.833 8 C -0.210 4.210 9 C -0.009 4.009 10 C -0.238 4.238 11 C 0.562 3.438 12 O -0.559 6.559 13 N -0.710 5.710 14 C 0.154 3.846 15 H 0.074 0.926 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.104 4.104 20 H 0.087 0.913 21 C 0.168 3.832 22 N -0.754 5.754 23 C -0.233 4.233 24 H 0.058 0.942 25 C -0.063 4.063 26 N -0.984 5.984 27 Si 0.953 3.047 28 H -0.274 1.274 29 H -0.299 1.299 30 H -0.252 1.252 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.203 0.797 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.407 0.593 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.035 0.965 49 H 0.012 0.988 50 H 0.367 0.633 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 9.051 -9.303 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 C -0.202 4.202 4 O -0.197 6.197 5 C 0.175 3.825 6 N -0.281 5.281 7 C 0.010 3.990 8 C -0.230 4.230 9 C -0.035 4.035 10 C -0.244 4.244 11 C 0.349 3.651 12 O -0.438 6.438 13 N -0.364 5.364 14 C 0.049 3.951 15 H 0.092 0.908 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.123 4.123 20 H 0.105 0.895 21 C 0.042 3.958 22 N -0.399 5.399 23 C -0.363 4.363 24 H 0.076 0.924 25 C -0.255 4.255 26 N -0.634 5.634 27 Si 0.780 3.220 28 H -0.200 1.200 29 H -0.226 1.226 30 H -0.177 1.177 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.220 0.780 39 H 0.195 0.805 40 H 0.176 0.824 41 H 0.246 0.754 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.053 0.947 49 H 0.030 0.970 50 H 0.200 0.800 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.449 10.537 -9.869 26.691 hybrid contribution 1.157 -0.960 1.366 2.032 sum -21.292 9.577 -8.503 24.847 Atomic orbital electron populations 1.22147 0.93738 1.02278 1.03420 1.22672 0.95424 0.93578 0.87194 1.21894 1.01419 0.93114 1.03802 1.86559 1.78554 1.15518 1.39103 1.20011 0.88392 0.85163 0.88925 1.67482 1.23397 1.14050 1.23129 1.23407 0.88392 0.86759 1.00410 1.22355 1.04029 1.03825 0.92811 1.21978 0.90630 0.91234 0.99614 1.20070 1.14557 0.95508 0.94305 1.18083 0.76828 0.86437 0.83705 1.90776 1.53096 1.15457 1.84482 1.46061 1.66968 1.12516 1.10817 1.21526 0.95151 0.96027 0.82380 0.90758 1.22504 0.96323 1.01283 0.96164 1.22317 0.98230 0.97883 0.96615 1.22542 0.96173 0.97794 0.98735 1.22434 0.95804 0.97375 0.96707 0.89462 1.20678 0.88652 0.93321 0.93174 1.42674 1.34864 1.54901 1.07501 1.19023 1.06226 1.17352 0.93747 0.92405 1.25490 0.97737 0.99576 1.02674 1.69878 1.20765 1.35713 1.37066 0.85439 0.76643 0.79102 0.80805 1.20007 1.22636 1.17683 0.88637 0.93152 0.92646 0.89433 0.92885 0.87773 0.92315 0.78043 0.80459 0.82418 0.75434 0.91026 0.91452 0.90105 0.90585 0.91107 0.91465 0.94695 0.97010 0.79996 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.53 71.98 0.69 -2.17 16 2 C 0.07 1.47 3.11 30.59 0.10 1.56 16 3 C -0.15 -2.68 9.56 71.98 0.69 -1.99 16 4 O -0.29 -8.74 7.86 -66.38 -0.52 -9.26 16 5 C 0.35 9.88 7.47 85.13 0.64 10.51 16 6 N -0.56 -12.55 8.64 -308.01 -2.66 -15.21 16 7 C 0.17 2.61 11.17 84.71 0.95 3.56 16 8 C -0.21 -3.16 10.09 22.32 0.23 -2.94 16 9 C -0.01 -0.18 9.64 22.72 0.22 0.04 16 10 C -0.24 -6.46 5.90 -19.91 -0.12 -6.57 16 11 C 0.56 17.38 7.77 86.69 0.67 18.05 16 12 O -0.56 -21.03 14.85 16.82 0.25 -20.78 16 13 N -0.71 -18.86 4.29 -442.27 -1.90 -20.76 16 14 C 0.15 4.09 3.12 45.72 0.14 4.23 16 15 H 0.07 2.24 7.56 -2.39 -0.02 2.22 16 16 C -0.12 -2.74 6.59 31.32 0.21 -2.53 16 17 C -0.11 -2.17 6.83 31.67 0.22 -1.95 16 18 C -0.11 -2.75 6.19 31.88 0.20 -2.55 16 19 C -0.10 -2.90 2.85 -9.72 -0.03 -2.93 16 20 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 21 C 0.17 6.00 4.73 86.38 0.41 6.41 16 22 N -0.75 -33.76 5.30 -343.44 -1.82 -35.58 16 23 C -0.23 -12.93 10.47 84.03 0.88 -12.05 16 24 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 25 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 26 N -0.98 -62.26 13.97 21.65 0.30 -61.96 16 27 Si 0.95 44.52 27.73 68.60 1.90 46.43 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 30 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.87 6.98 -2.39 -0.02 1.85 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.16 2.63 6.52 -2.91 -0.02 2.61 16 41 H 0.41 9.61 4.66 -92.71 -0.43 9.17 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.51 7.92 -2.38 -0.02 1.49 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.70 7.97 -2.38 -0.02 1.68 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 1.17 6.41 -2.38 -0.02 1.16 16 49 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 50 H 0.37 15.66 5.50 -92.71 -0.51 15.15 16 51 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -77.06 407.60 2.04 -75.02 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.06 Total: 36.62 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.54 Total: 5.48 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -6.08 Total: -133.50 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.27 Total: -30.04 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Total: -77.06 2.04 -75.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667779586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.397 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds