Wall clock time and date at job start Wed Apr 1 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 O 1.42900 * 109.47249 * 119.99984 * 2 1 3 5 5 C 1.35926 * 116.99701 * 154.91639 * 4 2 1 6 6 C 1.38847 * 120.40259 * 185.33731 * 5 4 2 7 7 N 1.31883 * 120.99906 * 179.97438 * 6 5 4 8 8 C 1.31678 * 121.94142 * 359.97438 * 7 6 5 9 9 C 1.39524 * 120.69028 * 0.02562 * 8 7 6 10 10 C 1.47858 * 120.53033 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99948 * 319.85922 * 10 9 8 12 12 N 1.34772 * 120.00069 * 139.86718 * 10 9 8 13 13 C 1.46927 * 120.63193 * 354.13981 * 12 10 9 14 14 C 1.52754 * 109.01348 * 233.59057 * 13 12 10 15 15 C 1.53049 * 109.38150 * 305.58838 * 14 13 12 16 16 C 1.53042 * 109.53591 * 61.23950 * 15 14 13 17 17 H 1.08997 * 109.52616 * 58.60256 * 16 15 14 18 18 C 1.53004 * 109.49468 * 178.68201 * 16 15 14 19 19 N 1.46503 * 109.46894 * 184.83546 * 18 16 15 20 20 C 1.36937 * 119.99778 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00112 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00022 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00327 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99830 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46484 * 90.00742 * 24 22 20 26 26 H 1.48500 * 109.46909 * 210.00191 * 24 22 20 27 27 H 1.48497 * 109.47104 * 330.00634 * 24 22 20 28 28 C 1.46927 * 120.63025 * 174.43066 * 12 10 9 29 29 C 1.38843 * 120.40634 * 5.33880 * 5 4 2 30 30 H 1.09003 * 109.47045 * 299.99573 * 1 2 3 31 31 H 1.08996 * 109.47336 * 59.99680 * 1 2 3 32 32 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47045 * 240.00427 * 2 1 3 34 34 H 1.09007 * 109.46994 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47402 * 300.00280 * 3 2 1 36 36 H 1.08998 * 109.47234 * 60.00728 * 3 2 1 37 37 H 1.07996 * 119.50008 * 0.25623 * 6 5 4 38 38 H 1.07997 * 119.65619 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.58654 * 353.42707 * 13 12 10 40 40 H 1.09006 * 109.58505 * 113.84623 * 13 12 10 41 41 H 1.08999 * 109.56809 * 185.55813 * 14 13 12 42 42 H 1.09001 * 109.38978 * 65.51006 * 14 13 12 43 43 H 1.08995 * 109.45976 * 301.22201 * 15 14 13 44 44 H 1.08994 * 109.44975 * 181.25154 * 15 14 13 45 45 H 1.08993 * 109.47220 * 304.83906 * 18 16 15 46 46 H 1.09001 * 109.46892 * 64.83989 * 18 16 15 47 47 H 0.96994 * 120.00023 * 0.02562 * 19 18 16 48 48 H 0.97000 * 119.99826 * 179.97438 * 23 22 20 49 49 H 1.09011 * 109.58490 * 246.15089 * 28 12 10 50 50 H 1.08997 * 109.58822 * 6.43103 * 28 12 10 51 51 H 1.07995 * 120.87696 * 0.03859 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2462 -1.2263 1.0972 6 6 3.7346 -1.9911 2.1481 7 7 4.9356 -2.5332 2.0928 8 6 5.7226 -2.3780 1.0486 9 6 5.3080 -1.6242 -0.0498 10 6 6.1948 -1.4517 -1.2203 11 8 7.3863 -1.2728 -1.0589 12 7 5.6822 -1.4926 -2.4660 13 6 4.2699 -1.8344 -2.6835 14 6 4.1848 -2.9864 -3.6829 15 6 4.9443 -2.6104 -4.9574 16 6 6.4176 -2.3672 -4.6221 17 1 6.8425 -3.2656 -4.1746 18 6 7.1824 -2.0235 -5.9020 19 7 8.6110 -1.9042 -5.5999 20 6 9.4985 -1.5995 -6.5973 21 1 9.1453 -1.4467 -7.6064 22 6 10.8522 -1.4869 -6.3113 23 7 11.7052 -1.1936 -7.2697 24 14 11.4630 -1.7505 -4.5657 25 1 11.7944 -3.1846 -4.3686 26 1 12.6765 -0.9259 -4.3362 27 1 10.4037 -1.3506 -3.6049 28 6 6.5266 -1.2026 -3.6329 29 6 4.0397 -1.0330 -0.0256 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1200 -2.1481 3.0221 38 1 6.6993 -2.8390 1.0423 39 1 3.8177 -2.1375 -1.7392 40 1 3.7416 -0.9683 -3.0825 41 1 3.1405 -3.1823 -3.9263 42 1 4.6299 -3.8796 -3.2444 43 1 4.5141 -1.7035 -5.3822 44 1 4.8656 -3.4227 -5.6798 45 1 7.0314 -2.8125 -6.6385 46 1 6.8154 -1.0781 -6.3017 47 1 8.9282 -2.0410 -4.6936 48 1 12.6511 -1.1146 -7.0697 49 1 6.1862 -0.2840 -4.1110 50 1 7.5626 -1.0866 -3.3145 51 1 3.6873 -0.4426 -0.8584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690418697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:40 Heat of formation + Delta-G solvation = -22.923010 kcal Electronic energy + Delta-G solvation = -31406.212127 eV Core-core repulsion = 27306.371331 eV Total energy + Delta-G solvation = -4099.840796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51166 -40.13825 -38.87993 -37.69333 -35.27186 -33.88985 -33.49028 -32.41870 -31.83762 -30.61070 -30.19466 -27.88717 -26.36772 -25.92081 -24.62420 -23.86657 -22.98723 -21.63398 -21.37474 -20.71590 -19.78057 -18.26993 -17.77447 -17.44630 -17.26486 -16.72877 -16.19277 -16.00422 -15.31322 -14.93013 -14.73993 -14.71608 -14.61887 -14.21708 -13.97071 -13.91837 -13.58254 -13.51589 -13.16703 -13.06761 -12.99005 -12.81956 -12.70642 -12.61724 -12.49300 -12.37670 -11.72353 -11.59558 -11.48044 -11.37554 -11.28798 -10.96462 -10.74537 -10.56067 -10.51478 -10.34016 -10.08079 -10.06134 -9.68700 -9.54216 -8.91805 -8.87662 -8.72917 -7.21312 -5.74224 -3.10161 0.33266 0.76976 2.44367 2.58314 2.75312 3.36419 3.44819 3.51633 3.53801 3.90958 4.08243 4.17580 4.21815 4.31348 4.38157 4.45946 4.54980 4.60730 4.64353 4.71046 4.78306 4.94159 4.98713 5.00477 5.08787 5.13775 5.17945 5.20355 5.25240 5.40676 5.42702 5.50374 5.55098 5.56376 5.57629 5.60198 5.65437 5.74526 5.83182 5.92902 5.95594 5.96948 6.21689 6.27606 6.38880 6.62507 6.71512 6.72507 7.18600 7.49399 7.95144 8.00872 8.44619 9.23553 9.96396 10.15318 11.43882 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.002767 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.952090 B =10118.371629 C =11100.312323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.184 4.184 4 O -0.301 6.301 5 C 0.077 3.923 6 C 0.092 3.908 7 N -0.446 5.446 8 C 0.113 3.887 9 C -0.133 4.133 10 C 0.558 3.442 11 O -0.519 6.519 12 N -0.603 5.603 13 C 0.097 3.903 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.112 4.112 17 H 0.075 0.925 18 C 0.166 3.834 19 N -0.757 5.757 20 C -0.246 4.246 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.879 3.121 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.272 1.272 28 C 0.118 3.882 29 C -0.141 4.141 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.028 0.972 47 H 0.362 0.638 48 H 0.259 0.741 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.450 0.485 16.406 32.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.241 4.241 4 O -0.214 6.214 5 C 0.030 3.970 6 C -0.067 4.067 7 N -0.154 5.154 8 C -0.044 4.044 9 C -0.139 4.139 10 C 0.345 3.655 11 O -0.394 6.394 12 N -0.336 5.336 13 C -0.026 4.026 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.131 4.131 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.403 5.403 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.709 3.291 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.198 1.198 28 C -0.004 4.004 29 C -0.167 4.167 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.118 0.882 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.561 0.173 17.110 32.441 hybrid contribution 0.335 0.471 0.160 0.600 sum -27.227 0.644 17.270 32.248 Atomic orbital electron populations 1.21859 0.91824 1.03429 1.03424 1.22551 0.95920 0.92769 0.86969 1.22417 1.02215 0.95754 1.03713 1.86172 1.28216 1.67939 1.39053 1.20015 0.86171 0.95550 0.95309 1.22457 0.92742 0.93992 0.97483 1.67838 1.03453 1.18916 1.25155 1.22855 0.99326 0.95148 0.87105 1.20874 0.94649 1.01163 0.97178 1.18126 0.87374 0.77445 0.82595 1.90872 1.14956 1.48344 1.85274 1.48075 1.11134 1.68390 1.05969 1.21997 0.81992 0.98307 1.00322 1.21852 1.01011 0.98131 0.96253 1.21514 0.94610 1.02104 0.96750 1.21753 0.95671 0.98622 0.97092 0.90667 1.20607 0.84321 0.98411 0.92886 1.42773 1.02302 1.86827 1.08401 1.19027 0.87609 1.40178 0.90728 0.89229 1.24657 0.95822 1.01531 0.96940 1.69705 1.02264 1.55122 1.31115 0.86620 0.78605 0.77945 0.85918 1.21079 1.21667 1.19771 1.21821 0.96707 0.97552 0.84278 1.22012 0.93757 1.02068 0.98883 0.91239 0.90170 0.91426 0.90899 0.91911 0.90497 0.91043 0.81501 0.81408 0.89720 0.91220 0.90605 0.91366 0.91504 0.91109 0.95087 0.95399 0.80474 0.93064 0.90909 0.88171 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.56 37.16 0.36 -0.20 16 2 C 0.07 0.40 2.85 -26.73 -0.08 0.32 16 3 C -0.18 -0.97 9.19 37.16 0.34 -0.63 16 4 O -0.30 -2.30 9.81 -19.51 -0.19 -2.49 16 5 C 0.08 0.67 6.62 -39.13 -0.26 0.41 16 6 C 0.09 0.85 11.13 -17.30 -0.19 0.65 16 7 N -0.45 -4.98 10.34 -12.80 -0.13 -5.11 16 8 C 0.11 1.33 10.81 -17.14 -0.19 1.15 16 9 C -0.13 -1.55 5.13 -104.84 -0.54 -2.09 16 10 C 0.56 8.11 7.34 -12.33 -0.09 8.02 16 11 O -0.52 -9.84 16.36 5.32 0.09 -9.75 16 12 N -0.60 -7.65 2.98 -174.14 -0.52 -8.17 16 13 C 0.10 0.84 4.90 -3.94 -0.02 0.82 16 14 C -0.13 -1.15 6.06 -26.83 -0.16 -1.31 16 15 C -0.11 -1.18 5.17 -26.68 -0.14 -1.32 16 16 C -0.11 -1.64 2.38 -90.50 -0.21 -1.86 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.17 3.09 5.65 -4.04 -0.02 3.06 16 19 N -0.76 -18.21 5.18 -59.91 -0.31 -18.52 16 20 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 21 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.90 13.97 55.49 0.78 -29.13 16 24 Si 0.88 23.18 27.74 -169.99 -4.71 18.46 16 25 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.27 -6.97 6.52 56.52 0.37 -6.60 16 28 C 0.12 1.78 5.53 -3.71 -0.02 1.76 16 29 C -0.14 -1.28 5.68 -38.72 -0.22 -1.50 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.34 6.33 -51.93 -0.33 0.01 16 34 H 0.06 0.41 6.95 -51.92 -0.36 0.05 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.08 0.65 4.74 -51.93 -0.25 0.41 16 40 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.36 8.76 4.76 -40.82 -0.19 8.57 16 48 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 49 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 50 H 0.10 1.91 6.20 -51.93 -0.32 1.58 16 51 H 0.15 1.11 4.20 -52.49 -0.22 0.89 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -35.34 400.71 -8.69 -44.03 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.03 Total: 4.46 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.70 Total: 0.17 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.19 Total: -60.93 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.10 Total: -12.24 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.34 -8.69 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690418697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.109 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds