Wall clock time and date at job start Wed Apr 1 2020 04:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 O 1.42900 * 109.47249 * 119.99984 * 2 1 3 5 5 C 1.35926 * 116.99701 * 154.91639 * 4 2 1 6 6 C 1.38847 * 120.40259 * 185.33731 * 5 4 2 7 7 N 1.31883 * 120.99906 * 179.97438 * 6 5 4 8 8 C 1.31678 * 121.94142 * 359.97438 * 7 6 5 9 9 C 1.39524 * 120.69028 * 0.02562 * 8 7 6 10 10 C 1.47858 * 120.53033 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99948 * 319.85922 * 10 9 8 12 12 N 1.34772 * 120.00069 * 139.86718 * 10 9 8 13 13 C 1.46927 * 120.63193 * 354.13981 * 12 10 9 14 14 C 1.52754 * 109.01348 * 233.59057 * 13 12 10 15 15 C 1.53049 * 109.38150 * 305.58838 * 14 13 12 16 16 C 1.53042 * 109.53591 * 61.23950 * 15 14 13 17 17 H 1.08997 * 109.52616 * 58.60256 * 16 15 14 18 18 C 1.53004 * 109.49468 * 178.68201 * 16 15 14 19 19 N 1.46503 * 109.46894 * 184.83546 * 18 16 15 20 20 C 1.36937 * 119.99778 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00112 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00022 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00327 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99830 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46484 * 90.00742 * 24 22 20 26 26 H 1.48500 * 109.46909 * 210.00191 * 24 22 20 27 27 H 1.48497 * 109.47104 * 330.00634 * 24 22 20 28 28 C 1.46927 * 120.63025 * 174.43066 * 12 10 9 29 29 C 1.38843 * 120.40634 * 5.33880 * 5 4 2 30 30 H 1.09003 * 109.47045 * 299.99573 * 1 2 3 31 31 H 1.08996 * 109.47336 * 59.99680 * 1 2 3 32 32 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47045 * 240.00427 * 2 1 3 34 34 H 1.09007 * 109.46994 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47402 * 300.00280 * 3 2 1 36 36 H 1.08998 * 109.47234 * 60.00728 * 3 2 1 37 37 H 1.07996 * 119.50008 * 0.25623 * 6 5 4 38 38 H 1.07997 * 119.65619 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.58654 * 353.42707 * 13 12 10 40 40 H 1.09006 * 109.58505 * 113.84623 * 13 12 10 41 41 H 1.08999 * 109.56809 * 185.55813 * 14 13 12 42 42 H 1.09001 * 109.38978 * 65.51006 * 14 13 12 43 43 H 1.08995 * 109.45976 * 301.22201 * 15 14 13 44 44 H 1.08994 * 109.44975 * 181.25154 * 15 14 13 45 45 H 1.08993 * 109.47220 * 304.83906 * 18 16 15 46 46 H 1.09001 * 109.46892 * 64.83989 * 18 16 15 47 47 H 0.96994 * 120.00023 * 0.02562 * 19 18 16 48 48 H 0.97000 * 119.99826 * 179.97438 * 23 22 20 49 49 H 1.09011 * 109.58490 * 246.15089 * 28 12 10 50 50 H 1.08997 * 109.58822 * 6.43103 * 28 12 10 51 51 H 1.07995 * 120.87696 * 0.03859 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2462 -1.2263 1.0972 6 6 3.7346 -1.9911 2.1481 7 7 4.9356 -2.5332 2.0928 8 6 5.7226 -2.3780 1.0486 9 6 5.3080 -1.6242 -0.0498 10 6 6.1948 -1.4517 -1.2203 11 8 7.3863 -1.2728 -1.0589 12 7 5.6822 -1.4926 -2.4660 13 6 4.2699 -1.8344 -2.6835 14 6 4.1848 -2.9864 -3.6829 15 6 4.9443 -2.6104 -4.9574 16 6 6.4176 -2.3672 -4.6221 17 1 6.8425 -3.2656 -4.1746 18 6 7.1824 -2.0235 -5.9020 19 7 8.6110 -1.9042 -5.5999 20 6 9.4985 -1.5995 -6.5973 21 1 9.1453 -1.4467 -7.6064 22 6 10.8522 -1.4869 -6.3113 23 7 11.7052 -1.1936 -7.2697 24 14 11.4630 -1.7505 -4.5657 25 1 11.7944 -3.1846 -4.3686 26 1 12.6765 -0.9259 -4.3362 27 1 10.4037 -1.3506 -3.6049 28 6 6.5266 -1.2026 -3.6329 29 6 4.0397 -1.0330 -0.0256 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.1200 -2.1481 3.0221 38 1 6.6993 -2.8390 1.0423 39 1 3.8177 -2.1375 -1.7392 40 1 3.7416 -0.9683 -3.0825 41 1 3.1405 -3.1823 -3.9263 42 1 4.6299 -3.8796 -3.2444 43 1 4.5141 -1.7035 -5.3822 44 1 4.8656 -3.4227 -5.6798 45 1 7.0314 -2.8125 -6.6385 46 1 6.8154 -1.0781 -6.3017 47 1 8.9282 -2.0410 -4.6936 48 1 12.6511 -1.1146 -7.0697 49 1 6.1862 -0.2840 -4.1110 50 1 7.5626 -1.0866 -3.3145 51 1 3.6873 -0.4426 -0.8584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690418697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:39 Heat of formation + Delta-G solvation = -46.830328 kcal Electronic energy + Delta-G solvation = -31407.248826 eV Core-core repulsion = 27306.371331 eV Total energy + Delta-G solvation = -4100.877495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.32091 -41.04280 -39.60241 -38.82269 -36.85687 -34.85988 -34.31578 -33.57068 -33.22139 -31.77459 -31.31361 -28.21604 -27.65906 -27.10826 -25.38565 -24.78644 -24.48562 -22.69331 -22.19066 -21.82180 -20.73125 -19.70727 -18.97848 -18.49912 -17.97417 -17.57765 -17.23273 -16.69993 -16.62430 -16.27109 -15.96532 -15.71257 -15.34074 -15.33181 -15.13760 -14.94512 -14.67754 -14.45984 -14.23971 -14.14479 -13.99321 -13.86240 -13.52813 -13.37866 -13.34233 -13.12721 -13.02134 -12.86359 -12.73509 -12.29010 -12.12760 -12.01322 -11.92675 -11.87546 -11.76230 -11.66331 -11.49864 -11.44117 -11.04302 -10.88020 -10.60820 -9.81869 -9.56842 -9.32740 -8.07876 -5.39455 -0.47774 0.01733 1.31925 1.35382 1.41625 1.45336 1.75108 1.99304 2.41794 2.55229 3.08366 3.24414 3.38797 3.49378 3.50496 3.64319 3.74556 3.77318 3.83962 3.86276 3.95758 4.01344 4.05183 4.12763 4.20729 4.30077 4.36074 4.50326 4.65826 4.67987 4.70899 4.71786 4.74834 4.79031 4.81977 4.82926 4.86194 4.91944 5.01039 5.06017 5.16469 5.21763 5.23858 5.29796 5.31758 5.37939 5.45820 5.72392 6.12247 6.17388 6.19743 6.71768 6.88430 7.03453 7.81204 7.97108 9.13642 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.002767 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.952090 B =10118.371629 C =11100.312323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 C -0.184 4.184 4 O -0.303 6.303 5 C 0.088 3.912 6 C 0.093 3.907 7 N -0.461 5.461 8 C 0.099 3.901 9 C -0.142 4.142 10 C 0.554 3.446 11 O -0.577 6.577 12 N -0.596 5.596 13 C 0.089 3.911 14 C -0.128 4.128 15 C -0.106 4.106 16 C -0.100 4.100 17 H 0.058 0.942 18 C 0.161 3.839 19 N -0.763 5.763 20 C -0.228 4.228 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.979 5.979 24 Si 0.942 3.058 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.266 1.266 28 C 0.121 3.879 29 C -0.130 4.130 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.192 0.808 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.361 0.639 48 H 0.258 0.742 49 H 0.085 0.915 50 H 0.055 0.945 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.802 0.500 17.385 37.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 C -0.241 4.241 4 O -0.216 6.216 5 C 0.039 3.961 6 C -0.066 4.066 7 N -0.169 5.169 8 C -0.058 4.058 9 C -0.147 4.147 10 C 0.343 3.657 11 O -0.457 6.457 12 N -0.327 5.327 13 C -0.032 4.032 14 C -0.166 4.166 15 C -0.144 4.144 16 C -0.120 4.120 17 H 0.076 0.924 18 C 0.034 3.966 19 N -0.409 5.409 20 C -0.359 4.359 21 H 0.084 0.916 22 C -0.248 4.248 23 N -0.630 5.630 24 Si 0.770 3.230 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.192 1.192 28 C -0.002 4.002 29 C -0.156 4.156 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.209 0.791 38 H 0.175 0.825 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.194 0.806 48 H 0.067 0.933 49 H 0.103 0.897 50 H 0.074 0.926 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -32.011 0.169 18.085 36.767 hybrid contribution 1.493 0.505 -0.187 1.587 sum -30.519 0.674 17.898 35.387 Atomic orbital electron populations 1.21886 0.90442 1.03778 1.04181 1.22856 0.96980 0.92598 0.86607 1.22435 1.01240 0.95982 1.04477 1.86202 1.27251 1.67736 1.40426 1.19966 0.86554 0.94851 0.94692 1.22898 0.92167 0.93127 0.98405 1.67848 1.04342 1.19782 1.24922 1.22755 0.99385 0.95959 0.87715 1.20583 0.95387 1.02710 0.96054 1.18589 0.86990 0.76439 0.83731 1.90834 1.17543 1.51200 1.86166 1.48130 1.12597 1.67349 1.04657 1.22386 0.79499 0.99797 1.01471 1.21852 1.02717 0.97326 0.94713 1.21509 0.91337 1.03317 0.98218 1.21623 0.98194 0.97479 0.94673 0.92388 1.20847 0.81756 0.98713 0.95244 1.42886 1.04155 1.86496 1.07314 1.19077 0.88315 1.37823 0.90725 0.91622 1.25332 0.96291 1.02728 1.00462 1.69845 1.02490 1.57550 1.33148 0.85610 0.77861 0.77851 0.81644 1.20538 1.21914 1.19185 1.21590 0.95045 0.98333 0.85198 1.22107 0.92488 1.01329 0.99681 0.91588 0.88369 0.91271 0.89498 0.93353 0.88759 0.91402 0.79084 0.82543 0.88325 0.88083 0.86807 0.92603 0.89737 0.90419 0.94817 0.94668 0.80597 0.93289 0.89675 0.92636 0.81386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.56 71.98 0.69 0.13 16 2 C 0.06 0.46 2.85 30.59 0.09 0.54 16 3 C -0.18 -1.37 9.19 71.98 0.66 -0.71 16 4 O -0.30 -3.63 9.81 -92.71 -0.91 -4.54 16 5 C 0.09 1.29 6.62 22.56 0.15 1.44 16 6 C 0.09 1.52 11.13 84.83 0.94 2.46 16 7 N -0.46 -9.93 10.34 -194.40 -2.01 -11.94 16 8 C 0.10 2.35 10.81 85.03 0.92 3.27 16 9 C -0.14 -3.21 5.13 -20.01 -0.10 -3.31 16 10 C 0.55 16.20 7.34 86.79 0.64 16.83 16 11 O -0.58 -23.02 16.36 -3.88 -0.06 -23.08 16 12 N -0.60 -14.33 2.98 -823.13 -2.45 -16.79 16 13 C 0.09 1.20 4.90 86.22 0.42 1.63 16 14 C -0.13 -1.66 6.06 30.53 0.19 -1.48 16 15 C -0.11 -1.88 5.17 30.62 0.16 -1.72 16 16 C -0.10 -2.82 2.38 -10.71 -0.03 -2.84 16 17 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 18 C 0.16 5.88 5.65 86.38 0.49 6.37 16 19 N -0.76 -37.04 5.18 -343.44 -1.78 -38.82 16 20 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 21 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 22 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 23 N -0.98 -64.37 13.97 21.65 0.30 -64.06 16 24 Si 0.94 49.38 27.74 68.60 1.90 51.28 16 25 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.29 -15.35 7.11 99.48 0.71 -14.64 16 27 H -0.27 -13.58 6.52 99.48 0.65 -12.93 16 28 C 0.12 3.59 5.53 86.36 0.48 4.07 16 29 C -0.13 -2.03 5.68 22.83 0.13 -1.90 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.10 0.04 8.14 -2.39 -0.02 0.03 16 32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 0.38 6.33 -2.39 -0.02 0.37 16 34 H 0.05 0.51 6.95 -2.38 -0.02 0.49 16 35 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 39 H 0.10 1.12 4.74 -2.39 -0.01 1.10 16 40 H 0.10 0.82 8.13 -2.38 -0.02 0.80 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.36 17.72 4.76 -92.71 -0.44 17.28 16 48 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 49 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 50 H 0.06 2.18 6.20 -2.39 -0.01 2.16 16 51 H 0.17 1.88 4.20 -2.91 -0.01 1.87 16 Total: -1.00 -80.74 400.71 2.60 -78.15 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.44 Total: 20.50 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 7.17 Total: 9.30 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -5.94 Total: -131.61 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.97 Total: -27.62 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.90 Total: 51.28 kcal Total: -80.74 2.60 -78.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690418697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.317 kcal (2) G-P(sol) polarization free energy of solvation -80.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds