Wall clock time and date at job start Wed Apr 1 2020 04:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47180 * 2 1 4 4 O 1.42901 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.35650 * 116.99905 * 180.02562 * 4 3 2 6 6 C 1.39341 * 120.54079 * 0.02562 * 5 4 3 7 7 C 1.38302 * 118.43600 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.44939 * 359.97438 * 7 6 5 9 9 N 1.31375 * 121.06511 * 359.72258 * 8 7 6 10 10 C 1.32859 * 121.69350 * 0.56752 * 9 8 7 11 11 C 1.47836 * 119.78154 * 179.70673 * 10 9 8 12 12 O 1.21556 * 119.99872 * 179.72240 * 11 10 9 13 13 N 1.34770 * 120.00149 * 359.73382 * 11 10 9 14 14 C 1.47028 * 125.64853 * 359.96702 * 13 11 10 15 15 C 1.54323 * 107.27065 * 178.96421 * 14 13 11 16 16 C 1.55278 * 103.00828 * 337.88911 * 15 14 13 17 17 H 1.09005 * 110.95435 * 277.32962 * 16 15 14 18 18 C 1.52995 * 111.09934 * 153.45032 * 16 15 14 19 19 N 1.46503 * 109.47497 * 181.35849 * 18 16 15 20 20 C 1.46503 * 119.99913 * 89.99280 * 19 18 16 21 21 C 1.36936 * 120.00241 * 270.00110 * 19 18 16 22 22 H 1.08006 * 119.99495 * 23.31475 * 21 19 18 23 23 C 1.38807 * 120.00151 * 203.31117 * 21 19 18 24 24 N 1.31614 * 119.99920 * 14.42128 * 23 21 19 25 25 Si 1.86802 * 119.99919 * 194.42100 * 23 21 19 26 26 H 1.48493 * 109.47270 * 60.00253 * 25 23 21 27 27 H 1.48500 * 109.46973 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47004 * 299.99839 * 25 23 21 29 29 C 1.47424 * 125.64934 * 179.97438 * 13 11 10 30 30 H 1.09000 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46936 * 299.99947 * 1 2 3 32 32 H 1.09007 * 109.47035 * 59.99610 * 1 2 3 33 33 H 1.08997 * 109.47081 * 240.00210 * 2 1 3 34 34 H 1.08998 * 109.46762 * 120.00327 * 2 1 3 35 35 H 1.09006 * 109.47143 * 60.00179 * 3 2 1 36 36 H 1.08998 * 109.47540 * 299.99851 * 3 2 1 37 37 H 1.07999 * 120.78274 * 359.97438 * 6 5 4 38 38 H 1.08008 * 120.27621 * 180.02562 * 7 6 5 39 39 H 1.08000 * 119.46926 * 179.97438 * 8 7 6 40 40 H 1.08992 * 109.88185 * 298.38269 * 14 13 11 41 41 H 1.09008 * 109.87766 * 59.54948 * 14 13 11 42 42 H 1.09003 * 110.72000 * 96.17362 * 15 14 13 43 43 H 1.09003 * 110.72089 * 219.27013 * 15 14 13 44 44 H 1.09005 * 109.47376 * 301.35922 * 18 16 15 45 45 H 1.09001 * 109.47488 * 61.35689 * 18 16 15 46 46 H 1.08995 * 109.46746 * 95.19062 * 20 19 18 47 47 H 1.08994 * 109.46959 * 215.19115 * 20 19 18 48 48 H 1.08999 * 109.47396 * 335.19277 * 20 19 18 49 49 H 0.97005 * 119.99902 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.36511 * 322.93976 * 29 13 11 51 51 H 1.09001 * 110.36630 * 85.15869 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0849 2.6511 -0.0001 6 6 3.3370 3.8268 0.0014 7 6 4.0097 5.0352 0.0024 8 6 5.3974 5.0435 0.0023 9 7 6.0820 3.9223 0.0068 10 6 5.4810 2.7374 0.0004 11 6 6.2932 1.5021 -0.0008 12 8 5.7474 0.4160 -0.0015 13 7 7.6386 1.5802 -0.0007 14 6 8.4248 2.8226 -0.0003 15 6 9.9149 2.4219 0.0263 16 6 9.8795 0.9829 0.6087 17 1 9.8257 1.0042 1.6972 18 6 11.0856 0.1681 0.1374 19 7 10.9999 -1.1899 0.6802 20 6 10.3071 -2.2377 -0.0738 21 6 11.5671 -1.4800 1.8923 22 1 11.7371 -0.6921 2.6113 23 6 11.9236 -2.7864 2.1970 24 7 11.9861 -3.6910 1.2430 25 14 12.3146 -3.2607 3.9610 26 1 11.1290 -3.0035 4.8171 27 1 12.6648 -4.7026 4.0198 28 1 13.4617 -2.4530 4.4480 29 6 8.5658 0.4340 -0.0012 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 2.2575 3.7952 0.0019 38 1 3.4596 5.9647 0.0040 39 1 5.9230 5.9870 0.0026 40 1 8.2114 3.3967 -0.9018 41 1 8.1840 3.4133 0.8836 42 1 10.3312 2.4181 -0.9811 43 1 10.4825 3.0899 0.6741 44 1 11.0915 0.1244 -0.9518 45 1 12.0031 0.6418 0.4868 46 1 11.0313 -2.8013 -0.6619 47 1 9.8004 -2.9093 0.6192 48 1 9.5742 -1.7821 -0.7396 49 1 12.2356 -4.6039 1.4559 50 1 8.1704 -0.3740 0.6142 51 1 8.7373 0.0853 -1.0196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691979373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:06 Heat of formation + Delta-G solvation = -5.687575 kcal Electronic energy + Delta-G solvation = -30914.986913 eV Core-core repulsion = 26815.893501 eV Total energy + Delta-G solvation = -4099.093412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.15102 -39.39624 -38.53392 -37.29963 -35.21603 -34.29880 -32.89790 -31.92572 -30.82597 -30.38257 -28.52211 -27.07411 -26.41625 -25.55136 -24.53490 -23.28233 -22.70966 -21.70583 -21.01334 -19.92916 -19.59147 -18.34920 -17.51344 -17.00544 -16.70322 -16.50365 -15.85823 -15.60746 -15.14648 -14.87180 -14.73272 -14.55783 -14.16821 -13.99356 -13.55817 -13.42608 -13.33075 -13.09276 -12.84667 -12.67490 -12.46118 -12.40195 -12.20447 -12.08238 -11.93800 -11.65346 -11.34278 -11.30645 -11.01090 -10.84640 -10.83995 -10.64290 -10.45256 -10.21727 -10.11567 -10.08234 -9.93447 -9.79359 -9.73664 -9.50497 -8.74699 -8.44695 -8.20764 -6.63542 -5.62912 -3.09715 0.45024 0.92788 2.75052 2.82444 3.16304 3.44971 3.50473 3.51990 3.72932 4.04008 4.24010 4.34713 4.50731 4.53263 4.57184 4.65041 4.78780 4.81919 4.97553 5.01390 5.06620 5.10846 5.23353 5.27405 5.33511 5.53236 5.56110 5.61878 5.63635 5.67386 5.73593 5.82315 5.86919 5.94022 6.07370 6.11611 6.15774 6.31325 6.32489 6.46179 6.53207 6.72398 6.81330 6.89430 6.96359 6.99933 7.47797 7.50838 7.82396 7.83121 7.89569 8.42425 8.49725 9.33013 9.97229 10.46525 11.41473 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.002603 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.771954 B =10755.798237 C =12347.157982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.269 6.269 5 C 0.140 3.860 6 C -0.179 4.179 7 C -0.110 4.110 8 C 0.052 3.948 9 N -0.413 5.413 10 C 0.052 3.948 11 C 0.578 3.422 12 O -0.518 6.518 13 N -0.601 5.601 14 C 0.121 3.879 15 C -0.134 4.134 16 C -0.117 4.117 17 H 0.081 0.919 18 C 0.163 3.837 19 N -0.601 5.601 20 C 0.160 3.840 21 C -0.254 4.254 22 H 0.066 0.934 23 C 0.002 3.998 24 N -0.906 5.906 25 Si 0.902 3.098 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.284 1.284 29 C 0.121 3.879 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.030 0.970 47 H 0.038 0.962 48 H 0.002 0.998 49 H 0.252 0.748 50 H 0.080 0.920 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.012 19.647 -5.101 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.089 3.911 6 C -0.205 4.205 7 C -0.130 4.130 8 C -0.108 4.108 9 N -0.125 5.125 10 C -0.088 4.088 11 C 0.364 3.636 12 O -0.394 6.394 13 N -0.334 5.334 14 C -0.002 4.002 15 C -0.173 4.173 16 C -0.139 4.139 17 H 0.099 0.901 18 C 0.035 3.965 19 N -0.324 5.324 20 C 0.015 3.985 21 C -0.383 4.383 22 H 0.084 0.916 23 C -0.197 4.197 24 N -0.551 5.551 25 Si 0.732 3.268 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.210 1.210 29 C 0.000 4.000 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.182 0.818 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.020 0.980 49 H 0.062 0.938 50 H 0.098 0.902 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.353 18.581 -5.099 28.026 hybrid contribution -0.991 0.045 1.009 1.415 sum -21.344 18.625 -4.089 28.621 Atomic orbital electron populations 1.21694 0.94276 1.02672 1.01912 1.21465 0.95670 0.94441 1.04567 1.23040 0.78639 0.99660 1.01126 1.86439 1.20787 1.24565 1.86110 1.20012 0.92241 0.85732 0.93151 1.21733 1.00986 0.91854 1.05942 1.22186 0.95842 0.98295 0.96685 1.22754 0.91352 0.96583 1.00142 1.67939 1.39242 0.97331 1.07972 1.20750 0.88472 0.92999 1.06533 1.17228 0.80873 0.87216 0.78266 1.90850 1.70813 1.27617 1.50074 1.48429 1.04359 1.09532 1.71092 1.22024 0.90059 0.86040 1.02035 1.22801 0.94957 0.97731 1.01796 1.23213 0.96358 0.93508 1.00866 0.90084 1.20655 0.93891 0.86282 0.95653 1.43881 1.62937 1.04453 1.21088 1.20838 0.93315 0.90201 0.94148 1.19106 1.34609 0.93374 0.91244 0.91602 1.25003 0.99923 0.97324 0.97403 1.70064 1.51965 1.02869 1.30230 0.86377 0.78175 0.77224 0.85010 1.21150 1.21723 1.21002 1.22362 0.88384 0.88391 1.00859 0.91567 0.92485 0.92511 0.90408 0.90366 0.91974 0.91998 0.83823 0.84112 0.81848 0.91430 0.91187 0.90990 0.90472 0.94390 0.92919 0.95168 0.94356 0.97982 0.93794 0.90164 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.24 16 3 C 0.05 0.45 4.76 37.16 0.18 0.63 16 4 O -0.27 -3.71 8.20 -40.60 -0.33 -4.04 16 5 C 0.14 1.79 6.71 -38.56 -0.26 1.54 16 6 C -0.18 -1.55 9.13 -39.15 -0.36 -1.91 16 7 C -0.11 -0.78 10.10 -39.36 -0.40 -1.18 16 8 C 0.05 0.45 11.17 -17.55 -0.20 0.25 16 9 N -0.41 -5.09 6.84 -9.71 -0.07 -5.16 16 10 C 0.05 0.76 6.73 -82.88 -0.56 0.20 16 11 C 0.58 10.50 7.83 -12.34 -0.10 10.40 16 12 O -0.52 -11.02 15.39 -16.63 -0.26 -11.28 16 13 N -0.60 -10.32 3.33 -171.65 -0.57 -10.89 16 14 C 0.12 1.68 5.40 -3.06 -0.02 1.67 16 15 C -0.13 -1.83 6.43 -24.83 -0.16 -1.98 16 16 C -0.12 -2.08 3.30 -88.42 -0.29 -2.37 16 17 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 18 C 0.16 3.32 5.17 -4.04 -0.02 3.30 16 19 N -0.60 -15.32 2.84 -181.12 -0.51 -15.83 16 20 C 0.16 4.07 8.61 59.85 0.52 4.59 16 21 C -0.25 -7.08 9.64 -15.06 -0.15 -7.23 16 22 H 0.07 1.79 7.87 -52.48 -0.41 1.38 16 23 C 0.00 0.05 5.07 -17.43 -0.09 -0.04 16 24 N -0.91 -27.18 10.81 55.49 0.60 -26.58 16 25 Si 0.90 22.46 29.58 -169.99 -5.03 17.43 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.12 2.27 4.95 -2.54 -0.01 2.26 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.45 7.70 -51.93 -0.40 0.05 16 36 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 37 H 0.14 0.84 6.46 -52.49 -0.34 0.50 16 38 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 41 H 0.07 0.95 7.40 -51.92 -0.38 0.56 16 42 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 45 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 46 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 47 H 0.04 1.06 7.40 -51.93 -0.38 0.67 16 48 H 0.00 0.04 6.19 -51.93 -0.32 -0.28 16 49 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.08 1.74 8.04 -51.93 -0.42 1.32 16 51 H 0.06 1.21 7.19 -51.93 -0.37 0.84 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -34.79 405.88 -10.16 -44.95 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.40 Total: -3.09 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.71 Total: 8.38 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.55 Total: -58.46 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.59 Total: -15.32 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.79 -10.16 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691979373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.258 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds