Wall clock time and date at job start Wed Apr 1 2020 04:57:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.47180 * 2 1
4 4 O 1.42901 * 109.47048 * 180.02562 * 3 2 1
5 5 C 1.35650 * 116.99905 * 180.02562 * 4 3 2
6 6 C 1.39341 * 120.54079 * 0.02562 * 5 4 3
7 7 C 1.38302 * 118.43600 * 179.97438 * 6 5 4
8 8 C 1.38763 * 119.44939 * 359.97438 * 7 6 5
9 9 N 1.31375 * 121.06511 * 359.72258 * 8 7 6
10 10 C 1.32859 * 121.69350 * 0.56752 * 9 8 7
11 11 C 1.47836 * 119.78154 * 179.70673 * 10 9 8
12 12 O 1.21556 * 119.99872 * 179.72240 * 11 10 9
13 13 N 1.34770 * 120.00149 * 359.73382 * 11 10 9
14 14 C 1.47028 * 125.64853 * 359.96702 * 13 11 10
15 15 C 1.54323 * 107.27065 * 178.96421 * 14 13 11
16 16 C 1.55278 * 103.00828 * 337.88911 * 15 14 13
17 17 H 1.09005 * 110.95435 * 277.32962 * 16 15 14
18 18 C 1.52995 * 111.09934 * 153.45032 * 16 15 14
19 19 N 1.46503 * 109.47497 * 181.35849 * 18 16 15
20 20 C 1.46503 * 119.99913 * 89.99280 * 19 18 16
21 21 C 1.36936 * 120.00241 * 270.00110 * 19 18 16
22 22 H 1.08006 * 119.99495 * 23.31475 * 21 19 18
23 23 C 1.38807 * 120.00151 * 203.31117 * 21 19 18
24 24 N 1.31614 * 119.99920 * 14.42128 * 23 21 19
25 25 Si 1.86802 * 119.99919 * 194.42100 * 23 21 19
26 26 H 1.48493 * 109.47270 * 60.00253 * 25 23 21
27 27 H 1.48500 * 109.46973 * 180.02562 * 25 23 21
28 28 H 1.48505 * 109.47004 * 299.99839 * 25 23 21
29 29 C 1.47424 * 125.64934 * 179.97438 * 13 11 10
30 30 H 1.09000 * 109.47710 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.46936 * 299.99947 * 1 2 3
32 32 H 1.09007 * 109.47035 * 59.99610 * 1 2 3
33 33 H 1.08997 * 109.47081 * 240.00210 * 2 1 3
34 34 H 1.08998 * 109.46762 * 120.00327 * 2 1 3
35 35 H 1.09006 * 109.47143 * 60.00179 * 3 2 1
36 36 H 1.08998 * 109.47540 * 299.99851 * 3 2 1
37 37 H 1.07999 * 120.78274 * 359.97438 * 6 5 4
38 38 H 1.08008 * 120.27621 * 180.02562 * 7 6 5
39 39 H 1.08000 * 119.46926 * 179.97438 * 8 7 6
40 40 H 1.08992 * 109.88185 * 298.38269 * 14 13 11
41 41 H 1.09008 * 109.87766 * 59.54948 * 14 13 11
42 42 H 1.09003 * 110.72000 * 96.17362 * 15 14 13
43 43 H 1.09003 * 110.72089 * 219.27013 * 15 14 13
44 44 H 1.09005 * 109.47376 * 301.35922 * 18 16 15
45 45 H 1.09001 * 109.47488 * 61.35689 * 18 16 15
46 46 H 1.08995 * 109.46746 * 95.19062 * 20 19 18
47 47 H 1.08994 * 109.46959 * 215.19115 * 20 19 18
48 48 H 1.08999 * 109.47396 * 335.19277 * 20 19 18
49 49 H 0.97005 * 119.99902 * 179.97438 * 24 23 21
50 50 H 1.08997 * 110.36511 * 322.93976 * 29 13 11
51 51 H 1.09001 * 110.36630 * 85.15869 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4424 -0.0006
5 6 4.0849 2.6511 -0.0001
6 6 3.3370 3.8268 0.0014
7 6 4.0097 5.0352 0.0024
8 6 5.3974 5.0435 0.0023
9 7 6.0820 3.9223 0.0068
10 6 5.4810 2.7374 0.0004
11 6 6.2932 1.5021 -0.0008
12 8 5.7474 0.4160 -0.0015
13 7 7.6386 1.5802 -0.0007
14 6 8.4248 2.8226 -0.0003
15 6 9.9149 2.4219 0.0263
16 6 9.8795 0.9829 0.6087
17 1 9.8257 1.0042 1.6972
18 6 11.0856 0.1681 0.1374
19 7 10.9999 -1.1899 0.6802
20 6 10.3071 -2.2377 -0.0738
21 6 11.5671 -1.4800 1.8923
22 1 11.7371 -0.6921 2.6113
23 6 11.9236 -2.7864 2.1970
24 7 11.9861 -3.6910 1.2430
25 14 12.3146 -3.2607 3.9610
26 1 11.1290 -3.0035 4.8171
27 1 12.6648 -4.7026 4.0198
28 1 13.4617 -2.4530 4.4480
29 6 8.5658 0.4340 -0.0012
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9564 -0.8900
37 1 2.2575 3.7952 0.0019
38 1 3.4596 5.9647 0.0040
39 1 5.9230 5.9870 0.0026
40 1 8.2114 3.3967 -0.9018
41 1 8.1840 3.4133 0.8836
42 1 10.3312 2.4181 -0.9811
43 1 10.4825 3.0899 0.6741
44 1 11.0915 0.1244 -0.9518
45 1 12.0031 0.6418 0.4868
46 1 11.0313 -2.8013 -0.6619
47 1 9.8004 -2.9093 0.6192
48 1 9.5742 -1.7821 -0.7396
49 1 12.2356 -4.6039 1.4559
50 1 8.1704 -0.3740 0.6142
51 1 8.7373 0.0853 -1.0196
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691979373.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:06
Heat of formation + Delta-G solvation = -5.687575 kcal
Electronic energy + Delta-G solvation = -30914.986913 eV
Core-core repulsion = 26815.893501 eV
Total energy + Delta-G solvation = -4099.093412 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.15102 -39.39624 -38.53392 -37.29963 -35.21603 -34.29880 -32.89790 -31.92572
-30.82597 -30.38257 -28.52211 -27.07411 -26.41625 -25.55136 -24.53490 -23.28233
-22.70966 -21.70583 -21.01334 -19.92916 -19.59147 -18.34920 -17.51344 -17.00544
-16.70322 -16.50365 -15.85823 -15.60746 -15.14648 -14.87180 -14.73272 -14.55783
-14.16821 -13.99356 -13.55817 -13.42608 -13.33075 -13.09276 -12.84667 -12.67490
-12.46118 -12.40195 -12.20447 -12.08238 -11.93800 -11.65346 -11.34278 -11.30645
-11.01090 -10.84640 -10.83995 -10.64290 -10.45256 -10.21727 -10.11567 -10.08234
-9.93447 -9.79359 -9.73664 -9.50497 -8.74699 -8.44695 -8.20764 -6.63542
-5.62912 -3.09715 0.45024 0.92788 2.75052 2.82444 3.16304 3.44971
3.50473 3.51990 3.72932 4.04008 4.24010 4.34713 4.50731 4.53263
4.57184 4.65041 4.78780 4.81919 4.97553 5.01390 5.06620 5.10846
5.23353 5.27405 5.33511 5.53236 5.56110 5.61878 5.63635 5.67386
5.73593 5.82315 5.86919 5.94022 6.07370 6.11611 6.15774 6.31325
6.32489 6.46179 6.53207 6.72398 6.81330 6.89430 6.96359 6.99933
7.47797 7.50838 7.82396 7.83121 7.89569 8.42425 8.49725 9.33013
9.97229 10.46525 11.41473
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011724 B = 0.002603 C = 0.002267
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2387.771954 B =10755.798237 C =12347.157982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.124 4.124
3 C 0.051 3.949
4 O -0.269 6.269
5 C 0.140 3.860
6 C -0.179 4.179
7 C -0.110 4.110
8 C 0.052 3.948
9 N -0.413 5.413
10 C 0.052 3.948
11 C 0.578 3.422
12 O -0.518 6.518
13 N -0.601 5.601
14 C 0.121 3.879
15 C -0.134 4.134
16 C -0.117 4.117
17 H 0.081 0.919
18 C 0.163 3.837
19 N -0.601 5.601
20 C 0.160 3.840
21 C -0.254 4.254
22 H 0.066 0.934
23 C 0.002 3.998
24 N -0.906 5.906
25 Si 0.902 3.098
26 H -0.285 1.285
27 H -0.291 1.291
28 H -0.284 1.284
29 C 0.121 3.879
30 H 0.065 0.935
31 H 0.056 0.944
32 H 0.056 0.944
33 H 0.077 0.923
34 H 0.078 0.922
35 H 0.062 0.938
36 H 0.062 0.938
37 H 0.144 0.856
38 H 0.141 0.859
39 H 0.164 0.836
40 H 0.067 0.933
41 H 0.070 0.930
42 H 0.071 0.929
43 H 0.077 0.923
44 H 0.038 0.962
45 H 0.052 0.948
46 H 0.030 0.970
47 H 0.038 0.962
48 H 0.002 0.998
49 H 0.252 0.748
50 H 0.080 0.920
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.012 19.647 -5.101 29.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.161 4.161
3 C -0.025 4.025
4 O -0.179 6.179
5 C 0.089 3.911
6 C -0.205 4.205
7 C -0.130 4.130
8 C -0.108 4.108
9 N -0.125 5.125
10 C -0.088 4.088
11 C 0.364 3.636
12 O -0.394 6.394
13 N -0.334 5.334
14 C -0.002 4.002
15 C -0.173 4.173
16 C -0.139 4.139
17 H 0.099 0.901
18 C 0.035 3.965
19 N -0.324 5.324
20 C 0.015 3.985
21 C -0.383 4.383
22 H 0.084 0.916
23 C -0.197 4.197
24 N -0.551 5.551
25 Si 0.732 3.268
26 H -0.211 1.211
27 H -0.217 1.217
28 H -0.210 1.210
29 C 0.000 4.000
30 H 0.084 0.916
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.096 0.904
34 H 0.096 0.904
35 H 0.080 0.920
36 H 0.080 0.920
37 H 0.162 0.838
38 H 0.159 0.841
39 H 0.182 0.818
40 H 0.086 0.914
41 H 0.088 0.912
42 H 0.090 0.910
43 H 0.095 0.905
44 H 0.056 0.944
45 H 0.071 0.929
46 H 0.048 0.952
47 H 0.056 0.944
48 H 0.020 0.980
49 H 0.062 0.938
50 H 0.098 0.902
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -20.353 18.581 -5.099 28.026
hybrid contribution -0.991 0.045 1.009 1.415
sum -21.344 18.625 -4.089 28.621
Atomic orbital electron populations
1.21694 0.94276 1.02672 1.01912 1.21465 0.95670 0.94441 1.04567
1.23040 0.78639 0.99660 1.01126 1.86439 1.20787 1.24565 1.86110
1.20012 0.92241 0.85732 0.93151 1.21733 1.00986 0.91854 1.05942
1.22186 0.95842 0.98295 0.96685 1.22754 0.91352 0.96583 1.00142
1.67939 1.39242 0.97331 1.07972 1.20750 0.88472 0.92999 1.06533
1.17228 0.80873 0.87216 0.78266 1.90850 1.70813 1.27617 1.50074
1.48429 1.04359 1.09532 1.71092 1.22024 0.90059 0.86040 1.02035
1.22801 0.94957 0.97731 1.01796 1.23213 0.96358 0.93508 1.00866
0.90084 1.20655 0.93891 0.86282 0.95653 1.43881 1.62937 1.04453
1.21088 1.20838 0.93315 0.90201 0.94148 1.19106 1.34609 0.93374
0.91244 0.91602 1.25003 0.99923 0.97324 0.97403 1.70064 1.51965
1.02869 1.30230 0.86377 0.78175 0.77224 0.85010 1.21150 1.21723
1.21002 1.22362 0.88384 0.88391 1.00859 0.91567 0.92485 0.92511
0.90408 0.90366 0.91974 0.91998 0.83823 0.84112 0.81848 0.91430
0.91187 0.90990 0.90472 0.94390 0.92919 0.95168 0.94356 0.97982
0.93794 0.90164 0.91731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16
2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.24 16
3 C 0.05 0.45 4.76 37.16 0.18 0.63 16
4 O -0.27 -3.71 8.20 -40.60 -0.33 -4.04 16
5 C 0.14 1.79 6.71 -38.56 -0.26 1.54 16
6 C -0.18 -1.55 9.13 -39.15 -0.36 -1.91 16
7 C -0.11 -0.78 10.10 -39.36 -0.40 -1.18 16
8 C 0.05 0.45 11.17 -17.55 -0.20 0.25 16
9 N -0.41 -5.09 6.84 -9.71 -0.07 -5.16 16
10 C 0.05 0.76 6.73 -82.88 -0.56 0.20 16
11 C 0.58 10.50 7.83 -12.34 -0.10 10.40 16
12 O -0.52 -11.02 15.39 -16.63 -0.26 -11.28 16
13 N -0.60 -10.32 3.33 -171.65 -0.57 -10.89 16
14 C 0.12 1.68 5.40 -3.06 -0.02 1.67 16
15 C -0.13 -1.83 6.43 -24.83 -0.16 -1.98 16
16 C -0.12 -2.08 3.30 -88.42 -0.29 -2.37 16
17 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16
18 C 0.16 3.32 5.17 -4.04 -0.02 3.30 16
19 N -0.60 -15.32 2.84 -181.12 -0.51 -15.83 16
20 C 0.16 4.07 8.61 59.85 0.52 4.59 16
21 C -0.25 -7.08 9.64 -15.06 -0.15 -7.23 16
22 H 0.07 1.79 7.87 -52.48 -0.41 1.38 16
23 C 0.00 0.05 5.07 -17.43 -0.09 -0.04 16
24 N -0.91 -27.18 10.81 55.49 0.60 -26.58 16
25 Si 0.90 22.46 29.58 -169.99 -5.03 17.43 16
26 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16
27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
29 C 0.12 2.27 4.95 -2.54 -0.01 2.26 16
30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.06 0.45 7.70 -51.93 -0.40 0.05 16
36 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16
37 H 0.14 0.84 6.46 -52.49 -0.34 0.50 16
38 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16
39 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16
40 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16
41 H 0.07 0.95 7.40 -51.92 -0.38 0.56 16
42 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16
43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
44 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16
45 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16
46 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16
47 H 0.04 1.06 7.40 -51.93 -0.38 0.67 16
48 H 0.00 0.04 6.19 -51.93 -0.32 -0.28 16
49 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16
50 H 0.08 1.74 8.04 -51.93 -0.42 1.32 16
51 H 0.06 1.21 7.19 -51.93 -0.37 0.84 16
LS Contribution 405.88 15.07 6.12 6.12
Total: -1.00 -34.79 405.88 -10.16 -44.95
By element:
Atomic # 1 Polarization: 5.30 SS G_CDS: -8.40 Total: -3.09 kcal
Atomic # 6 Polarization: 10.08 SS G_CDS: -1.71 Total: 8.38 kcal
Atomic # 7 Polarization: -57.91 SS G_CDS: -0.55 Total: -58.46 kcal
Atomic # 8 Polarization: -14.73 SS G_CDS: -0.59 Total: -15.32 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -34.79 -10.16 -44.95 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691979373.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.258 kcal
(2) G-P(sol) polarization free energy of solvation -34.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.688 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds